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Legend_9813

Thiyya2 fail

Legend_9813
Apr 11th, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. details: YES
  10. allsnps: YES
  11. inbreed: NO
  12. ## qpAdm version: 1520
  13. seed: 16471598
  14. inbreed set NO
  15. inbreed set NO
  16. tmp: /tmp/fsx.502
  17.  
  18. left pops:
  19. Thiyya2
  20. IVC_AASI
  21. Central_Steppe_MLBA
  22.  
  23. right pops:
  24. Mbuti.DG
  25. EHG
  26. CHG
  27. WSHG
  28. Onge.SG
  29. Turkey_N
  30. Iraq_PPNA
  31. Levant_PPN
  32. CHN_Tarim_EMBA1
  33. Iran_GanjDareh_N
  34. Mongolia_North_N
  35. Serbia_IronGates_Mesolithic
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 1 dof: 10 chisq: 26.502 tail: 0.00312002626 dofdiff: 12 chisqdiff: -26.502 taildiff: 1
  40. B:
  41. scale 1.000
  42. EHG 1.484
  43. CHG 0.673
  44. WSHG 1.095
  45. Onge.SG -0.557
  46. Turkey_N 1.219
  47. Iraq_PPNA 0.739
  48. Levant_PPN 1.048
  49. CHN_Tarim_EMBA1 0.891
  50. Iran_GanjDareh_N 0.244
  51. Mongolia_North_N -0.190
  52. Serbia_IronGates_Mesolithic 1.678
  53. A:
  54. scale 61.619
  55. IVC_AASI 0.075
  56. Central_Steppe_MLBA 1.412
  57.  
  58.  
  59. full rank
  60. f4info:
  61. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 26.502 taildiff: 0.00312002626
  62. B:
  63. scale 271.033 41.876
  64. EHG 1.450 1.514
  65. CHG 0.867 0.712
  66. WSHG 1.723 1.178
  67. Onge.SG -0.544 -0.558
  68. Turkey_N 0.413 1.180
  69. Iraq_PPNA -0.376 0.645
  70. Levant_PPN -0.025 0.976
  71. CHN_Tarim_EMBA1 1.773 1.012
  72. Iran_GanjDareh_N 0.566 0.303
  73. Mongolia_North_N 0.933 -0.070
  74. Serbia_IronGates_Mesolithic 0.483 1.619
  75. A:
  76. scale 1.414 1.414
  77. IVC_AASI 1.414 0.000
  78. Central_Steppe_MLBA 0.000 1.414
  79.  
  80.  
  81. best coefficients: 1.056 -0.056
  82. totmean: 1.056 -0.056
  83. boot mean: 1.056 -0.056
  84. std. errors: 0.032 0.032
  85.  
  86. error covariance (* 1,000,000)
  87. 1017 -1017
  88. -1017 1017
  89.  
  90.  
  91. summ: Thiyya2 2 0.003120 1.056 -0.056 1017 -1017 1017
  92.  
  93. fixed pat wt dof chisq tail prob
  94. 00 0 10 26.502 0.00312003 1.056 -0.056 infeasible
  95. 01 1 11 29.449 0.00193298 1.000 0.000
  96. 10 1 11 1568.505 0 0.000 1.000
  97. best pat: 00 0.00312003 - -
  98. best pat: 01 0.00193298 chi(nested): 2.946 p-value for nested model: 0.0860857
  99.  
  100. coeffs: 1.056 -0.056
  101.  
  102. ## dscore:: f_4(Base, Fit, Rbase, right2)
  103. ## genstat:: f_4(Base, Fit, right1, right2)
  104.  
  105. details: IVC_AASI EHG 0.005352 2.940061
  106. details: Central_Steppe_MLBA EHG 0.036149 23.871296
  107. dscore: EHG f4: 0.003635 Z: 1.955492
  108.  
  109. details: IVC_AASI CHG 0.003200 1.516525
  110. details: Central_Steppe_MLBA CHG 0.017005 9.185580
  111. dscore: CHG f4: 0.002431 Z: 1.131420
  112.  
  113. details: IVC_AASI WSHG 0.006356 2.789194
  114. details: Central_Steppe_MLBA WSHG 0.028132 15.135392
  115. dscore: WSHG f4: 0.005142 Z: 2.210051
  116.  
  117. details: IVC_AASI Onge.SG -0.002008 -1.053864
  118. details: Central_Steppe_MLBA Onge.SG -0.013319 -7.985436
  119. dscore: Onge.SG f4: -0.001378 Z: -0.710077
  120.  
  121. details: IVC_AASI Turkey_N 0.001525 0.967659
  122. details: Central_Steppe_MLBA Turkey_N 0.028174 20.817982
  123. dscore: Turkey_N f4: 0.000040 Z: 0.024763
  124.  
  125. details: IVC_AASI Iraq_PPNA -0.001387 -0.533783
  126. details: Central_Steppe_MLBA Iraq_PPNA 0.015396 6.597417
  127. dscore: Iraq_PPNA f4: -0.002322 Z: -0.880110
  128.  
  129. details: IVC_AASI Levant_PPN -0.000092 -0.041607
  130. details: Central_Steppe_MLBA Levant_PPN 0.023308 12.293108
  131. dscore: Levant_PPN f4: -0.001396 Z: -0.621465
  132.  
  133. details: IVC_AASI CHN_Tarim_EMBA1 0.006542 3.108745
  134. details: Central_Steppe_MLBA CHN_Tarim_EMBA1 0.024174 13.739343
  135. dscore: CHN_Tarim_EMBA1 f4: 0.005559 Z: 2.587310
  136.  
  137. details: IVC_AASI Iran_GanjDareh_N 0.002089 1.113148
  138. details: Central_Steppe_MLBA Iran_GanjDareh_N 0.007244 4.584737
  139. dscore: Iran_GanjDareh_N f4: 0.001802 Z: 0.941994
  140.  
  141. details: IVC_AASI Mongolia_North_N 0.003441 1.849365
  142. details: Central_Steppe_MLBA Mongolia_North_N -0.001680 -0.997303
  143. dscore: Mongolia_North_N f4: 0.003726 Z: 1.970326
  144.  
  145. details: IVC_AASI Serbia_IronGates_Mesolithic 0.001783 0.999355
  146. details: Central_Steppe_MLBA Serbia_IronGates_Mesolithic 0.038657 25.724789
  147. dscore: Serbia_IronGates_Mesolithic f4: -0.000272 Z: -0.149370
  148.  
  149. gendstat: Mbuti.DG EHG 1.955
  150. gendstat: Mbuti.DG CHG 1.131
  151. gendstat: Mbuti.DG WSHG 2.210
  152. gendstat: Mbuti.DG Onge.SG -0.710
  153. gendstat: Mbuti.DG Turkey_N 0.025
  154. gendstat: Mbuti.DG Iraq_PPNA -0.880
  155. gendstat: Mbuti.DG Levant_PPN -0.621
  156. gendstat: Mbuti.DG CHN_Tarim_EMBA1 2.587
  157. gendstat: Mbuti.DG Iran_GanjDareh_N 0.942
  158. gendstat: Mbuti.DG Mongolia_North_N 1.970
  159. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.149
  160. gendstat: EHG CHG -0.604
  161. gendstat: EHG WSHG 0.848
  162. gendstat: EHG Onge.SG -2.450
  163. gendstat: EHG Turkey_N -2.544
  164. gendstat: EHG Iraq_PPNA -2.349
  165. gendstat: EHG Levant_PPN -2.365
  166. gendstat: EHG CHN_Tarim_EMBA1 1.270
  167. gendstat: EHG Iran_GanjDareh_N -1.026
  168. gendstat: EHG Mongolia_North_N 0.049
  169. gendstat: EHG Serbia_IronGates_Mesolithic -3.060
  170. gendstat: CHG WSHG 1.129
  171. gendstat: CHG Onge.SG -1.566
  172. gendstat: CHG Turkey_N -1.292
  173. gendstat: CHG Iraq_PPNA -1.679
  174. gendstat: CHG Levant_PPN -1.560
  175. gendstat: CHG CHN_Tarim_EMBA1 1.397
  176. gendstat: CHG Iran_GanjDareh_N -0.313
  177. gendstat: CHG Mongolia_North_N 0.568
  178. gendstat: CHG Serbia_IronGates_Mesolithic -1.321
  179. gendstat: WSHG Onge.SG -2.621
  180. gendstat: WSHG Turkey_N -2.499
  181. gendstat: WSHG Iraq_PPNA -2.621
  182. gendstat: WSHG Levant_PPN -2.469
  183. gendstat: WSHG CHN_Tarim_EMBA1 0.210
  184. gendstat: WSHG Iran_GanjDareh_N -1.442
  185. gendstat: WSHG Mongolia_North_N -0.631
  186. gendstat: WSHG Serbia_IronGates_Mesolithic -2.690
  187. gendstat: Onge.SG Turkey_N 0.709
  188. gendstat: Onge.SG Iraq_PPNA -0.326
  189. gendstat: Onge.SG Levant_PPN -0.007
  190. gendstat: Onge.SG CHN_Tarim_EMBA1 3.168
  191. gendstat: Onge.SG Iran_GanjDareh_N 1.400
  192. gendstat: Onge.SG Mongolia_North_N 2.811
  193. gendstat: Onge.SG Serbia_IronGates_Mesolithic 0.539
  194. gendstat: Turkey_N Iraq_PPNA -0.985
  195. gendstat: Turkey_N Levant_PPN -0.815
  196. gendstat: Turkey_N CHN_Tarim_EMBA1 3.043
  197. gendstat: Turkey_N Iran_GanjDareh_N 1.151
  198. gendstat: Turkey_N Mongolia_North_N 2.055
  199. gendstat: Turkey_N Serbia_IronGates_Mesolithic -0.255
  200. gendstat: Iraq_PPNA Levant_PPN 0.313
  201. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 2.758
  202. gendstat: Iraq_PPNA Iran_GanjDareh_N 1.567
  203. gendstat: Iraq_PPNA Mongolia_North_N 2.230
  204. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic 0.825
  205. gendstat: Levant_PPN CHN_Tarim_EMBA1 2.901
  206. gendstat: Levant_PPN Iran_GanjDareh_N 1.428
  207. gendstat: Levant_PPN Mongolia_North_N 2.091
  208. gendstat: Levant_PPN Serbia_IronGates_Mesolithic 0.546
  209. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N -1.811
  210. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N -0.936
  211. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic -3.196
  212. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.911
  213. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -1.148
  214. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -2.161
  215.  
  216. removing /tmp/fsx.502
  217. ##end of qpAdm: 1.268 seconds cpu 0.700 Mbytes in use
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