qiime_configurations

System information
==================
         Platform:      linux2
   Python version:      2.7.12 (default, Dec  4 2017, 14:50:18)  [GCC 5.4.0 20160609]
Python executable:      /usr/bin/python

QIIME default reference information
===================================
For details on what files are used as QIIME's default references, see here:
 https://github.com/biocore/qiime-default-reference/releases/tag/0.1.3

Dependency versions
===================
          QIIME library version:        1.9.1
           QIIME script version:        1.9.1
qiime-default-reference version:        0.1.3
                  NumPy version:        1.9.2
                  SciPy version:        1.1.0
                 pandas version:        0.22.0
             matplotlib version:        1.5.3
            biom-format version:        2.1.6
                   h5py version:        2.7.1 (HDF5 version: 1.8.18)
                   qcli version:        0.1.1
                   pyqi version:        0.3.2
             scikit-bio version:        0.2.3
                 PyNAST version:        1.2.2
                Emperor version:        0.9.60
                burrito version:        0.9.1
       burrito-fillings version:        0.1.1
              sortmerna version:        SortMeRNA version 2.0, 29/11/2014
              sumaclust version:        SUMACLUST Version 1.0.00
                  swarm version:        Swarm 1.2.19 [Jul  9 2018 14:47:14]
                          gdata:        Installed.

QIIME config values
===================
For definitions of these settings and to learn how to configure QIIME, see here:
 http://qiime.org/install/qiime_config.html
 http://qiime.org/tutorials/parallel_qiime.html

                     blastmat_dir:      None
      pick_otus_reference_seqs_fp:      /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
                         sc_queue:      all.q
      topiaryexplorer_project_dir:      None
     pynast_template_alignment_fp:      /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta
                  cluster_jobs_fp:      start_parallel_jobs.py
pynast_template_alignment_blastdb:      None
assign_taxonomy_reference_seqs_fp:      /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
                     torque_queue:      friendlyq
                    jobs_to_start:      1
                       slurm_time:      None
            denoiser_min_per_core:      50
assign_taxonomy_id_to_taxonomy_fp:      /usr/local/lib/python2.7/dist-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
                         temp_dir:      /tmp/
                     slurm_memory:      None
                      slurm_queue:      None
                      blastall_fp:      blastall
                 seconds_to_sleep:      1