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misnomer001

dinkhaA TKM_IA + isr_c + SehGabiC fail

misnomer001
Aug 27th, 2022
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  1. qpAdm: parameter file: parqpa2
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: southmerged1
  5. S1X: southmerged1
  6. indivname: southmerged1.ind
  7. snpname: southmerged1.snp
  8. genotypename: southmerged1.geno
  9. popleft: left
  10. popright: right
  11. details: YES
  12. allsnps: YES
  13. inbreed: NO
  14. oldallsnps: NO
  15. ## qpAdm version: 1520
  16. seed: 1169045513
  17. inbreed set NO
  18. inbreed set NO
  19. tmp: /tmp/fsx.17152
  20.  
  21. left pops:
  22. IRN_DinkhaTepe_BIA_A
  23. Turkmenistan_IA.SG
  24. Israel_C
  25. Iran_C_SehGabi
  26.  
  27. right pops:
  28. Mbuti.DG
  29. Turkey_N
  30. ONG.SG
  31. Tarim_EMBA1
  32. PPN
  33. CHG
  34. EHG
  35. Iran_HajjiFiruz_N
  36. Serbia_IronGates_Mesolithic
  37. Iran_GanjDareh_N
  38. Azerbaijan_Caucasus_lowlands_LN
  39. IVCp
  40.  
  41. codimension 1
  42. f4info:
  43. f4rank: 2 dof: 9 chisq: 29.858 tail: 0.000463762948 dofdiff: 11 chisqdiff: -29.858 taildiff: 1
  44. B:
  45. scale 1.000 1.000
  46. Turkey_N -1.135 0.694
  47. ONG.SG 0.545 0.074
  48. Tarim_EMBA1 1.702 1.021
  49. PPN -1.866 0.888
  50. CHG 0.748 -1.060
  51. EHG 1.062 1.078
  52. Iran_HajjiFiruz_N -0.424 -0.488
  53. Serbia_IronGates_Mesolithic 0.302 1.424
  54. Iran_GanjDareh_N 0.651 -1.854
  55. Azerbaijan_Caucasus_lowlands_LN -0.629 -0.359
  56. IVCp 0.508 -0.750
  57. A:
  58. scale 163.959 360.899
  59. Turkmenistan_IA.SG 1.474 0.924
  60. Israel_C -0.838 0.792
  61. Iran_C_SehGabi 0.353 -1.232
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 29.858 taildiff: 0.000463762948
  67. B:
  68. scale 106.768 172.193 237.395
  69. Turkey_N -0.943 1.272 -1.157
  70. ONG.SG 0.627 -0.331 0.412
  71. Tarim_EMBA1 2.041 -0.933 0.345
  72. PPN -1.363 2.232 -1.267
  73. CHG 0.357 -1.088 1.131
  74. EHG 1.471 -0.281 0.020
  75. Iran_HajjiFiruz_N -0.574 0.228 0.195
  76. Serbia_IronGates_Mesolithic 0.703 0.333 -0.910
  77. Iran_GanjDareh_N 0.172 -1.171 2.055
  78. Azerbaijan_Caucasus_lowlands_LN -0.640 0.561 0.146
  79. IVCp 0.375 -0.555 1.174
  80. A:
  81. scale 1.732 1.732 1.732
  82. Turkmenistan_IA.SG 1.732 0.000 0.000
  83. Israel_C 0.000 1.732 0.000
  84. Iran_C_SehGabi 0.000 0.000 1.732
  85.  
  86.  
  87. best coefficients: 0.156 0.443 0.402
  88. totmean: 0.156 0.443 0.402
  89. boot mean: 0.156 0.443 0.402
  90. std. errors: 0.020 0.017 0.027
  91.  
  92. error covariance (* 1,000,000)
  93. 406 35 -441
  94. 35 274 -309
  95. -441 -309 750
  96.  
  97.  
  98. summ: IRN_DinkhaTepe_BIA_A 3 0.000464 0.156 0.443 0.402 406 35 -441 274 -309 ...
  99. 750
  100.  
  101. fixed pat wt dof chisq tail prob
  102. 000 0 9 29.858 0.000463763 0.156 0.443 0.402
  103. 001 1 10 170.900 0 0.440 0.560 0.000
  104. 010 1 10 451.778 0 -0.077 0.000 1.077 infeasible
  105. 100 1 10 97.009 2.15875e-16 0.000 0.426 0.574
  106. 011 2 11 592.163 0 1.000 0.000 0.000
  107. 101 2 11 1024.431 0 0.000 1.000 0.000
  108. 110 2 11 456.343 0 0.000 0.000 1.000
  109. best pat: 000 0.000463763 - -
  110. best pat: 100 2.15875e-16 chi(nested): 67.151 p-value for nested model: 2.51505e-16
  111. best pat: 110 6.4308e-91 chi(nested): 359.334 p-value for nested model: 3.93171e-80
  112.  
  113. coeffs: 0.156 0.443 0.402
  114.  
  115. ## dscore:: f_4(Base, Fit, Rbase, right2)
  116. ## genstat:: f_4(Base, Fit, right1, right2)
  117.  
  118. details: Turkmenistan_IA.SG Turkey_N -0.008833 -7.870169
  119. details: Israel_C Turkey_N 0.007385 12.548834
  120. details: Iran_C_SehGabi Turkey_N -0.004873 -6.848453
  121. dscore: Turkey_N f4: -0.000062 Z: -0.117650
  122.  
  123. details: Turkmenistan_IA.SG ONG.SG 0.005868 4.702026
  124. details: Israel_C ONG.SG -0.001924 -2.827670
  125. details: Iran_C_SehGabi ONG.SG 0.001736 2.290825
  126. dscore: ONG.SG f4: 0.000759 Z: 1.281569
  127.  
  128. details: Turkmenistan_IA.SG Tarim_EMBA1 0.019115 12.468922
  129. details: Israel_C Tarim_EMBA1 -0.005420 -7.299547
  130. details: Iran_C_SehGabi Tarim_EMBA1 0.001455 1.653448
  131. dscore: Tarim_EMBA1 f4: 0.001160 Z: 1.741959
  132.  
  133. details: Turkmenistan_IA.SG PPN -0.012769 -10.128064
  134. details: Israel_C PPN 0.012964 18.972950
  135. details: Iran_C_SehGabi PPN -0.005337 -6.531643
  136. dscore: PPN f4: 0.001609 Z: 2.632794
  137.  
  138. details: Turkmenistan_IA.SG CHG 0.003344 2.331304
  139. details: Israel_C CHG -0.006316 -8.606691
  140. details: Iran_C_SehGabi CHG 0.004762 5.330995
  141. dscore: CHG f4: -0.000363 Z: -0.544796
  142.  
  143. details: Turkmenistan_IA.SG EHG 0.013777 9.424865
  144. details: Israel_C EHG -0.001631 -2.176060
  145. details: Iran_C_SehGabi EHG 0.000085 0.097488
  146. dscore: EHG f4: 0.001456 Z: 2.187568
  147.  
  148. details: Turkmenistan_IA.SG Iran_HajjiFiruz_N -0.005375 -3.899700
  149. details: Israel_C Iran_HajjiFiruz_N 0.001324 1.887000
  150. details: Iran_C_SehGabi Iran_HajjiFiruz_N 0.000820 0.973782
  151. dscore: Iran_HajjiFiruz_N f4: 0.000079 Z: 0.125500
  152.  
  153. details: Turkmenistan_IA.SG Serbia_IronGates_Mesolithic 0.006582 5.217067
  154. details: Israel_C Serbia_IronGates_Mesolithic 0.001933 3.008861
  155. details: Iran_C_SehGabi Serbia_IronGates_Mesolithic -0.003832 -5.201211
  156. dscore: Serbia_IronGates_Mesolithic f4: 0.000341 Z: 0.602642
  157.  
  158. details: Turkmenistan_IA.SG Iran_GanjDareh_N 0.001607 1.333299
  159. details: Israel_C Iran_GanjDareh_N -0.006800 -11.024554
  160. details: Iran_C_SehGabi Iran_GanjDareh_N 0.008657 11.328623
  161. dscore: Iran_GanjDareh_N f4: 0.000717 Z: 1.273608
  162.  
  163. details: Turkmenistan_IA.SG Azerbaijan_Caucasus_lowlands_LN -0.005996 -4.219366
  164. details: Israel_C Azerbaijan_Caucasus_lowlands_LN 0.003261 4.447474
  165. details: Iran_C_SehGabi Azerbaijan_Caucasus_lowlands_LN 0.000615 0.709203
  166. dscore: Azerbaijan_Caucasus_lowlands_LN f4: 0.000757 Z: 1.141646
  167.  
  168. details: Turkmenistan_IA.SG IVCp 0.003515 2.879898
  169. details: Israel_C IVCp -0.003222 -5.182988
  170. details: Iran_C_SehGabi IVCp 0.004946 6.503508
  171. dscore: IVCp f4: 0.001107 Z: 1.924352
  172.  
  173. gendstat: Mbuti.DG Turkey_N -0.118
  174. gendstat: Mbuti.DG ONG.SG 1.282
  175. gendstat: Mbuti.DG Tarim_EMBA1 1.742
  176. gendstat: Mbuti.DG PPN 2.633
  177. gendstat: Mbuti.DG CHG -0.545
  178. gendstat: Mbuti.DG EHG 2.188
  179. gendstat: Mbuti.DG Iran_HajjiFiruz_N 0.125
  180. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.603
  181. gendstat: Mbuti.DG Iran_GanjDareh_N 1.274
  182. gendstat: Mbuti.DG Azerbaijan_Caucasus_lowlands_LN 1.142
  183. gendstat: Mbuti.DG IVCp 1.924
  184. gendstat: Turkey_N ONG.SG 1.471
  185. gendstat: Turkey_N Tarim_EMBA1 2.002
  186. gendstat: Turkey_N PPN 3.853
  187. gendstat: Turkey_N CHG -0.503
  188. gendstat: Turkey_N EHG 2.708
  189. gendstat: Turkey_N Iran_HajjiFiruz_N 0.295
  190. gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.983
  191. gendstat: Turkey_N Iran_GanjDareh_N 1.477
  192. gendstat: Turkey_N Azerbaijan_Caucasus_lowlands_LN 1.576
  193. gendstat: Turkey_N IVCp 2.229
  194. gendstat: ONG.SG Tarim_EMBA1 0.617
  195. gendstat: ONG.SG PPN 1.301
  196. gendstat: ONG.SG CHG -1.593
  197. gendstat: ONG.SG EHG 1.041
  198. gendstat: ONG.SG Iran_HajjiFiruz_N -1.024
  199. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.716
  200. gendstat: ONG.SG Iran_GanjDareh_N -0.067
  201. gendstat: ONG.SG Azerbaijan_Caucasus_lowlands_LN -0.002
  202. gendstat: ONG.SG IVCp 0.616
  203. gendstat: Tarim_EMBA1 PPN 0.644
  204. gendstat: Tarim_EMBA1 CHG -2.076
  205. gendstat: Tarim_EMBA1 EHG 0.541
  206. gendstat: Tarim_EMBA1 Iran_HajjiFiruz_N -1.593
  207. gendstat: Tarim_EMBA1 Serbia_IronGates_Mesolithic -1.448
  208. gendstat: Tarim_EMBA1 Iran_GanjDareh_N -0.687
  209. gendstat: Tarim_EMBA1 Azerbaijan_Caucasus_lowlands_LN -0.568
  210. gendstat: Tarim_EMBA1 IVCp -0.088
  211. gendstat: PPN CHG -2.836
  212. gendstat: PPN EHG -0.226
  213. gendstat: PPN Iran_HajjiFiruz_N -2.594
  214. gendstat: PPN Serbia_IronGates_Mesolithic -2.339
  215. gendstat: PPN Iran_GanjDareh_N -1.408
  216. gendstat: PPN Azerbaijan_Caucasus_lowlands_LN -1.353
  217. gendstat: PPN IVCp -0.793
  218. gendstat: CHG EHG 2.496
  219. gendstat: CHG Iran_HajjiFiruz_N 0.655
  220. gendstat: CHG Serbia_IronGates_Mesolithic 1.102
  221. gendstat: CHG Iran_GanjDareh_N 1.752
  222. gendstat: CHG Azerbaijan_Caucasus_lowlands_LN 1.612
  223. gendstat: CHG IVCp 2.415
  224. gendstat: EHG Iran_HajjiFiruz_N -2.142
  225. gendstat: EHG Serbia_IronGates_Mesolithic -2.267
  226. gendstat: EHG Iran_GanjDareh_N -1.167
  227. gendstat: EHG Azerbaijan_Caucasus_lowlands_LN -1.000
  228. gendstat: EHG IVCp -0.586
  229. gendstat: Iran_HajjiFiruz_N Serbia_IronGates_Mesolithic 0.474
  230. gendstat: Iran_HajjiFiruz_N Iran_GanjDareh_N 1.110
  231. gendstat: Iran_HajjiFiruz_N Azerbaijan_Caucasus_lowlands_LN 1.094
  232. gendstat: Iran_HajjiFiruz_N IVCp 1.685
  233. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N 0.675
  234. gendstat: Serbia_IronGates_Mesolithic Azerbaijan_Caucasus_lowlands_LN 0.705
  235. gendstat: Serbia_IronGates_Mesolithic IVCp 1.427
  236. gendstat: Iran_GanjDareh_N Azerbaijan_Caucasus_lowlands_LN 0.065
  237. gendstat: Iran_GanjDareh_N IVCp 0.744
  238. gendstat: Azerbaijan_Caucasus_lowlands_LN IVCp 0.557
  239.  
  240. removing /tmp/fsx.17152
  241. ##end of qpAdm: 8.809 seconds cpu 1.020 Mbytes in use
  242.  
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