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- ##fsdfsd
- ##sdd-ver gen 5.5.7
- Xm Gen CDS 1 148 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 149 193 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 194 279 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 280 412 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 413 499 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 500 702 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen extracted region 1 148 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="437225 <- 437372";ID=Bm
- Xm Gen extracted region 149 193 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="436969 <- 437013";ID=Bm
- Xm Gen extracted region 194 279 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="435418 <- 435503";ID=Bm
- Xm Gen extracted region 280 412 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="435209 <- 435341";ID=Bm
- Xm Gen extracted region 413 499 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="434376 <- 434462";ID=Bm
- Xm Gen extracted region 500 702 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="434084 <- 434286";ID=Bm
- ##gff-version 2
- ##source-version geneious 5.5.7
- Xm Gen CDS 437225 437372 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 436969 437013 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 435418 435503 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 435209 435341 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 434376 434462 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen CDS 434084 434286 . + . Name=;created by=User;modified by=User;ID=Bm
- Xm Gen extracted region 1 148 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="437225 <- 437372";ID=Bm
- Xm Gen extracted region 149 193 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="436969 <- 437013";ID=Bm
- Xm Gen extracted region 194 279 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="435418 <- 435503";ID=Bm
- Xm Gen extracted region 280 412 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="435209 <- 435341";ID=Bm
- Xm Gen extracted region 413 499 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="434376 <- 434462";ID=Bm
- Xm Gen extracted region 500 702 . + . Name=Extracted region from gi|371442828|gb|JH557032.1|;Extracted interval="434084 <- 434286";ID=Bm
- head -2 file
- join <(grep "Xm Gen CDS" file | cat -n)
- <(grep "Xm Gen extracted region" file | cat -n) |
- sed 's/^[0-9]* //;s/CDS [0-9]*s[0-9]*(s.*interval="([0-9]*)s<-s([0-9]*))/CDSt2t3t1/;s/ Xm Gen extracted.*//'
- grep "Xm Gen extracted region" file
- #!/bin/bash
- FILE="$1"
- head -2 "$FILE"
- join <(grep "Xm Gen CDS" "$FILE" | cat -n)
- <(grep "Xm Gen extracted region" "$FILE" | cat -n) |
- sed 's/^[0-9]* //;s/CDS [0-9]*s[0-9]*(s.*interval="([0-9]*)s<-s([0-9]*))/CDSt2t3t1/;s/ Xm Gen extracted.*//'
- grep "Xm Gen extracted region" "$FILE"
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