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onyx_IA_2

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Jun 16th, 2022
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  1. qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: /home/onyx/host/onyx1240K/fstatsa.txt
  5. popleft: /home/onyx/host/onyx1240K/left.txt
  6. popright: /home/onyx/host/onyx1240K/right.txt
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: 1972373849
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. onyx
  15. Kyrgyzstan_Saka_IA_o
  16. Iberia_Emporion_colony
  17. Hungary_Avar_5_AV2
  18. Iran_Hasanlu_IA.SG
  19.  
  20. right pops:
  21. Mbuti.DG
  22. Tarim_EMBA1
  23. CHG
  24. Balkan_HG
  25. Iran_N
  26. EHG
  27. Turkey_N.SG
  28. Russia_MLBA_Sintashta
  29. Switzerland_Bichon.SG
  30. Natufian
  31. Russia_DevilsCave_N.SG
  32. Greece_Minoan_Lassithi
  33. Mongolia_North_N
  34. Greece_Peloponnese_N
  35. ONG.SG
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 3 dof: 11 chisq: 17.562 tail: 0.0923155243 dofdiff: 13 chisqdiff: -17.562 taildiff: 1
  40. B:
  41. scale 1.000 1.000 1.000
  42. Tarim_EMBA1 -0.556 1.192 -0.837
  43. CHG 0.622 -0.169 -0.758
  44. Balkan_HG 0.705 1.883 -0.628
  45. Iran_N 0.395 -0.215 -0.794
  46. EHG 0.151 1.704 -0.661
  47. Turkey_N.SG 1.479 -0.064 1.183
  48. Russia_MLBA_Sintashta 0.706 0.934 -0.309
  49. Switzerland_Bichon.SG 0.605 1.891 -0.972
  50. Natufian 1.007 -0.272 0.949
  51. Russia_DevilsCave_N.SG -1.383 0.728 1.381
  52. Greece_Minoan_Lassithi 1.378 -0.055 1.548
  53. Mongolia_North_N -1.520 0.938 1.485
  54. Greece_Peloponnese_N 1.418 0.002 1.153
  55. ONG.SG -0.653 0.341 0.288
  56. A:
  57. scale 339.869 650.721 1523.737
  58. Kyrgyzstan_Saka_IA_o -1.957 0.106 0.497
  59. Iberia_Emporion_colony 0.215 0.153 0.980
  60. Hungary_Avar_5_AV2 0.051 1.780 -0.714
  61. Iran_Hasanlu_IA.SG -0.349 -0.893 -1.511
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 17.562 taildiff: 0.0923155243
  67. B:
  68. scale 174.479 692.583 308.790 619.608
  69. Tarim_EMBA1 0.677 0.278 1.415 0.331
  70. CHG -0.642 0.066 0.087 0.212
  71. Balkan_HG -0.620 0.796 1.902 -1.422
  72. Iran_N -0.313 0.564 0.231 0.906
  73. EHG -0.107 0.325 1.688 -1.015
  74. Turkey_N.SG -1.343 1.614 0.019 -1.378
  75. Russia_MLBA_Sintashta -0.612 0.846 1.051 -0.775
  76. Switzerland_Bichon.SG -0.638 0.072 1.812 -1.560
  77. Natufian -0.881 1.458 -0.124 -0.851
  78. Russia_DevilsCave_N.SG 1.638 0.927 0.659 -0.111
  79. Greece_Minoan_Lassithi -1.206 1.809 -0.019 -1.477
  80. Mongolia_North_N 1.711 0.591 0.675 -0.540
  81. Greece_Peloponnese_N -1.270 1.662 0.091 -1.336
  82. ONG.SG 0.771 0.405 0.410 0.209
  83. A:
  84. scale 2.000 2.000 2.000 2.000
  85. Kyrgyzstan_Saka_IA_o 2.000 0.000 0.000 0.000
  86. Iberia_Emporion_colony 0.000 2.000 0.000 0.000
  87. Hungary_Avar_5_AV2 0.000 0.000 2.000 0.000
  88. Iran_Hasanlu_IA.SG 0.000 0.000 0.000 2.000
  89.  
  90.  
  91. best coefficients: 0.008 0.564 0.110 0.317
  92. totmean: 0.008 0.564 0.110 0.317
  93. boot mean: 0.009 0.565 0.110 0.317
  94. std. errors: 0.024 0.065 0.046 0.064
  95.  
  96. error covariance (* 1,000,000)
  97. 574 519 -276 -816
  98. 519 4170 -1609 -3080
  99. -276 -1609 2106 -222
  100. -816 -3080 -222 4118
  101.  
  102.  
  103. summ: onyx 4 0.092316 0.009 0.565 0.110 0.317 574 519 -276 -816 4170 ...
  104. -1609 -3080 2106 -222 4118
  105.  
  106. fixed pat wt dof chisq tail prob
  107. 0000 0 11 17.562 0.0923155 0.008 0.564 0.110 0.317
  108. 0001 1 12 46.442 5.81997e-06 0.076 0.804 0.120 0.000
  109. 0010 1 12 25.690 0.0118706 0.023 0.651 0.000 0.326
  110. 0100 1 12 85.783 3.21693e-13 -0.085 0.000 0.220 0.864 infeasible
  111. 1000 1 12 23.816 0.0215453 0.000 0.569 0.106 0.325
  112. 0011 2 13 52.808 9.75825e-07 0.091 0.909 0.000 0.000
  113. 0101 2 13 286.417 0 0.070 0.000 0.930 0.000
  114. 0110 2 13 107.546 5.64246e-17 -0.087 0.000 0.000 1.087 infeasible
  115. 1001 2 13 59.080 7.6684e-08 0.000 0.843 0.157 0.000
  116. 1010 2 13 27.532 0.0105105 0.000 0.642 0.000 0.358
  117. 1100 2 13 95.938 1.01154e-14 0.000 0.000 0.208 0.792
  118. 0111 3 14 923.412 0 1.000 0.000 0.000 0.000
  119. 1011 3 14 67.728 4.96353e-09 0.000 1.000 0.000 0.000
  120. 1101 3 14 293.611 0 0.000 0.000 1.000 0.000
  121. 1110 3 14 113.508 1.16476e-17 0.000 0.000 0.000 1.000
  122. best pat: 0000 0.0923155 - -
  123. best pat: 1000 0.0215453 chi(nested): 6.254 p-value for nested model: 0.0123916
  124. best pat: 1010 0.0105105 chi(nested): 3.716 p-value for nested model: 0.0538884
  125. best pat: 1011 4.96353e-09 chi(nested): 40.196 p-value for nested model: 2.29756e-10
  126.  
  127. coeffs: 0.008 0.564 0.110 0.317
  128.  
  129. ## dscore:: f_4(Base, Fit, Rbase, right2)
  130. ## genstat:: f_4(Base, Fit, right1, right2)
  131.  
  132. details: Kyrgyzstan_Saka_IA_o Tarim_EMBA1 0.003877 6.360120
  133. details: Iberia_Emporion_colony Tarim_EMBA1 0.000402 0.792204
  134. details: Hungary_Avar_5_AV2 Tarim_EMBA1 0.004583 7.879643
  135. details: Iran_Hasanlu_IA.SG Tarim_EMBA1 0.000534 0.928941
  136. dscore: Tarim_EMBA1 f4: 0.000933 Z: 2.035637
  137.  
  138. details: Kyrgyzstan_Saka_IA_o CHG -0.003679 -5.839459
  139. details: Iberia_Emporion_colony CHG 0.000095 0.191701
  140. details: Hungary_Avar_5_AV2 CHG 0.000281 0.481180
  141. details: Iran_Hasanlu_IA.SG CHG 0.000342 0.609609
  142. dscore: CHG f4: 0.000162 Z: 0.363568
  143.  
  144. details: Kyrgyzstan_Saka_IA_o Balkan_HG -0.003552 -6.569880
  145. details: Iberia_Emporion_colony Balkan_HG 0.001149 2.692941
  146. details: Hungary_Avar_5_AV2 Balkan_HG 0.006159 12.206133
  147. details: Iran_Hasanlu_IA.SG Balkan_HG -0.002294 -4.669178
  148. dscore: Balkan_HG f4: 0.000569 Z: 1.479300
  149.  
  150. details: Kyrgyzstan_Saka_IA_o Iran_N -0.001795 -3.394571
  151. details: Iberia_Emporion_colony Iran_N 0.000814 1.961560
  152. details: Hungary_Avar_5_AV2 Iran_N 0.000748 1.583541
  153. details: Iran_Hasanlu_IA.SG Iran_N 0.001462 3.050968
  154. dscore: Iran_N f4: 0.000990 Z: 2.642151
  155.  
  156. details: Kyrgyzstan_Saka_IA_o EHG -0.000614 -0.997750
  157. details: Iberia_Emporion_colony EHG 0.000470 0.914406
  158. details: Hungary_Avar_5_AV2 EHG 0.005466 9.143335
  159. details: Iran_Hasanlu_IA.SG EHG -0.001639 -2.728708
  160. dscore: EHG f4: 0.000341 Z: 0.738092
  161.  
  162. details: Kyrgyzstan_Saka_IA_o Turkey_N.SG -0.007698 -13.498326
  163. details: Iberia_Emporion_colony Turkey_N.SG 0.002330 5.015249
  164. details: Hungary_Avar_5_AV2 Turkey_N.SG 0.000061 0.120628
  165. details: Iran_Hasanlu_IA.SG Turkey_N.SG -0.002223 -4.269109
  166. dscore: Turkey_N.SG f4: 0.000552 Z: 1.320816
  167.  
  168. details: Kyrgyzstan_Saka_IA_o Russia_MLBA_Sintashta -0.003508 -7.444376
  169. details: Iberia_Emporion_colony Russia_MLBA_Sintashta 0.001221 3.285275
  170. details: Hungary_Avar_5_AV2 Russia_MLBA_Sintashta 0.003402 8.203233
  171. details: Iran_Hasanlu_IA.SG Russia_MLBA_Sintashta -0.001251 -2.992399
  172. dscore: Russia_MLBA_Sintashta f4: 0.000637 Z: 1.928011
  173.  
  174. details: Kyrgyzstan_Saka_IA_o Switzerland_Bichon.SG -0.003656 -4.852641
  175. details: Iberia_Emporion_colony Switzerland_Bichon.SG 0.000103 0.175044
  176. details: Hungary_Avar_5_AV2 Switzerland_Bichon.SG 0.005869 8.362669
  177. details: Iran_Hasanlu_IA.SG Switzerland_Bichon.SG -0.002518 -3.548540
  178. dscore: Switzerland_Bichon.SG f4: -0.000126 Z: -0.230773
  179.  
  180. details: Kyrgyzstan_Saka_IA_o Natufian -0.005047 -6.443586
  181. details: Iberia_Emporion_colony Natufian 0.002106 3.050191
  182. details: Hungary_Avar_5_AV2 Natufian -0.000403 -0.526335
  183. details: Iran_Hasanlu_IA.SG Natufian -0.001374 -1.786378
  184. dscore: Natufian f4: 0.000666 Z: 1.122711
  185.  
  186. details: Kyrgyzstan_Saka_IA_o Russia_DevilsCave_N.SG 0.009389 14.704452
  187. details: Iberia_Emporion_colony Russia_DevilsCave_N.SG 0.001338 2.745801
  188. details: Hungary_Avar_5_AV2 Russia_DevilsCave_N.SG 0.002134 3.744464
  189. details: Iran_Hasanlu_IA.SG Russia_DevilsCave_N.SG -0.000179 -0.333030
  190. dscore: Russia_DevilsCave_N.SG f4: 0.001013 Z: 2.340303
  191.  
  192. details: Kyrgyzstan_Saka_IA_o Greece_Minoan_Lassithi -0.006914 -12.292305
  193. details: Iberia_Emporion_colony Greece_Minoan_Lassithi 0.002612 5.858467
  194. details: Hungary_Avar_5_AV2 Greece_Minoan_Lassithi -0.000063 -0.117802
  195. details: Iran_Hasanlu_IA.SG Greece_Minoan_Lassithi -0.002385 -4.687933
  196. dscore: Greece_Minoan_Lassithi f4: 0.000653 Z: 1.618658
  197.  
  198. details: Kyrgyzstan_Saka_IA_o Mongolia_North_N 0.009808 16.296196
  199. details: Iberia_Emporion_colony Mongolia_North_N 0.000854 1.881538
  200. details: Hungary_Avar_5_AV2 Mongolia_North_N 0.002187 4.223621
  201. details: Iran_Hasanlu_IA.SG Mongolia_North_N -0.000871 -1.675347
  202. dscore: Mongolia_North_N f4: 0.000529 Z: 1.292440
  203.  
  204. details: Kyrgyzstan_Saka_IA_o Greece_Peloponnese_N -0.007279 -13.906319
  205. details: Iberia_Emporion_colony Greece_Peloponnese_N 0.002400 5.554328
  206. details: Hungary_Avar_5_AV2 Greece_Peloponnese_N 0.000296 0.616846
  207. details: Iran_Hasanlu_IA.SG Greece_Peloponnese_N -0.002156 -4.622696
  208. dscore: Greece_Peloponnese_N f4: 0.000642 Z: 1.707283
  209.  
  210. details: Kyrgyzstan_Saka_IA_o ONG.SG 0.004421 7.804372
  211. details: Iberia_Emporion_colony ONG.SG 0.000585 1.298235
  212. details: Hungary_Avar_5_AV2 ONG.SG 0.001327 2.610216
  213. details: Iran_Hasanlu_IA.SG ONG.SG 0.000337 0.640451
  214. dscore: ONG.SG f4: 0.000620 Z: 1.512980
  215.  
  216. gendstat: Mbuti.DG Tarim_EMBA1 2.036
  217. gendstat: Mbuti.DG CHG 0.364
  218. gendstat: Mbuti.DG Balkan_HG 1.479
  219. gendstat: Mbuti.DG Iran_N 2.642
  220. gendstat: Mbuti.DG EHG 0.738
  221. gendstat: Mbuti.DG Turkey_N.SG 1.321
  222. gendstat: Mbuti.DG Russia_MLBA_Sintashta 1.928
  223. gendstat: Mbuti.DG Switzerland_Bichon.SG -0.231
  224. gendstat: Mbuti.DG Natufian 1.123
  225. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 2.340
  226. gendstat: Mbuti.DG Greece_Minoan_Lassithi 1.619
  227. gendstat: Mbuti.DG Mongolia_North_N 1.292
  228. gendstat: Mbuti.DG Greece_Peloponnese_N 1.707
  229. gendstat: Mbuti.DG ONG.SG 1.513
  230. gendstat: Tarim_EMBA1 CHG -1.542
  231. gendstat: Tarim_EMBA1 Balkan_HG -0.929
  232. gendstat: Tarim_EMBA1 Iran_N 0.127
  233. gendstat: Tarim_EMBA1 EHG -1.418
  234. gendstat: Tarim_EMBA1 Turkey_N.SG -0.803
  235. gendstat: Tarim_EMBA1 Russia_MLBA_Sintashta -0.878
  236. gendstat: Tarim_EMBA1 Switzerland_Bichon.SG -1.909
  237. gendstat: Tarim_EMBA1 Natufian -0.408
  238. gendstat: Tarim_EMBA1 Russia_DevilsCave_N.SG 0.178
  239. gendstat: Tarim_EMBA1 Greece_Minoan_Lassithi -0.602
  240. gendstat: Tarim_EMBA1 Mongolia_North_N -0.996
  241. gendstat: Tarim_EMBA1 Greece_Peloponnese_N -0.649
  242. gendstat: Tarim_EMBA1 ONG.SG -0.711
  243. gendstat: CHG Balkan_HG 0.927
  244. gendstat: CHG Iran_N 1.945
  245. gendstat: CHG EHG 0.360
  246. gendstat: CHG Turkey_N.SG 0.832
  247. gendstat: CHG Russia_MLBA_Sintashta 1.272
  248. gendstat: CHG Switzerland_Bichon.SG -0.490
  249. gendstat: CHG Natufian 0.768
  250. gendstat: CHG Russia_DevilsCave_N.SG 1.708
  251. gendstat: CHG Greece_Minoan_Lassithi 1.092
  252. gendstat: CHG Mongolia_North_N 0.762
  253. gendstat: CHG Greece_Peloponnese_N 1.102
  254. gendstat: CHG ONG.SG 0.922
  255. gendstat: Balkan_HG Iran_N 1.074
  256. gendstat: Balkan_HG EHG -0.623
  257. gendstat: Balkan_HG Turkey_N.SG -0.044
  258. gendstat: Balkan_HG Russia_MLBA_Sintashta 0.296
  259. gendstat: Balkan_HG Switzerland_Bichon.SG -1.770
  260. gendstat: Balkan_HG Natufian 0.167
  261. gendstat: Balkan_HG Russia_DevilsCave_N.SG 1.040
  262. gendstat: Balkan_HG Greece_Minoan_Lassithi 0.227
  263. gendstat: Balkan_HG Mongolia_North_N -0.099
  264. gendstat: Balkan_HG Greece_Peloponnese_N 0.214
  265. gendstat: Balkan_HG ONG.SG 0.128
  266. gendstat: Iran_N EHG -1.387
  267. gendstat: Iran_N Turkey_N.SG -1.063
  268. gendstat: Iran_N Russia_MLBA_Sintashta -1.128
  269. gendstat: Iran_N Switzerland_Bichon.SG -2.039
  270. gendstat: Iran_N Natufian -0.533
  271. gendstat: Iran_N Russia_DevilsCave_N.SG 0.050
  272. gendstat: Iran_N Greece_Minoan_Lassithi -0.863
  273. gendstat: Iran_N Mongolia_North_N -1.108
  274. gendstat: Iran_N Greece_Peloponnese_N -0.952
  275. gendstat: Iran_N ONG.SG -0.842
  276. gendstat: EHG Turkey_N.SG 0.447
  277. gendstat: EHG Russia_MLBA_Sintashta 0.860
  278. gendstat: EHG Switzerland_Bichon.SG -0.891
  279. gendstat: EHG Natufian 0.484
  280. gendstat: EHG Russia_DevilsCave_N.SG 1.420
  281. gendstat: EHG Greece_Minoan_Lassithi 0.671
  282. gendstat: EHG Mongolia_North_N 0.411
  283. gendstat: EHG Greece_Peloponnese_N 0.680
  284. gendstat: EHG ONG.SG 0.582
  285. gendstat: Turkey_N.SG Russia_MLBA_Sintashta 0.274
  286. gendstat: Turkey_N.SG Switzerland_Bichon.SG -1.285
  287. gendstat: Turkey_N.SG Natufian 0.185
  288. gendstat: Turkey_N.SG Russia_DevilsCave_N.SG 0.968
  289. gendstat: Turkey_N.SG Greece_Minoan_Lassithi 0.283
  290. gendstat: Turkey_N.SG Mongolia_North_N -0.051
  291. gendstat: Turkey_N.SG Greece_Peloponnese_N 0.288
  292. gendstat: Turkey_N.SG ONG.SG 0.150
  293. gendstat: Russia_MLBA_Sintashta Switzerland_Bichon.SG -1.684
  294. gendstat: Russia_MLBA_Sintashta Natufian 0.051
  295. gendstat: Russia_MLBA_Sintashta Russia_DevilsCave_N.SG 1.010
  296. gendstat: Russia_MLBA_Sintashta Greece_Minoan_Lassithi 0.052
  297. gendstat: Russia_MLBA_Sintashta Mongolia_North_N -0.318
  298. gendstat: Russia_MLBA_Sintashta Greece_Peloponnese_N 0.018
  299. gendstat: Russia_MLBA_Sintashta ONG.SG -0.049
  300. gendstat: Switzerland_Bichon.SG Natufian 1.109
  301. gendstat: Switzerland_Bichon.SG Russia_DevilsCave_N.SG 1.944
  302. gendstat: Switzerland_Bichon.SG Greece_Minoan_Lassithi 1.425
  303. gendstat: Switzerland_Bichon.SG Mongolia_North_N 1.166
  304. gendstat: Switzerland_Bichon.SG Greece_Peloponnese_N 1.463
  305. gendstat: Switzerland_Bichon.SG ONG.SG 1.312
  306. gendstat: Natufian Russia_DevilsCave_N.SG 0.530
  307. gendstat: Natufian Greece_Minoan_Lassithi -0.021
  308. gendstat: Natufian Mongolia_North_N -0.217
  309. gendstat: Natufian Greece_Peloponnese_N -0.041
  310. gendstat: Natufian ONG.SG -0.072
  311. gendstat: Russia_DevilsCave_N.SG Greece_Minoan_Lassithi -0.775
  312. gendstat: Russia_DevilsCave_N.SG Mongolia_North_N -1.536
  313. gendstat: Russia_DevilsCave_N.SG Greece_Peloponnese_N -0.823
  314. gendstat: Russia_DevilsCave_N.SG ONG.SG -1.004
  315. gendstat: Greece_Minoan_Lassithi Mongolia_North_N -0.281
  316. gendstat: Greece_Minoan_Lassithi Greece_Peloponnese_N -0.033
  317. gendstat: Greece_Minoan_Lassithi ONG.SG -0.075
  318. gendstat: Mongolia_North_N Greece_Peloponnese_N 0.269
  319. gendstat: Mongolia_North_N ONG.SG 0.263
  320. gendstat: Greece_Peloponnese_N ONG.SG -0.053
  321.  
  322. ##end of qpAdm: 25.042 seconds cpu 1.597 Mbytes in use
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