conda update anaconda-navigator

(base) jhongesell@jhongesell-Lenovo-G400:~$ conda update anaconda-navigator
WARNING conda.base.context:use_only_tar_bz2(632): Conda is constrained to only using the old .tar.bz2 file format because you have conda-build installed, and it is <3.18.3.  Update or remove conda-build to get smaller downloads and faster extractions.

Collecting package metadata (repodata.json): done
Solving environment: \
The environment is inconsistent, please check the package plan carefully
The following packages are causing the inconsistency:

  - defaults/linux-64::nbconvert==5.3.1=py37_0
  - defaults/linux-64::ipywidgets==7.4.2=py37_0
  - defaults/linux-64::jupyterlab==0.35.3=py37_0
  - defaults/linux-64::widgetsnbextension==3.4.2=py37_0
  - defaults/linux-64::notebook==5.7.2=py37_0
  - defaults/linux-64::jupyterlab_server==0.2.0=py37_0
  - defaults/linux-64::_ipyw_jlab_nb_ext_conf==0.1.0=py37_0
  - defaults/linux-64::jupyter==1.0.0=py37_7
  - defaults/linux-64::spyder==3.3.1=py37_1
  - defaults/linux-64::jupyterlab_launcher==0.13.1=py37_0
  - defaults/linux-64::anaconda==5.3.1=py37_0
done

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/models/prefix_graph.py", line 252, in _topo_sort_handle_cycles
        value = next(t)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/models/prefix_graph.py", line 230, in _toposort_raise_on_cycles
        raise CyclicalDependencyError(tuple(graph))
    conda.exceptions.CyclicalDependencyError: Cyclic dependencies exist among these items:
      - defaults::_anaconda_depends-2019.03-py37_0
      - defaults::anaconda-custom-py37_1
      - defaults::astropy-3.2.1-py37h7b6447c_0
      - defaults::bkcharts-0.2-py37_0
      - defaults::bokeh-1.2.0-py37_0
      - defaults::bottleneck-1.2.1-py37h035aef0_1
      - defaults::dask-2.1.0-py_0
      - defaults::fast-histogram-0.7-py37hdd07704_1000
      - defaults::glue-core-0.14.2-py37_0
      - defaults::glue-vispy-viewers-0.11-py_0
      - defaults::glueviz-0.13.3-0
      - defaults::h5py-2.9.0-py37h7918eee_0
      - defaults::imageio-2.5.0-py37_0
      - defaults::matplotlib-3.1.0-py37h5429711_0
      - defaults::mkl-service-2.0.2-py37h7b6447c_0
      - defaults::mkl_fft-1.0.12-py37ha843d7b_0
      - defaults::mpl-scatter-density-0.5-py_0
      - defaults::numba-0.44.1-py37h962f231_0
      - defaults::numexpr-2.6.9-py37h9e4a6bb_0
      - defaults::numpy-1.16.4-py37h7e9f1db_0
      - defaults::orange3-3.17.0-py37h962f231_0
      - defaults::pandas-0.24.2-py37he6710b0_0
      - defaults::patsy-0.5.1-py37_0
      - defaults::pyqtgraph-0.10.0-py37h28b3542_3
      - defaults::pytables-3.5.2-py37h71ec239_1
      - defaults::pytest-arraydiff-0.3-py37h39e3cac_0
      - defaults::pytest-astropy-0.4.0-py37_0
      - defaults::pytest-doctestplus-0.3.0-py37_0
      - defaults::python-louvain-0.13-py_0
      - defaults::pywavelets-1.0.3-py37hdd07704_1
      - defaults::scikit-image-0.15.0-py37he6710b0_0
      - defaults::scikit-learn-0.21.2-py37hd81dba3_0
      - defaults::scipy-1.2.1-py37h7c811a0_0
      - defaults::seaborn-0.9.0-py37_0
      - defaults::statsmodels-0.10.0-py37hdd07704_0
      - defaults::mkl_fft-1.0.6-py37h7dd41cf_0
      - defaults::blaze-0.11.3-py37_0
      - defaults::astropy-3.0.5-py37h7b6447c_0
      - defaults::scipy-1.1.0-py37hfa4b5c9_1
      - defaults::scikit-learn-0.20.1-py37h4989274_0
      - defaults::bokeh-1.0.1-py37_0
      - defaults::glue-core-0.13.4-py37_0
      - defaults::matplotlib-3.0.1-py37h5429711_0
      - defaults::pytest-doctestplus-0.2.0-py37_0
      - defaults::numexpr-2.6.8-py37hd89afb7_0
      - defaults::mkl_random-1.0.1-py37h4414c95_1
      - defaults::pytest-arraydiff-0.2-py37h39e3cac_0
      - defaults::mpl-scatter-density-0.4-py37_0
      - defaults::dask-0.20.2-py37_0
      - defaults::numba-0.40.0-py37h962f231_0
      - defaults::fast-histogram-0.5-py37hdd07704_1
      - defaults::pandas-0.23.4-py37h04863e7_0
      - defaults::glue-vispy-viewers-0.10-py37_0
      - defaults::imageio-2.4.1-py37_0
      - defaults::odo-0.5.1-py37_0
      - defaults::pytables-3.4.4-py37ha205bf6_0
      - defaults::datashape-0.5.4-py37_1
      - defaults::pywavelets-1.0.1-py37hdd07704_0
      - defaults::statsmodels-0.9.0-py37h035aef0_0
      - defaults::scikit-image-0.14.0-py37hf484d3e_1
      - defaults::h5py-2.8.0-py37h989c5e5_3
      - defaults::numpy-1.15.4-py37h1d66e8a_0

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/exceptions.py", line 1043, in __call__
        return func(*args, **kwargs)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/cli/main.py", line 84, in _main
        exit_code = do_call(args, p)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/cli/conda_argparse.py", line 82, in do_call
        exit_code = getattr(module, func_name)(args, parser)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/cli/main_update.py", line 20, in execute
        install(args, parser, 'update')
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/cli/install.py", line 280, in install
        force_reinstall=context.force_reinstall or context.force,
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 112, in solve_for_transaction
        force_remove, force_reinstall)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 150, in solve_for_diff
        force_remove)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/core/solve.py", line 261, in solve_final_state
        ssc.solution_precs = IndexedSet(PrefixGraph(ssc.solution_precs).graph)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/models/prefix_graph.py", line 47, in __init__
        self._toposort()
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/models/prefix_graph.py", line 202, in _toposort
        sorted_nodes = tuple(self._topo_sort_handle_cycles(graph_copy))
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/models/prefix_graph.py", line 259, in _topo_sort_handle_cycles
        yield cls._toposort_pop_key(graph)
      File "/home/jhongesell/anaconda3/lib/python3.7/site-packages/conda/models/prefix_graph.py", line 274, in _toposort_pop_key
        (len(parents), node.name, node) for node, parents in iteritems(graph)
    TypeError: '<' not supported between instances of 'PrefixRecord' and 'PackageRecord'

`$ /home/jhongesell/anaconda3/bin/conda update anaconda-navigator`

  environment variables:
                 CIO_TEST=<not set>
        CONDA_DEFAULT_ENV=base
                CONDA_EXE=/home/jhongesell/anaconda3/bin/conda
             CONDA_PREFIX=/home/jhongesell/anaconda3
    CONDA_PROMPT_MODIFIER=(base)
         CONDA_PYTHON_EXE=/home/jhongesell/anaconda3/bin/python
               CONDA_ROOT=/home/jhongesell/anaconda3
              CONDA_SHLVL=1
            DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path
           MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path
                     PATH=/home/jhongesell/anaconda3/bin:/home/jhongesell/anaconda3/bin:/home/jh
                          ongesell/anaconda3/bin:/home/jhongesell/anaconda3/condabin:/usr/local/
                          sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/loca
                          l/games:/snap/bin:/home/jhongesell/.dotnet/tools
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>
               WINDOWPATH=2

     active environment : base
    active env location : /home/jhongesell/anaconda3
            shell level : 1
       user config file : /home/jhongesell/.condarc
 populated config files : /home/jhongesell/.condarc
          conda version : 4.7.5
    conda-build version : 3.16.3
         python version : 3.7.3.final.0
       virtual packages :
       base environment : /home/jhongesell/anaconda3  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/jhongesell/anaconda3/pkgs
                          /home/jhongesell/.conda/pkgs
       envs directories : /home/jhongesell/anaconda3/envs
                          /home/jhongesell/.conda/envs
               platform : linux-64
             user-agent : conda/4.7.5 requests/2.22.0 CPython/3.7.3 Linux/4.15.0-54-generic ubuntu/18.04.2 glibc/2.27
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False


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