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Legend_9813

Pashtun_Barakzai qpAdm

Legend_9813
Jun 26th, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. inbreed: NO
  10. allsnps: YES
  11. details: YES
  12. ## qpAdm version: 1520
  13. seed: 24943506
  14. inbreed set NO
  15. inbreed set NO
  16. tmp: /tmp/fsx.760
  17.  
  18. left pops:
  19. Pashtun_Barakzai
  20. Indus_medAASI
  21. Uzbekistan_SappaliTepe_BA
  22. Russia_Andronovo.SG
  23.  
  24. right pops:
  25. Mbuti.DG
  26. EHG
  27. CHG
  28. WSHG
  29. Onge.DG
  30. Turkey_N
  31. Iraq_PPNA
  32. Levant_PPN
  33. CHN_Tarim_EMBA1
  34. Iran_GanjDareh_N
  35. Mongolia_North_N
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 2 dof: 9 chisq: 13.813 tail: 0.129146102 dofdiff: 11 chisqdiff: -13.813 taildiff: 1
  41. B:
  42. scale 1.000 1.000
  43. EHG 1.615 -0.623
  44. CHG 0.415 1.039
  45. WSHG 1.039 -0.698
  46. Onge.DG -0.387 -1.129
  47. Turkey_N 1.053 0.870
  48. Iraq_PPNA 0.339 1.335
  49. Levant_PPN 0.876 0.926
  50. CHN_Tarim_EMBA1 0.972 -0.837
  51. Iran_GanjDareh_N -0.477 1.593
  52. Mongolia_North_N -0.132 -0.997
  53. Serbia_IronGates_Mesolithic 1.953 -0.377
  54. A:
  55. scale 139.315 288.198
  56. Indus_medAASI -1.056 -1.098
  57. Uzbekistan_SappaliTepe_BA -0.242 1.263
  58. Russia_Andronovo.SG 1.351 -0.447
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 13.813 taildiff: 0.129146102
  64. B:
  65. scale 120.548 210.389 98.393
  66. EHG -1.149 -1.065 1.680
  67. CHG -1.126 0.471 0.059
  68. WSHG -0.396 -0.626 1.301
  69. Onge.DG 0.656 -1.182 -0.344
  70. Turkey_N -1.428 0.329 0.829
  71. Iraq_PPNA -0.871 1.178 0.137
  72. Levant_PPN -1.306 0.416 0.610
  73. CHN_Tarim_EMBA1 -0.595 -1.246 1.005
  74. Iran_GanjDareh_N -0.221 1.817 -0.616
  75. Mongolia_North_N 0.694 -0.667 0.116
  76. Serbia_IronGates_Mesolithic -1.562 -0.941 1.970
  77. A:
  78. scale 1.732 1.732 1.732
  79. Indus_medAASI 1.732 0.000 0.000
  80. Uzbekistan_SappaliTepe_BA 0.000 1.732 0.000
  81. Russia_Andronovo.SG 0.000 0.000 1.732
  82.  
  83.  
  84. best coefficients: 0.310 0.379 0.310
  85. totmean: 0.310 0.379 0.310
  86. boot mean: 0.310 0.379 0.311
  87. std. errors: 0.048 0.055 0.030
  88.  
  89. error covariance (* 1,000,000)
  90. 2324 -2245 -80
  91. -2245 3047 -803
  92. -80 -803 882
  93.  
  94.  
  95. summ: Pashtun_Barakzai 3 0.129146 0.310 0.379 0.311 2324 -2245 -80 3047 -803 ...
  96. 882
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 000 0 9 13.813 0.129146 0.310 0.379 0.310
  100. 001 1 10 128.093 1.14386e-22 0.354 0.646 0.000
  101. 010 1 10 59.367 4.7744e-09 0.605 0.000 0.395
  102. 100 1 10 57.129 1.26047e-08 0.000 0.677 0.323
  103. 011 2 11 237.701 0 1.000 0.000 0.000
  104. 101 2 11 175.432 0 0.000 1.000 0.000
  105. 110 2 11 479.690 0 0.000 0.000 1.000
  106. best pat: 000 0.129146 - -
  107. best pat: 100 1.26047e-08 chi(nested): 43.317 p-value for nested model: 4.65631e-11
  108. best pat: 101 8.97596e-32 chi(nested): 118.302 p-value for nested model: 1.48864e-27
  109.  
  110. coeffs: 0.310 0.379 0.310
  111.  
  112. ## dscore:: f_4(Base, Fit, Rbase, right2)
  113. ## genstat:: f_4(Base, Fit, right1, right2)
  114.  
  115. details: Indus_medAASI EHG -0.009535 -6.328303
  116. details: Uzbekistan_SappaliTepe_BA EHG -0.005060 -3.856813
  117. details: Russia_Andronovo.SG EHG 0.017077 12.224143
  118. dscore: EHG f4: 0.000425 Z: 0.334465
  119.  
  120. details: Indus_medAASI CHG -0.009340 -5.480593
  121. details: Uzbekistan_SappaliTepe_BA CHG 0.002238 1.618636
  122. details: Russia_Andronovo.SG CHG 0.000599 0.393650
  123. dscore: CHG f4: -0.001861 Z: -1.356579
  124.  
  125. details: Indus_medAASI WSHG -0.003283 -1.766921
  126. details: Uzbekistan_SappaliTepe_BA WSHG -0.002977 -1.874855
  127. details: Russia_Andronovo.SG WSHG 0.013220 7.641322
  128. dscore: WSHG f4: 0.001957 Z: 1.251783
  129.  
  130. details: Indus_medAASI Onge.DG 0.005442 3.265575
  131. details: Uzbekistan_SappaliTepe_BA Onge.DG -0.005619 -4.183238
  132. details: Russia_Andronovo.SG Onge.DG -0.003495 -2.310051
  133. dscore: Onge.DG f4: -0.001529 Z: -1.136223
  134.  
  135. details: Indus_medAASI Turkey_N -0.011842 -8.678295
  136. details: Uzbekistan_SappaliTepe_BA Turkey_N 0.001566 1.394155
  137. details: Russia_Andronovo.SG Turkey_N 0.008422 6.781899
  138. dscore: Turkey_N f4: -0.000463 Z: -0.408499
  139.  
  140. details: Indus_medAASI Iraq_PPNA -0.007226 -3.699673
  141. details: Uzbekistan_SappaliTepe_BA Iraq_PPNA 0.005597 3.360704
  142. details: Russia_Andronovo.SG Iraq_PPNA 0.001392 0.796305
  143. dscore: Iraq_PPNA f4: 0.000315 Z: 0.193078
  144.  
  145. details: Indus_medAASI Levant_PPN -0.010831 -6.792801
  146. details: Uzbekistan_SappaliTepe_BA Levant_PPN 0.001978 1.450754
  147. details: Russia_Andronovo.SG Levant_PPN 0.006201 4.135779
  148. dscore: Levant_PPN f4: -0.000683 Z: -0.506570
  149.  
  150. details: Indus_medAASI CHN_Tarim_EMBA1 -0.004936 -2.844530
  151. details: Uzbekistan_SappaliTepe_BA CHN_Tarim_EMBA1 -0.005923 -3.898984
  152. details: Russia_Andronovo.SG CHN_Tarim_EMBA1 0.010214 6.258103
  153. dscore: CHN_Tarim_EMBA1 f4: -0.000607 Z: -0.412565
  154.  
  155. details: Indus_medAASI Iran_GanjDareh_N -0.001831 -1.268487
  156. details: Uzbekistan_SappaliTepe_BA Iran_GanjDareh_N 0.008639 6.950074
  157. details: Russia_Andronovo.SG Iran_GanjDareh_N -0.006265 -4.742840
  158. dscore: Iran_GanjDareh_N f4: 0.000765 Z: 0.633668
  159.  
  160. details: Indus_medAASI Mongolia_North_N 0.005754 3.745794
  161. details: Uzbekistan_SappaliTepe_BA Mongolia_North_N -0.003170 -2.367260
  162. details: Russia_Andronovo.SG Mongolia_North_N 0.001179 0.814739
  163. dscore: Mongolia_North_N f4: 0.000948 Z: 0.722326
  164.  
  165. details: Indus_medAASI Serbia_IronGates_Mesolithic -0.012955 -8.818190
  166. details: Uzbekistan_SappaliTepe_BA Serbia_IronGates_Mesolithic -0.004474 -3.469210
  167. details: Russia_Andronovo.SG Serbia_IronGates_Mesolithic 0.020024 14.763650
  168. dscore: Serbia_IronGates_Mesolithic f4: 0.000502 Z: 0.402555
  169.  
  170. gendstat: Mbuti.DG EHG 0.334
  171. gendstat: Mbuti.DG CHG -1.357
  172. gendstat: Mbuti.DG WSHG 1.252
  173. gendstat: Mbuti.DG Onge.DG -1.136
  174. gendstat: Mbuti.DG Turkey_N -0.408
  175. gendstat: Mbuti.DG Iraq_PPNA 0.193
  176. gendstat: Mbuti.DG Levant_PPN -0.507
  177. gendstat: Mbuti.DG CHN_Tarim_EMBA1 -0.413
  178. gendstat: Mbuti.DG Iran_GanjDareh_N 0.634
  179. gendstat: Mbuti.DG Mongolia_North_N 0.722
  180. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.403
  181. gendstat: EHG CHG -1.678
  182. gendstat: EHG WSHG 1.271
  183. gendstat: EHG Onge.DG -1.373
  184. gendstat: EHG Turkey_N -0.807
  185. gendstat: EHG Iraq_PPNA -0.067
  186. gendstat: EHG Levant_PPN -0.826
  187. gendstat: EHG CHN_Tarim_EMBA1 -0.933
  188. gendstat: EHG Iran_GanjDareh_N 0.273
  189. gendstat: EHG Mongolia_North_N 0.404
  190. gendstat: EHG Serbia_IronGates_Mesolithic 0.088
  191. gendstat: CHG WSHG 2.388
  192. gendstat: CHG Onge.DG 0.208
  193. gendstat: CHG Turkey_N 1.095
  194. gendstat: CHG Iraq_PPNA 1.266
  195. gendstat: CHG Levant_PPN 0.792
  196. gendstat: CHG CHN_Tarim_EMBA1 0.804
  197. gendstat: CHG Iran_GanjDareh_N 2.050
  198. gendstat: CHG Mongolia_North_N 1.818
  199. gendstat: CHG Serbia_IronGates_Mesolithic 1.733
  200. gendstat: WSHG Onge.DG -2.152
  201. gendstat: WSHG Turkey_N -1.624
  202. gendstat: WSHG Iraq_PPNA -0.882
  203. gendstat: WSHG Levant_PPN -1.597
  204. gendstat: WSHG CHN_Tarim_EMBA1 -1.974
  205. gendstat: WSHG Iran_GanjDareh_N -0.800
  206. gendstat: WSHG Mongolia_North_N -0.655
  207. gendstat: WSHG Serbia_IronGates_Mesolithic -1.056
  208. gendstat: Onge.DG Turkey_N 0.774
  209. gendstat: Onge.DG Iraq_PPNA 0.961
  210. gendstat: Onge.DG Levant_PPN 0.531
  211. gendstat: Onge.DG CHN_Tarim_EMBA1 0.582
  212. gendstat: Onge.DG Iran_GanjDareh_N 1.551
  213. gendstat: Onge.DG Mongolia_North_N 1.930
  214. gendstat: Onge.DG Serbia_IronGates_Mesolithic 1.416
  215. gendstat: Turkey_N Iraq_PPNA 0.536
  216. gendstat: Turkey_N Levant_PPN -0.221
  217. gendstat: Turkey_N CHN_Tarim_EMBA1 -0.101
  218. gendstat: Turkey_N Iran_GanjDareh_N 1.113
  219. gendstat: Turkey_N Mongolia_North_N 1.026
  220. gendstat: Turkey_N Serbia_IronGates_Mesolithic 1.026
  221. gendstat: Iraq_PPNA Levant_PPN -0.594
  222. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 -0.500
  223. gendstat: Iraq_PPNA Iran_GanjDareh_N 0.281
  224. gendstat: Iraq_PPNA Mongolia_North_N 0.343
  225. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic 0.118
  226. gendstat: Levant_PPN CHN_Tarim_EMBA1 0.048
  227. gendstat: Levant_PPN Iran_GanjDareh_N 1.107
  228. gendstat: Levant_PPN Mongolia_North_N 1.030
  229. gendstat: Levant_PPN Serbia_IronGates_Mesolithic 0.937
  230. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N 0.989
  231. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N 1.118
  232. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.817
  233. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.133
  234. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.214
  235. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.339
  236.  
  237. removing /tmp/fsx.760
  238. ##end of qpAdm: 3.701 seconds cpu 1.016 Mbytes in use
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