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misnomer001

Sarazm doesnt need EHG

misnomer001
Aug 19th, 2022
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa5.txt
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 2121653118
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. Tajikistan_C_Sarazm
  18. Iran_GanjDareh_N
  19. Turkey_N
  20. CHG_Kotias
  21. Tarim_EMBA1
  22. EHG
  23.  
  24. right pops:
  25. Mbuti.DG
  26. ONG.SG
  27. CHG_Satsurblia
  28. Serbia_IronGates_Mesolithic
  29. WSHG
  30. Russia_Shamanka_Eneolithic.SG
  31. PPN
  32.  
  33. codimension 1
  34. f4info:
  35. f4rank: 4 dof: 2 chisq: 4.962 tail: 0.0836534667 dofdiff: 4 chisqdiff: -4.962 taildiff: 1
  36. B:
  37. scale 1.000 1.000 1.000 1.000
  38. ONG.SG 0.472 -0.251 -0.120 0.578
  39. CHG_Satsurblia -0.376 -0.466 2.301 0.030
  40. Serbia_IronGates_Mesolithic 0.894 1.682 0.741 -1.506
  41. WSHG 2.010 -0.383 -0.037 -0.099
  42. Russia_Shamanka_Eneolithic.SG 0.878 -0.386 -0.124 0.945
  43. PPN -0.160 1.611 -0.355 1.579
  44. A:
  45. scale 199.406 430.312 532.377 1044.750
  46. Iran_GanjDareh_N -0.534 -0.174 -0.476 -0.655
  47. Turkey_N -0.355 1.895 -0.239 0.934
  48. CHG_Kotias -0.342 0.074 2.149 0.960
  49. Tarim_EMBA1 1.662 -0.607 -0.246 0.792
  50. EHG 1.307 1.003 0.193 -1.466
  51.  
  52.  
  53. full rank
  54. f4info:
  55. f4rank: 5 dof: 0 chisq: 0.000 tail: 1 dofdiff: 2 chisqdiff: 4.962 taildiff: 0.0836534667
  56. B:
  57. scale 360.878 206.868 227.391 118.214 134.875
  58. ONG.SG -0.588 -0.302 -0.201 0.557 0.210
  59. CHG_Satsurblia -0.334 -0.484 2.262 -0.415 -0.359
  60. Serbia_IronGates_Mesolithic -0.984 0.882 0.127 0.438 1.666
  61. WSHG -1.926 -1.129 -0.882 2.029 1.667
  62. Russia_Shamanka_Eneolithic.SG -0.863 -0.423 -0.179 1.067 0.520
  63. PPN -0.347 1.855 0.136 -0.266 0.059
  64. A:
  65. scale 2.236 2.236 2.236 2.236 2.236
  66. Iran_GanjDareh_N 2.236 0.000 0.000 0.000 0.000
  67. Turkey_N 0.000 2.236 0.000 0.000 0.000
  68. CHG_Kotias 0.000 0.000 2.236 0.000 0.000
  69. Tarim_EMBA1 0.000 0.000 0.000 2.236 0.000
  70. EHG 0.000 0.000 0.000 0.000 2.236
  71.  
  72.  
  73. best coefficients: 0.532 0.093 0.149 0.200 0.027
  74. totmean: 0.532 0.093 0.149 0.200 0.027
  75. boot mean: 0.532 0.093 0.148 0.200 0.027
  76. std. errors: 0.070 0.036 0.045 0.029 0.030
  77.  
  78. error covariance (* 1,000,000)
  79. 4912 -1769 -2736 -1483 1075
  80. -1769 1267 516 738 -752
  81. -2736 516 2067 622 -470
  82. -1483 738 622 848 -725
  83. 1075 -752 -470 -725 873
  84.  
  85.  
  86. summ: Tajikistan_C_Sarazm 5 0.083653 0.532 0.093 0.148 0.200 0.027 4912 -1769 -2736 -1483 1075 ...
  87. 1267 516 738 -752 2067 ...
  88. 622 -470 848 -725 873
  89.  
  90. fixed pat wt dof chisq tail prob
  91. 00000 0 2 4.962 0.0836535 0.532 0.093 0.149 0.200 0.027
  92. 00001 1 3 207.636 0 0.594 0.097 0.112 0.198 0.000
  93. 00010 1 3 41.294 5.66511e-09 0.913 -0.096 -0.012 0.000 0.195 infeasible
  94. 00100 1 3 14.546 0.00224884 0.723 0.060 0.000 0.155 0.062
  95. 01000 1 3 9.977 0.0187604 0.672 0.000 0.103 0.143 0.082
  96. 10000 1 3 60.596 4.38534e-13 0.000 0.298 0.447 0.366 -0.111 infeasible
  97. 00011 2 4 146.478 1.15713e-30 1.249 -0.055 -0.194 0.000 0.000 infeasible
  98. 00101 2 4 19.301 0.000685761 0.691 0.105 0.000 0.204 0.000
  99. 00110 2 4 41.948 1.70977e-08 0.906 -0.099 0.000 0.000 0.193 infeasible
  100. 01001 2 4 280.925 0 0.205 0.000 0.582 0.213 0.000
  101. 01010 2 4 52.648 1.00957e-10 0.855 0.000 -0.029 0.000 0.174 infeasible
  102. 01100 2 4 15.533 0.00371401 0.776 0.000 0.000 0.129 0.095
  103. 10001 2 4 76.620 9.05219e-16 0.000 0.228 0.481 0.291 0.000
  104. 10010 2 4 244.981 0 0.000 0.013 0.773 0.000 0.213
  105. 10100 2 4 374.320 0 0.000 0.710 0.000 0.574 -0.285 infeasible
  106. 11000 2 4 140.924 1.79021e-29 0.000 0.000 0.718 0.261 0.021
  107. 00111 3 5 148.070 3.4375e-30 1.036 -0.036 0.000 0.000 0.000 infeasible
  108. 01011 3 5 369.780 0 -6.591 0.000 7.591 0.000 0.000 infeasible
  109. 01101 3 5 33.684 2.75247e-06 0.817 0.000 0.000 0.183 0.000
  110. 01110 3 5 52.050 5.26777e-10 0.823 0.000 0.000 0.000 0.177
  111. 10011 3 5 319.682 0 0.000 0.015 0.985 0.000 0.000
  112. 10101 3 5 479.474 0 0.000 0.594 0.000 0.406 0.000
  113. 10110 3 5 1025.191 0 0.000 0.648 0.000 0.000 0.352
  114. 11001 3 5 142.832 4.47306e-29 0.000 0.000 0.730 0.270 0.000
  115. 11010 3 5 246.406 0 0.000 0.000 0.789 0.000 0.211
  116. 11100 3 5 1858.355 0 0.000 0.000 0.000 0.380 0.620
  117. 01111 4 6 149.123 1.18592e-29 1.000 0.000 0.000 0.000 0.000
  118. 10111 4 6 1350.266 0 0.000 1.000 0.000 0.000 0.000
  119. 11011 4 6 319.325 0 0.000 0.000 1.000 0.000 0.000
  120. 11101 4 6 1999.048 0 0.000 0.000 0.000 1.000 0.000
  121. 11110 4 6 1890.356 0 0.000 0.000 0.000 0.000 1.000
  122. best pat: 00000 0.0836535 - -
  123. best pat: 01000 0.0187604 chi(nested): 5.015 p-value for nested model: 0.0251269
  124. best pat: 01100 0.00371401 chi(nested): 5.556 p-value for nested model: 0.0184183
  125. best pat: 01101 2.75247e-06 chi(nested): 18.150 p-value for nested model: 2.04125e-05
  126. best pat: 01111 1.18592e-29 chi(nested): 115.439 p-value for nested model: 6.30651e-27
  127.  
  128. coeffs: 0.532 0.093 0.149 0.200 0.027
  129.  
  130. ## dscore:: f_4(Base, Fit, Rbase, right2)
  131. ## genstat:: f_4(Base, Fit, right1, right2)
  132.  
  133. details: Iran_GanjDareh_N ONG.SG -0.001629 -4.187219
  134. details: Turkey_N ONG.SG -0.001459 -3.977802
  135. details: CHG_Kotias ONG.SG -0.000883 -1.842168
  136. details: Tarim_EMBA1 ONG.SG 0.004708 10.881208
  137. details: EHG ONG.SG 0.001557 3.637845
  138. dscore: ONG.SG f4: -0.000149 Z: -0.431856
  139.  
  140. details: Iran_GanjDareh_N CHG_Satsurblia -0.000927 -1.794488
  141. details: Turkey_N CHG_Satsurblia -0.002341 -4.781652
  142. details: CHG_Kotias CHG_Satsurblia 0.009947 13.564333
  143. details: Tarim_EMBA1 CHG_Satsurblia -0.003514 -6.178974
  144. details: EHG CHG_Satsurblia -0.002659 -4.577372
  145. dscore: CHG_Satsurblia f4: -0.000007 Z: -0.014376
  146.  
  147. details: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.002728 -7.767171
  148. details: Turkey_N Serbia_IronGates_Mesolithic 0.004265 12.676267
  149. details: CHG_Kotias Serbia_IronGates_Mesolithic 0.000559 1.202887
  150. details: Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.003709 9.644544
  151. details: EHG Serbia_IronGates_Mesolithic 0.012353 31.764739
  152. dscore: Serbia_IronGates_Mesolithic f4: 0.000104 Z: 0.337953
  153.  
  154. details: Iran_GanjDareh_N WSHG -0.005336 -11.740527
  155. details: Turkey_N WSHG -0.005459 -13.121728
  156. details: CHG_Kotias WSHG -0.003877 -6.862797
  157. details: Tarim_EMBA1 WSHG 0.017163 33.538529
  158. details: EHG WSHG 0.012357 24.883500
  159. dscore: WSHG f4: -0.000155 Z: -0.384492
  160.  
  161. details: Iran_GanjDareh_N Russia_Shamanka_Eneolithic.SG -0.002392 -6.656109
  162. details: Turkey_N Russia_Shamanka_Eneolithic.SG -0.002046 -5.932842
  163. details: CHG_Kotias Russia_Shamanka_Eneolithic.SG -0.000787 -1.705634
  164. details: Tarim_EMBA1 Russia_Shamanka_Eneolithic.SG 0.009024 21.672681
  165. details: EHG Russia_Shamanka_Eneolithic.SG 0.003854 9.461855
  166. dscore: Russia_Shamanka_Eneolithic.SG f4: 0.000330 Z: 1.022578
  167.  
  168. details: Iran_GanjDareh_N PPN -0.000961 -2.545556
  169. details: Turkey_N PPN 0.008967 23.761214
  170. details: CHG_Kotias PPN 0.000599 1.182331
  171. details: Tarim_EMBA1 PPN -0.002252 -5.136358
  172. details: EHG PPN 0.000436 0.992679
  173. dscore: PPN f4: -0.000028 Z: -0.082332
  174.  
  175. gendstat: Mbuti.DG ONG.SG -0.432
  176. gendstat: Mbuti.DG CHG_Satsurblia -0.014
  177. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.338
  178. gendstat: Mbuti.DG WSHG -0.384
  179. gendstat: Mbuti.DG Russia_Shamanka_Eneolithic.SG 1.023
  180. gendstat: Mbuti.DG PPN -0.082
  181. gendstat: ONG.SG CHG_Satsurblia 0.307
  182. gendstat: ONG.SG Serbia_IronGates_Mesolithic 0.759
  183. gendstat: ONG.SG WSHG -0.014
  184. gendstat: ONG.SG Russia_Shamanka_Eneolithic.SG 1.804
  185. gendstat: ONG.SG PPN 0.301
  186. gendstat: CHG_Satsurblia Serbia_IronGates_Mesolithic 0.256
  187. gendstat: CHG_Satsurblia WSHG -0.302
  188. gendstat: CHG_Satsurblia Russia_Shamanka_Eneolithic.SG 0.768
  189. gendstat: CHG_Satsurblia PPN -0.045
  190. gendstat: Serbia_IronGates_Mesolithic WSHG -0.794
  191. gendstat: Serbia_IronGates_Mesolithic Russia_Shamanka_Eneolithic.SG 0.795
  192. gendstat: Serbia_IronGates_Mesolithic PPN -0.401
  193. gendstat: WSHG Russia_Shamanka_Eneolithic.SG 1.400
  194. gendstat: WSHG PPN 0.295
  195. gendstat: Russia_Shamanka_Eneolithic.SG PPN -0.971
  196.  
  197. ##end of qpAdm: 20.227 seconds cpu 0.922 Mbytes in use
  198.  
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