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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- S1: anatolia
- indivname: anatolia.ind
- snpname: anatolia.snp
- genotypename: anatolia.geno
- popleft: left
- popright: right
- details: YES
- allsnps: YES
- inbreed: NO
- ## qpAdm version: 1520
- seed: 2113670604
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.13117
- left pops:
- Turkey_Boncuklu_N
- Turkey_Epipaleolithic
- Iran_GanjDareh_N
- right pops:
- Mbuti.DG
- ONG.SG
- EHG
- CHG
- England_Mesolithic
- Morocco_Iberomaurusian
- IVC
- WSHG
- Tarim_EMBA1
- Israel_Natufian_published
- Spain_ElMiron
- Mongolia_North_N
- codimension 1
- f4info:
- f4rank: 1 dof: 10 chisq: 22.799 tail: 0.0115129752 dofdiff: 12 chisqdiff: -22.799 taildiff: 1
- B:
- scale 1.000
- ONG.SG 0.138
- EHG 0.891
- CHG -0.267
- England_Mesolithic 1.680
- Morocco_Iberomaurusian 1.012
- IVC -0.820
- WSHG 0.058
- Tarim_EMBA1 -0.134
- Israel_Natufian_published 1.815
- Spain_ElMiron 1.508
- Mongolia_North_N 0.090
- A:
- scale 104.520
- Turkey_Epipaleolithic 0.207
- Iran_GanjDareh_N -1.399
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 22.799 taildiff: 0.0115129752
- B:
- scale 476.370 73.478
- ONG.SG -0.522 -0.168
- EHG -0.130 -0.914
- CHG -1.813 0.206
- England_Mesolithic 0.732 -1.690
- Morocco_Iberomaurusian 0.450 -1.014
- IVC -1.815 0.762
- WSHG -0.314 -0.062
- Tarim_EMBA1 -0.986 0.094
- Israel_Natufian_published -0.111 -1.850
- Spain_ElMiron 1.241 -1.480
- Mongolia_North_N 0.877 -0.058
- A:
- scale 1.414 1.414
- Turkey_Epipaleolithic 1.414 0.000
- Iran_GanjDareh_N 0.000 1.414
- best coefficients: 0.871 0.129
- totmean: 0.871 0.129
- boot mean: 0.872 0.128
- std. errors: 0.029 0.029
- error covariance (* 1,000,000)
- 851 -851
- -851 851
- summ: Turkey_Boncuklu_N 2 0.011513 0.872 0.128 851 -851 851
- fixed pat wt dof chisq tail prob
- 00 0 10 22.799 0.011513 0.871 0.129
- 01 1 11 39.175 4.94723e-05 1.000 0.000
- 10 1 11 1064.630 0 0.000 1.000
- best pat: 00 0.011513 - -
- best pat: 01 4.94723e-05 chi(nested): 16.376 p-value for nested model: 5.19501e-05
- coeffs: 0.871 0.129
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_Epipaleolithic ONG.SG -0.001095 -0.797864
- details: Iran_GanjDareh_N ONG.SG -0.002286 -2.019851
- dscore: ONG.SG f4: -0.001249 Z: -1.007402
- details: Turkey_Epipaleolithic EHG -0.000274 -0.179917
- details: Iran_GanjDareh_N EHG -0.012440 -9.182883
- dscore: EHG f4: -0.001845 Z: -1.350899
- details: Turkey_Epipaleolithic CHG -0.003806 -2.560890
- details: Iran_GanjDareh_N CHG 0.002805 2.297402
- dscore: CHG f4: -0.002952 Z: -2.209494
- details: Turkey_Epipaleolithic England_Mesolithic 0.001536 0.856857
- details: Iran_GanjDareh_N England_Mesolithic -0.023004 -15.052483
- dscore: England_Mesolithic f4: -0.001633 Z: -1.008235
- details: Turkey_Epipaleolithic Morocco_Iberomaurusian 0.000944 0.759955
- details: Iran_GanjDareh_N Morocco_Iberomaurusian -0.013798 -13.091800
- dscore: Morocco_Iberomaurusian f4: -0.000959 Z: -0.849736
- details: Turkey_Epipaleolithic IVC -0.003810 -3.092277
- details: Iran_GanjDareh_N IVC 0.010370 9.983520
- dscore: IVC f4: -0.001979 Z: -1.776521
- details: Turkey_Epipaleolithic WSHG -0.000659 -0.432198
- details: Iran_GanjDareh_N WSHG -0.000847 -0.634365
- dscore: WSHG f4: -0.000683 Z: -0.497126
- details: Turkey_Epipaleolithic Tarim_EMBA1 -0.002070 -1.363896
- details: Iran_GanjDareh_N Tarim_EMBA1 0.001278 1.020259
- dscore: Tarim_EMBA1 f4: -0.001638 Z: -1.202562
- details: Turkey_Epipaleolithic Israel_Natufian_published -0.000233 -0.109662
- details: Iran_GanjDareh_N Israel_Natufian_published -0.025173 -15.218341
- dscore: Israel_Natufian_published f4: -0.003454 Z: -1.799031
- details: Turkey_Epipaleolithic Spain_ElMiron 0.002605 1.306900
- details: Iran_GanjDareh_N Spain_ElMiron -0.020145 -12.663096
- dscore: Spain_ElMiron f4: -0.000333 Z: -0.185187
- details: Turkey_Epipaleolithic Mongolia_North_N 0.001841 1.395513
- details: Iran_GanjDareh_N Mongolia_North_N -0.000790 -0.700795
- dscore: Mongolia_North_N f4: 0.001501 Z: 1.261155
- gendstat: Mbuti.DG ONG.SG -1.007
- gendstat: Mbuti.DG EHG -1.351
- gendstat: Mbuti.DG CHG -2.209
- gendstat: Mbuti.DG England_Mesolithic -1.008
- gendstat: Mbuti.DG Morocco_Iberomaurusian -0.850
- gendstat: Mbuti.DG IVC -1.777
- gendstat: Mbuti.DG WSHG -0.497
- gendstat: Mbuti.DG Tarim_EMBA1 -1.203
- gendstat: Mbuti.DG Israel_Natufian_published -1.799
- gendstat: Mbuti.DG Spain_ElMiron -0.185
- gendstat: Mbuti.DG Mongolia_North_N 1.261
- gendstat: ONG.SG EHG -0.421
- gendstat: ONG.SG CHG -1.189
- gendstat: ONG.SG England_Mesolithic -0.230
- gendstat: ONG.SG Morocco_Iberomaurusian 0.210
- gendstat: ONG.SG IVC -0.636
- gendstat: ONG.SG WSHG 0.420
- gendstat: ONG.SG Tarim_EMBA1 -0.297
- gendstat: ONG.SG Israel_Natufian_published -1.077
- gendstat: ONG.SG Spain_ElMiron 0.516
- gendstat: ONG.SG Mongolia_North_N 2.603
- gendstat: EHG CHG -0.776
- gendstat: EHG England_Mesolithic 0.136
- gendstat: EHG Morocco_Iberomaurusian 0.606
- gendstat: EHG IVC -0.109
- gendstat: EHG WSHG 0.903
- gendstat: EHG Tarim_EMBA1 0.168
- gendstat: EHG Israel_Natufian_published -0.783
- gendstat: EHG Spain_ElMiron 0.861
- gendstat: EHG Mongolia_North_N 2.559
- gendstat: CHG England_Mesolithic 0.747
- gendstat: CHG Morocco_Iberomaurusian 1.358
- gendstat: CHG IVC 0.755
- gendstat: CHG WSHG 1.520
- gendstat: CHG Tarim_EMBA1 0.895
- gendstat: CHG Israel_Natufian_published -0.231
- gendstat: CHG Spain_ElMiron 1.403
- gendstat: CHG Mongolia_North_N 3.287
- gendstat: England_Mesolithic Morocco_Iberomaurusian 0.409
- gendstat: England_Mesolithic IVC -0.219
- gendstat: England_Mesolithic WSHG 0.571
- gendstat: England_Mesolithic Tarim_EMBA1 -0.003
- gendstat: England_Mesolithic Israel_Natufian_published -0.805
- gendstat: England_Mesolithic Spain_ElMiron 0.702
- gendstat: England_Mesolithic Mongolia_North_N 1.947
- gendstat: Morocco_Iberomaurusian IVC -0.801
- gendstat: Morocco_Iberomaurusian WSHG 0.190
- gendstat: Morocco_Iberomaurusian Tarim_EMBA1 -0.474
- gendstat: Morocco_Iberomaurusian Israel_Natufian_published -1.282
- gendstat: Morocco_Iberomaurusian Spain_ElMiron 0.352
- gendstat: Morocco_Iberomaurusian Mongolia_North_N 1.952
- gendstat: IVC WSHG 1.071
- gendstat: IVC Tarim_EMBA1 0.296
- gendstat: IVC Israel_Natufian_published -0.750
- gendstat: IVC Spain_ElMiron 0.973
- gendstat: IVC Mongolia_North_N 3.300
- gendstat: WSHG Tarim_EMBA1 -0.808
- gendstat: WSHG Israel_Natufian_published -1.360
- gendstat: WSHG Spain_ElMiron 0.202
- gendstat: WSHG Mongolia_North_N 1.687
- gendstat: Tarim_EMBA1 Israel_Natufian_published -0.879
- gendstat: Tarim_EMBA1 Spain_ElMiron 0.753
- gendstat: Tarim_EMBA1 Mongolia_North_N 2.605
- gendstat: Israel_Natufian_published Spain_ElMiron 1.334
- gendstat: Israel_Natufian_published Mongolia_North_N 2.492
- gendstat: Spain_ElMiron Mongolia_North_N 1.096
- removing /tmp/fsx.13117
- ##end of qpAdm: 1.432 seconds cpu 0.705 Mbytes in use
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