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  1. Jul-25 17:55:21.875 [main] DEBUG nextflow.cli.Launcher - $> /home/sv49w/usr/local/bin/nextflow run distiller.nf -params-file project.yml -profile cluster
  2. Jul-25 17:55:22.751 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.24.4
  3. Jul-25 17:55:22.902 [main] INFO nextflow.cli.CmdRun - Launching `distiller.nf` [pedantic_chandrasekhar] - revision: d98d4de371
  4. Jul-25 17:55:23.023 [main] DEBUG nextflow.config.ConfigBuilder - Found config local: nextflow.config
  5. Jul-25 17:55:23.052 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/nextflow.config
  6. Jul-25 17:55:25.661 [main] DEBUG nextflow.config.ConfigBuilder - Setting config profile: 'cluster'
  7. Jul-25 17:55:28.706 [main] DEBUG nextflow.Session - Session uuid: 2dee80cc-c90a-41a0-893b-d7ce5168be74
  8. Jul-25 17:55:28.718 [main] DEBUG nextflow.Session - Run name: pedantic_chandrasekhar
  9. Jul-25 17:55:28.732 [main] DEBUG nextflow.Session - Executor pool size: 64
  10. Jul-25 17:55:28.850 [main] DEBUG nextflow.cli.CmdRun -
  11. Version: 0.24.4 build 4341
  12. Modified: 22-05-2017 11:18 UTC (07:18 EDT)
  13. System: Linux 2.6.32-642.4.2.el6.x86_64
  14. Runtime: Groovy 2.4.10 on OpenJDK 64-Bit Server VM 1.8.0_121-b15
  15. Encoding: UTF-8 (UTF-8)
  16. Process: 65370@c02b08 [10.192.17.24]
  17. CPUs: 64 - Mem: 504.9 GB (305.7 GB) - Swap: 0 (0)
  18. Jul-25 17:55:29.018 [main] DEBUG nextflow.Session - Work-dir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work [nfs]
  19. Jul-25 17:55:29.019 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/bin
  20. Jul-25 17:55:29.266 [main] DEBUG nextflow.Session - Session start invoked
  21. Jul-25 17:55:29.271 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start
  22. Jul-25 17:55:29.272 [main] DEBUG nextflow.trace.TraceFileObserver - Flow starting -- trace file: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/trace.txt
  23. Jul-25 17:55:29.282 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing
  24. Jul-25 17:55:38.224 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
  25. Jul-25 17:55:41.296 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  26. Jul-25 17:55:41.323 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  27. Jul-25 17:55:41.527 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  28. Jul-25 17:55:41.530 [main] INFO nextflow.executor.Executor - [warm up] executor > lsf
  29. Jul-25 17:55:41.652 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'lsf' > capacity: 100; pollInterval: 5s; dumpInterval: 5m
  30. Jul-25 17:55:41.736 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: TaskPollingMonitor
  31. Jul-25 17:55:41.736 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: lsf)
  32. Jul-25 17:55:41.804 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: lsf
  33. Jul-25 17:55:41.805 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  34. Jul-25 17:55:42.383 [main] DEBUG nextflow.Session - >>> barrier register (process: download_sra)
  35. Jul-25 17:55:42.535 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > download_sra -- maxForks: 64
  36. Jul-25 17:55:42.839 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <download_sra> Poison pill arrived
  37. Jul-25 17:55:42.847 [Actor Thread 1] DEBUG nextflow.processor.StateObj - <download_sra> State before poison: StateObj[submitted: 0; completed: 0; poisoned: false ]
  38. Jul-25 17:55:42.848 [Actor Thread 1] DEBUG nextflow.processor.TaskProcessor - <download_sra> Sending poison pills and terminating process
  39. Jul-25 17:55:42.849 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <download_sra> After stop
  40. Jul-25 17:55:42.866 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: download_sra)
  41. Jul-25 17:55:43.741 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  42. Jul-25 17:55:43.742 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  43. Jul-25 17:55:43.744 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  44. Jul-25 17:55:43.745 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  45. Jul-25 17:55:43.802 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc)
  46. Jul-25 17:55:43.936 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc -- maxForks: 64
  47. Jul-25 17:55:43.940 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <fastqc> Poison pill arrived
  48. Jul-25 17:55:43.940 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <fastqc> After stop
  49. Jul-25 17:55:43.940 [Actor Thread 1] DEBUG nextflow.processor.StateObj - <fastqc> State before poison: StateObj[submitted: 0; completed: 0; poisoned: false ]
  50. Jul-25 17:55:43.942 [Actor Thread 1] DEBUG nextflow.processor.TaskProcessor - <fastqc> Sending poison pills and terminating process
  51. Jul-25 17:55:43.942 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc)
  52. Jul-25 17:55:44.115 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  53. Jul-25 17:55:44.115 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  54. Jul-25 17:55:44.115 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  55. Jul-25 17:55:44.116 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  56. Jul-25 17:55:44.117 [main] DEBUG nextflow.Session - >>> barrier register (process: chunk_fastqs)
  57. Jul-25 17:55:44.270 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > chunk_fastqs -- maxForks: 64
  58. Jul-25 17:55:44.525 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <chunk_fastqs> Poison pill arrived
  59. Jul-25 17:55:44.885 [Actor Thread 1] DEBUG nextflow.processor.StateObj - <chunk_fastqs> State before poison: StateObj[submitted: 5; completed: 0; poisoned: false ]
  60. Jul-25 17:55:45.417 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  61. Jul-25 17:55:45.418 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  62. Jul-25 17:55:45.418 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  63. Jul-25 17:55:45.418 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  64. Jul-25 17:55:45.420 [main] DEBUG nextflow.Session - >>> barrier register (process: map_runs)
  65. Jul-25 17:55:45.586 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > map_runs -- maxForks: 64
  66. Jul-25 17:55:45.752 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  67. Jul-25 17:55:45.752 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  68. Jul-25 17:55:45.753 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  69. Jul-25 17:55:45.769 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  70. Jul-25 17:55:45.777 [main] DEBUG nextflow.Session - >>> barrier register (process: parse_runs)
  71. Jul-25 17:55:45.847 [Actor Thread 6] DEBUG nextflow.executor.GridTaskHandler - Launching process > chunk_fastqs (library:HeLa1 run:lane4) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28
  72. Jul-25 17:55:45.900 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > parse_runs -- maxForks: 64
  73. Jul-25 17:55:46.450 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  74. Jul-25 17:55:46.465 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  75. Jul-25 17:55:46.466 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  76. Jul-25 17:55:46.484 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  77. Jul-25 17:55:46.486 [main] DEBUG nextflow.Session - >>> barrier register (process: premerge_pairsam_chunks)
  78. Jul-25 17:55:46.553 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > premerge_pairsam_chunks -- maxForks: 64
  79. Jul-25 17:55:46.758 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  80. Jul-25 17:55:46.758 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  81. Jul-25 17:55:46.758 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  82. Jul-25 17:55:46.759 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  83. Jul-25 17:55:46.760 [main] DEBUG nextflow.Session - >>> barrier register (process: merge_pairsam_into_runs)
  84. Jul-25 17:55:46.835 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > merge_pairsam_into_runs -- maxForks: 64
  85. Jul-25 17:55:46.949 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  86. Jul-25 17:55:46.949 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  87. Jul-25 17:55:46.950 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  88. Jul-25 17:55:46.985 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  89. Jul-25 17:55:46.986 [main] DEBUG nextflow.Session - >>> barrier register (process: merge_runs_into_libraries)
  90. Jul-25 17:55:47.031 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > merge_runs_into_libraries -- maxForks: 64
  91. Jul-25 17:55:47.102 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  92. Jul-25 17:55:47.102 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  93. Jul-25 17:55:47.102 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  94. Jul-25 17:55:47.131 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  95. Jul-25 17:55:47.133 [main] DEBUG nextflow.Session - >>> barrier register (process: merge_stats_runs_into_libraries)
  96. Jul-25 17:55:47.140 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > merge_stats_runs_into_libraries -- maxForks: 64
  97. Jul-25 17:55:47.197 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  98. Jul-25 17:55:47.197 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  99. Jul-25 17:55:47.198 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  100. Jul-25 17:55:47.201 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  101. Jul-25 17:55:47.204 [main] DEBUG nextflow.Session - >>> barrier register (process: filter_make_pairs)
  102. Jul-25 17:55:47.253 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > filter_make_pairs -- maxForks: 64
  103. Jul-25 17:55:47.292 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  104. Jul-25 17:55:47.313 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  105. Jul-25 17:55:47.313 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  106. Jul-25 17:55:47.319 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  107. Jul-25 17:55:47.321 [main] DEBUG nextflow.Session - >>> barrier register (process: index_pairs)
  108. Jul-25 17:55:47.349 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > index_pairs -- maxForks: 64
  109. Jul-25 17:55:47.404 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  110. Jul-25 17:55:47.405 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  111. Jul-25 17:55:47.405 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  112. Jul-25 17:55:47.405 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  113. Jul-25 17:55:47.406 [main] DEBUG nextflow.Session - >>> barrier register (process: bin_library_pairs)
  114. Jul-25 17:55:47.408 [main] DEBUG nextflow.processor.TaskProcessor - Creating *combiner* operator for each param(s) at index(es): [1]
  115. Jul-25 17:55:47.440 [Actor Thread 7] DEBUG nextflow.executor.GridTaskHandler - Launching process > chunk_fastqs (library:HeLa1 run:lane5) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/51/2b90f9d96016e1475b556ff9a19875
  116. Jul-25 17:55:47.448 [Actor Thread 6] INFO nextflow.Session - [d2/6a5419] Submitted process > chunk_fastqs (library:HeLa1 run:lane4)
  117. Jul-25 17:55:47.614 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bin_library_pairs -- maxForks: 64
  118. Jul-25 17:55:47.712 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  119. Jul-25 17:55:47.712 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  120. Jul-25 17:55:47.712 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  121. Jul-25 17:55:47.713 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  122. Jul-25 17:55:47.715 [main] DEBUG nextflow.Session - >>> barrier register (process: make_library_group_coolers)
  123. Jul-25 17:55:47.770 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > make_library_group_coolers -- maxForks: 64
  124. Jul-25 17:55:47.840 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: lsf
  125. Jul-25 17:55:47.841 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'lsf'
  126. Jul-25 17:55:47.841 [main] DEBUG nextflow.executor.Executor - Initializing executor: lsf
  127. Jul-25 17:55:47.841 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'lsf' > queue-stat-interval: 1m
  128. Jul-25 17:55:47.842 [main] DEBUG nextflow.Session - >>> barrier register (process: merge_stats_libraries_into_groups)
  129. Jul-25 17:55:47.864 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > merge_stats_libraries_into_groups -- maxForks: 64
  130. Jul-25 17:55:47.876 [Actor Thread 7] INFO nextflow.Session - [51/2b90f9] Submitted process > chunk_fastqs (library:HeLa1 run:lane5)
  131. Jul-25 17:55:47.878 [Actor Thread 5] DEBUG nextflow.executor.GridTaskHandler - Launching process > chunk_fastqs (library:HeLa1 run:lane3) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/66/4d3dea63d7b78017b0eba9d4acf4f1
  132. Jul-25 17:55:47.927 [main] DEBUG nextflow.script.ScriptRunner - > Await termination
  133. Jul-25 17:55:47.927 [main] DEBUG nextflow.Session - Session await
  134. Jul-25 17:55:48.168 [Actor Thread 5] INFO nextflow.Session - [66/4d3dea] Submitted process > chunk_fastqs (library:HeLa1 run:lane3)
  135. Jul-25 17:55:48.171 [Actor Thread 3] DEBUG nextflow.executor.GridTaskHandler - Launching process > chunk_fastqs (library:HeLa1 run:lane1) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/50/8bba755e8a28f6d1532bc849adc8fa
  136. Jul-25 17:55:48.404 [Actor Thread 3] INFO nextflow.Session - [50/8bba75] Submitted process > chunk_fastqs (library:HeLa1 run:lane1)
  137. Jul-25 17:55:48.406 [Actor Thread 4] DEBUG nextflow.executor.GridTaskHandler - Launching process > chunk_fastqs (library:HeLa1 run:lane2) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/44/d98b8a85228e0d3606ea51ade4d3c8
  138. Jul-25 17:55:48.706 [Actor Thread 4] INFO nextflow.Session - [44/d98b8a] Submitted process > chunk_fastqs (library:HeLa1 run:lane2)
  139. Jul-25 17:55:48.713 [Actor Thread 2] DEBUG nextflow.processor.TaskProcessor - <chunk_fastqs> After stop
  140. Jul-25 18:00:46.947 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: SUBMITTED; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: -; exited: -; ]
  141. Jul-25 18:05:46.977 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: SUBMITTED; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: -; exited: -; ]
  142. Jul-25 18:10:46.996 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  143. Jul-25 18:15:47.009 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  144. Jul-25 18:20:47.025 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  145. Jul-25 18:25:47.041 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  146. Jul-25 18:30:47.062 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  147. Jul-25 18:35:47.074 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  148. Jul-25 18:40:47.082 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  149. Jul-25 18:45:47.094 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  150. Jul-25 18:50:47.104 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  151. Jul-25 18:55:47.113 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  152. Jul-25 19:00:47.123 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  153. Jul-25 19:03:38.242 [Actor Thread 12] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:00) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085
  154. Jul-25 19:03:38.794 [Actor Thread 12] INFO nextflow.Session - [e1/a68673] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:00)
  155. Jul-25 19:03:38.794 [Actor Thread 2] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:02) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e4/8c366721f9cd51f9cfd25bd04dd37f
  156. Jul-25 19:03:39.234 [Actor Thread 2] INFO nextflow.Session - [e4/8c3667] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:02)
  157. Jul-25 19:03:39.240 [Actor Thread 13] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:01) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/cb/c6e1cd734da05ccd215106ee3c13c5
  158. Jul-25 19:03:39.600 [Actor Thread 13] INFO nextflow.Session - [cb/c6e1cd] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:01)
  159. Jul-25 19:03:39.602 [Actor Thread 15] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:03) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d0/040e87219ea1dc6825f73dfc17c27c
  160. Jul-25 19:03:40.106 [Actor Thread 15] INFO nextflow.Session - [d0/040e87] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:03)
  161. Jul-25 19:03:40.107 [Actor Thread 17] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:05) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f3/9584372390d37dbfe92e37f2a39662
  162. Jul-25 19:03:40.406 [Actor Thread 17] INFO nextflow.Session - [f3/958437] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:05)
  163. Jul-25 19:03:40.407 [Actor Thread 16] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:04) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/05/d7d1019392c2e0a8aa07c07c14dd9c
  164. Jul-25 19:03:40.706 [Actor Thread 16] INFO nextflow.Session - [05/d7d101] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:04)
  165. Jul-25 19:03:40.708 [Actor Thread 18] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:06) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/3c/57f1473f13b9872509282a23cc6bf2
  166. Jul-25 19:03:40.879 [Actor Thread 18] INFO nextflow.Session - [3c/57f147] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:06)
  167. Jul-25 19:03:40.882 [Actor Thread 19] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:07) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/4e/30313c6bb8ce5544bab88059cd5d1b
  168. Jul-25 19:03:40.985 [Actor Thread 19] INFO nextflow.Session - [4e/30313c] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:07)
  169. Jul-25 19:03:40.987 [Actor Thread 20] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:08) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c0/745c2f0193d0113907c0b9230fefc4
  170. Jul-25 19:03:41.094 [Actor Thread 20] INFO nextflow.Session - [c0/745c2f] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:08)
  171. Jul-25 19:03:41.095 [Actor Thread 21] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:09) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/4e/af7cdede6c43f7130812386137c374
  172. Jul-25 19:03:41.237 [Actor Thread 21] INFO nextflow.Session - [4e/af7cde] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:09)
  173. Jul-25 19:03:41.239 [Actor Thread 22] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:10) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/60/a4cd1089e4b4af658b433337ae2129
  174. Jul-25 19:03:41.361 [Actor Thread 22] INFO nextflow.Session - [60/a4cd10] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:10)
  175. Jul-25 19:03:41.363 [Actor Thread 24] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:12) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/db/481387591af78b3aa589237b09b0bb
  176. Jul-25 19:03:41.505 [Actor Thread 24] INFO nextflow.Session - [db/481387] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:12)
  177. Jul-25 19:03:41.506 [Actor Thread 23] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane3 chunk:11) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/32/203e8b0735861b5b50a35043251cf7
  178. Jul-25 19:03:41.624 [Actor Thread 23] INFO nextflow.Session - [32/203e8b] Submitted process > map_runs (library:HeLa1 run:lane3 chunk:11)
  179. Jul-25 19:03:57.327 [Actor Thread 26] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:00) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bd/01340039eec33f71d77d463627b045
  180. Jul-25 19:03:57.967 [Actor Thread 26] INFO nextflow.Session - [bd/013400] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:00)
  181. Jul-25 19:03:57.968 [Actor Thread 28] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:01) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c5/13517e1e54733a785aec7f3725e62a
  182. Jul-25 19:03:58.334 [Actor Thread 28] INFO nextflow.Session - [c5/13517e] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:01)
  183. Jul-25 19:03:58.336 [Actor Thread 27] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:02) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d3/729d4664a7b8f0589031d858f15cb8
  184. Jul-25 19:03:58.744 [Actor Thread 27] INFO nextflow.Session - [d3/729d46] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:02)
  185. Jul-25 19:03:58.745 [Actor Thread 33] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:06) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/5b/c0ba5bb22e726ccef9f055a7854982
  186. Jul-25 19:03:59.454 [Actor Thread 33] INFO nextflow.Session - [5b/c0ba5b] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:06)
  187. Jul-25 19:03:59.456 [Actor Thread 34] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:07) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b4/69b4d031fd693060de92a13d4c7ad6
  188. Jul-25 19:03:59.603 [Actor Thread 34] INFO nextflow.Session - [b4/69b4d0] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:07)
  189. Jul-25 19:03:59.605 [Actor Thread 36] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:09) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/85/8942e05415f395082da7fda5e01179
  190. Jul-25 19:03:59.749 [Actor Thread 36] INFO nextflow.Session - [85/8942e0] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:09)
  191. Jul-25 19:03:59.750 [Actor Thread 38] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:11) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d8/3853c57836f3d9ab2560eeffbd8913
  192. Jul-25 19:03:59.936 [Actor Thread 38] INFO nextflow.Session - [d8/3853c5] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:11)
  193. Jul-25 19:03:59.937 [Actor Thread 29] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:04) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/8d/074314faac61a2d96d9dfaf520a608
  194. Jul-25 19:04:00.052 [Actor Thread 29] INFO nextflow.Session - [8d/074314] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:04)
  195. Jul-25 19:04:00.053 [Actor Thread 30] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:03) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/fe/06af8fb7b2a4314252ff58090bf1bc
  196. Jul-25 19:04:00.187 [Actor Thread 30] INFO nextflow.Session - [fe/06af8f] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:03)
  197. Jul-25 19:04:00.188 [Actor Thread 31] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:05) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/23/7de5a144bb77d0b75818b9949d9cc4
  198. Jul-25 19:04:00.299 [Actor Thread 31] INFO nextflow.Session - [23/7de5a1] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:05)
  199. Jul-25 19:04:00.301 [Actor Thread 35] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:08) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/17/a3728d7ec584a07a28e541747eb446
  200. Jul-25 19:04:00.418 [Actor Thread 35] INFO nextflow.Session - [17/a3728d] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:08)
  201. Jul-25 19:04:00.420 [Actor Thread 37] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:10) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/13/2da38ca0a95e3ddbd25d3163fdd8f2
  202. Jul-25 19:04:00.593 [Actor Thread 37] INFO nextflow.Session - [13/2da38c] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:10)
  203. Jul-25 19:04:00.594 [Actor Thread 39] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane2 chunk:12) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/43/36c018338251afaa9d1ea73ff1c784
  204. Jul-25 19:04:00.765 [Actor Thread 39] INFO nextflow.Session - [43/36c018] Submitted process > map_runs (library:HeLa1 run:lane2 chunk:12)
  205. Jul-25 19:05:47.130 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 29 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  206. Jul-25 19:10:47.144 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 29 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  207. Jul-25 19:15:47.160 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 29 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: -; ]
  208. Jul-25 19:20:47.180 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 29 -- first: TaskHandler[jobId: 4680616; id: 4; name: chunk_fastqs (library:HeLa1 run:lane4); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d2/6a54191ebe81ebed5f1ab3b2c90c28 started: 1501020541996; exited: 2017-07-25T23:20:42.352535Z; ]
  209. Jul-25 19:20:47.449 [Actor Thread 40] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:00) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/3c/26ac0563ff0ec2ced637b2e68b8aed
  210. Jul-25 19:20:47.891 [Actor Thread 40] INFO nextflow.Session - [3c/26ac05] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:00)
  211. Jul-25 19:20:47.891 [Actor Thread 42] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:01) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9c/a5c9b6f0625d299e3d12f7bba1df0c
  212. Jul-25 19:20:48.187 [Actor Thread 42] INFO nextflow.Session - [9c/a5c9b6] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:01)
  213. Jul-25 19:20:48.188 [Actor Thread 41] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:02) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/14/f48948216e410c5b5418569ed253a8
  214. Jul-25 19:20:48.782 [Actor Thread 41] INFO nextflow.Session - [14/f48948] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:02)
  215. Jul-25 19:20:48.783 [Actor Thread 51] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:10) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ee/0d6d4c2ea5a7fe7c7f227c94c1d9c6
  216. Jul-25 19:20:48.950 [Actor Thread 51] INFO nextflow.Session - [ee/0d6d4c] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:10)
  217. Jul-25 19:20:48.950 [Actor Thread 43] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:04) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba
  218. Jul-25 19:20:49.043 [Actor Thread 43] INFO nextflow.Session - [49/67db5a] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:04)
  219. Jul-25 19:20:49.044 [Actor Thread 53] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:12) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b9/000d18afc57478776178cd12178c1e
  220. Jul-25 19:20:49.165 [Actor Thread 53] INFO nextflow.Session - [b9/000d18] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:12)
  221. Jul-25 19:20:49.166 [Actor Thread 44] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:03) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/a4/99442f708969f3bcbb7143763dfad0
  222. Jul-25 19:20:49.314 [Actor Thread 44] INFO nextflow.Session - [a4/99442f] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:03)
  223. Jul-25 19:20:49.315 [Actor Thread 45] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:05) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/0a/75d27781f261bae0cb91bdc724faf9
  224. Jul-25 19:20:49.432 [Actor Thread 45] INFO nextflow.Session - [0a/75d277] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:05)
  225. Jul-25 19:20:49.433 [Actor Thread 46] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:06) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/01/d07f19583bfd45c12cb1195c095538
  226. Jul-25 19:20:49.576 [Actor Thread 46] INFO nextflow.Session - [01/d07f19] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:06)
  227. Jul-25 19:20:49.578 [Actor Thread 47] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:07) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/87/d1ecfb08341896a299c3e4a37cf755
  228. Jul-25 19:20:49.752 [Actor Thread 47] INFO nextflow.Session - [87/d1ecfb] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:07)
  229. Jul-25 19:20:49.752 [Actor Thread 48] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:08) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/5f/fe7a506cb6a816bc430b1a7b7887f9
  230. Jul-25 19:20:49.854 [Actor Thread 48] INFO nextflow.Session - [5f/fe7a50] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:08)
  231. Jul-25 19:20:49.856 [Actor Thread 50] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:09) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/08/8924f5feaedb7312bd361df50e1c56
  232. Jul-25 19:20:49.955 [Actor Thread 50] INFO nextflow.Session - [08/8924f5] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:09)
  233. Jul-25 19:20:49.956 [Actor Thread 52] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:11) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ad/4613a9c8b2ffc5d62f981eb0eba63d
  234. Jul-25 19:20:50.513 [Actor Thread 52] INFO nextflow.Session - [ad/4613a9] Submitted process > map_runs (library:HeLa1 run:lane4 chunk:11)
  235. Jul-25 19:21:07.385 [Actor Thread 54] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:00) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c3/c0f9edc113a5cdcb4c7594f2ad1110
  236. Jul-25 19:21:07.601 [Actor Thread 54] INFO nextflow.Session - [c3/c0f9ed] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:00)
  237. Jul-25 19:21:07.601 [Actor Thread 56] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:01) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d6/3e483c55e4a0ed055298417eade7eb
  238. Jul-25 19:21:07.811 [Actor Thread 56] INFO nextflow.Session - [d6/3e483c] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:01)
  239. Jul-25 19:21:07.812 [Actor Thread 55] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:02) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ad/101930936556fd4cf307922afddefe
  240. Jul-25 19:21:07.926 [Actor Thread 55] INFO nextflow.Session - [ad/101930] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:02)
  241. Jul-25 19:21:07.927 [Actor Thread 59] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:05) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/52/14e0b0d924c8b494dce119b1b87bdb
  242. Jul-25 19:21:08.056 [Actor Thread 59] INFO nextflow.Session - [52/14e0b0] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:05)
  243. Jul-25 19:21:08.057 [Actor Thread 60] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:06) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/57/29807becfa4d6b48a3197757338abc
  244. Jul-25 19:21:08.158 [Actor Thread 60] INFO nextflow.Session - [57/29807b] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:06)
  245. Jul-25 19:21:08.159 [Actor Thread 62] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:08) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e5/6157d765fd0be60099cafc595bf6ac
  246. Jul-25 19:21:08.273 [Actor Thread 62] INFO nextflow.Session - [e5/6157d7] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:08)
  247. Jul-25 19:21:08.274 [Actor Thread 57] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:04) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/6b/e004cb748c47b275844807ec11cb6a
  248. Jul-25 19:21:08.377 [Actor Thread 57] INFO nextflow.Session - [6b/e004cb] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:04)
  249. Jul-25 19:21:08.378 [Actor Thread 64] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:10) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ac/596cac338806b5a6da40b39ee4375f
  250. Jul-25 19:21:08.516 [Actor Thread 64] INFO nextflow.Session - [ac/596cac] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:10)
  251. Jul-25 19:21:08.519 [Actor Thread 58] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:03) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/0e/7e98cfed218d60a394cf1385d03917
  252. Jul-25 19:21:08.608 [Actor Thread 58] INFO nextflow.Session - [0e/7e98cf] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:03)
  253. Jul-25 19:21:08.609 [Actor Thread 61] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:07) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/a1/61afcb486bb4d7dfc3735dd6e0c86e
  254. Jul-25 19:21:08.740 [Actor Thread 61] INFO nextflow.Session - [a1/61afcb] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:07)
  255. Jul-25 19:21:08.741 [Actor Thread 63] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:09) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9d/6e9e12dde258e79aeb4df40ad3d7de
  256. Jul-25 19:21:08.939 [Actor Thread 63] INFO nextflow.Session - [9d/6e9e12] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:09)
  257. Jul-25 19:21:08.940 [Actor Thread 65] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:11) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e9/1149ccb203d568e6af65fe8e9d9b5a
  258. Jul-25 19:21:09.055 [Actor Thread 65] INFO nextflow.Session - [e9/1149cc] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:11)
  259. Jul-25 19:21:09.056 [Actor Thread 67] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane1 chunk:12) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/af/fd8b7e4a63a604555bd78f0eb7b3ae
  260. Jul-25 19:21:09.622 [Actor Thread 67] INFO nextflow.Session - [af/fd8b7e] Submitted process > map_runs (library:HeLa1 run:lane1 chunk:12)
  261. Jul-25 19:21:32.346 [Actor Thread 68] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:00) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9e/8c5196c8292c3273debcde9cb6cec0
  262. Jul-25 19:21:32.415 [Actor Thread 66] DEBUG nextflow.processor.TaskProcessor - <chunk_fastqs> Sending poison pills and terminating process
  263. Jul-25 19:21:32.510 [Actor Thread 66] DEBUG nextflow.Session - <<< barrier arrive (process: chunk_fastqs)
  264. Jul-25 19:21:32.597 [Actor Thread 67] DEBUG nextflow.processor.TaskProcessor - <map_runs> Poison pill arrived
  265. Jul-25 19:21:32.597 [Actor Thread 66] DEBUG nextflow.processor.StateObj - <map_runs> State before poison: StateObj[submitted: 65; completed: 0; poisoned: false ]
  266. Jul-25 19:21:32.765 [Actor Thread 68] INFO nextflow.Session - [9e/8c5196] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:00)
  267. Jul-25 19:21:32.766 [Actor Thread 70] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:01) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/e0008679b7db4bb2f1412fa2557ae3
  268. Jul-25 19:21:32.899 [Actor Thread 70] INFO nextflow.Session - [f4/e00086] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:01)
  269. Jul-25 19:21:32.900 [Actor Thread 69] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:02) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/78/88af6324c6be418c7822f8b7c86e68
  270. Jul-25 19:21:33.060 [Actor Thread 69] INFO nextflow.Session - [78/88af63] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:02)
  271. Jul-25 19:21:33.061 [Actor Thread 74] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:06) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/0d/66989aae1621c269e986479c7d791c
  272. Jul-25 19:21:33.175 [Actor Thread 74] INFO nextflow.Session - [0d/66989a] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:06)
  273. Jul-25 19:21:33.176 [Actor Thread 79] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:08) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f2/a89dc27e5023777dd2725e67dd6129
  274. Jul-25 19:21:33.301 [Actor Thread 79] INFO nextflow.Session - [f2/a89dc2] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:08)
  275. Jul-25 19:21:33.303 [Actor Thread 81] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:10) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/8b/e3edbe8dc72d205a041b882e053c0f
  276. Jul-25 19:21:33.843 [Actor Thread 81] INFO nextflow.Session - [8b/e3edbe] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:10)
  277. Jul-25 19:21:33.845 [Actor Thread 71] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:04) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/dd/f1e9a7c53477cc8fca2fbb3d8778c1
  278. Jul-25 19:21:34.018 [Actor Thread 71] INFO nextflow.Session - [dd/f1e9a7] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:04)
  279. Jul-25 19:21:34.020 [Actor Thread 82] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:11) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/85/b029a863b50088eeaf47b0072070ad
  280. Jul-25 19:21:34.817 [Actor Thread 82] INFO nextflow.Session - [85/b029a8] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:11)
  281. Jul-25 19:21:34.818 [Actor Thread 72] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:03) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/24/8f68bbcf987adb6b8010fa0313b826
  282. Jul-25 19:21:34.917 [Actor Thread 72] INFO nextflow.Session - [24/8f68bb] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:03)
  283. Jul-25 19:21:34.918 [Actor Thread 73] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:05) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/77/d4c61167e1242d2734d7e584eb0065
  284. Jul-25 19:21:35.405 [Actor Thread 73] INFO nextflow.Session - [77/d4c611] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:05)
  285. Jul-25 19:21:35.406 [Actor Thread 75] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:07) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/63/14b79264b40b0be03f9627700bc7d9
  286. Jul-25 19:21:35.791 [Actor Thread 75] INFO nextflow.Session - [63/14b792] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:07)
  287. Jul-25 19:21:35.791 [Actor Thread 80] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:09) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/68/64cc37a83c4cfb55d85a9d3e1e07e2
  288. Jul-25 19:21:35.931 [Actor Thread 80] INFO nextflow.Session - [68/64cc37] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:09)
  289. Jul-25 19:21:35.933 [Actor Thread 83] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane5 chunk:12) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/7a/208cc8e3fe160b0d8557dfc695dccf
  290. Jul-25 19:21:36.050 [Actor Thread 83] INFO nextflow.Session - [7a/208cc8] Submitted process > map_runs (library:HeLa1 run:lane5 chunk:12)
  291. Jul-25 19:21:36.051 [Actor Thread 67] DEBUG nextflow.processor.TaskProcessor - <map_runs> After stop
  292. Jul-25 19:25:47.192 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  293. Jul-25 19:30:47.204 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  294. Jul-25 19:35:47.214 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  295. Jul-25 19:40:47.224 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  296. Jul-25 19:45:47.234 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  297. Jul-25 19:50:47.242 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  298. Jul-25 19:55:03.024 [Actor Thread 87] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:07 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ca/e9c278ebccc9a72a2f57c7003bbd2c
  299. Jul-25 19:55:03.219 [Actor Thread 87] INFO nextflow.Session - [ca/e9c278] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:07 parsing)
  300. Jul-25 19:55:47.250 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  301. Jul-25 19:56:07.302 [Actor Thread 89] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:05 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/48/79593ca13bec92111a814066fff99f
  302. Jul-25 19:56:07.468 [Actor Thread 89] INFO nextflow.Session - [48/79593c] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:05 parsing)
  303. Jul-25 19:58:42.280 [Actor Thread 91] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:02 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/eb/b0877309a32ca215a9538cce8784bd
  304. Jul-25 19:58:42.451 [Actor Thread 91] INFO nextflow.Session - [eb/b08773] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:02 parsing)
  305. Jul-25 20:00:17.311 [Actor Thread 93] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:01 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/17/afc17727ac5493a6361d6bd6781e1b
  306. Jul-25 20:00:17.453 [Actor Thread 93] INFO nextflow.Session - [17/afc177] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:01 parsing)
  307. Jul-25 20:00:47.263 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681747; id: 6; name: map_runs (library:HeLa1 run:lane3 chunk:00); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e1/a68673c1ee9fe9b05d59a0c85ab085 started: 1501023822130; exited: -; ]
  308. Jul-25 20:02:47.302 [Actor Thread 95] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:00 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f2/a629bc6a2f0911edbb8c2123fadada
  309. Jul-25 20:02:47.430 [Actor Thread 95] INFO nextflow.Session - [f2/a629bc] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:00 parsing)
  310. Jul-25 20:05:47.274 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681750; id: 9; name: map_runs (library:HeLa1 run:lane3 chunk:03); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d0/040e87219ea1dc6825f73dfc17c27c started: 1501023832133; exited: -; ]
  311. Jul-25 20:10:47.285 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681750; id: 9; name: map_runs (library:HeLa1 run:lane3 chunk:03); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d0/040e87219ea1dc6825f73dfc17c27c started: 1501023832133; exited: -; ]
  312. Jul-25 20:11:22.338 [Actor Thread 97] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:11 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ba/12ea9e85b1b7d8d14ddd7f41e60a89
  313. Jul-25 20:11:22.758 [Actor Thread 97] INFO nextflow.Session - [ba/12ea9e] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:11 parsing)
  314. Jul-25 20:12:12.317 [Actor Thread 99] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:07 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/5d/bf94a94c1e8807ecc3f5550022a9dc
  315. Jul-25 20:12:12.707 [Actor Thread 99] INFO nextflow.Session - [5d/bf94a9] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:07 parsing)
  316. Jul-25 20:12:32.391 [Actor Thread 101] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:11 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/0e/c7663f60dc23b35ab56d751953fa18
  317. Jul-25 20:12:32.603 [Actor Thread 101] INFO nextflow.Session - [0e/c7663f] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:11 parsing)
  318. Jul-25 20:13:52.524 [Actor Thread 103] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:09 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/81/0710ee74064f65148b1b05628ba672
  319. Jul-25 20:13:52.659 [Actor Thread 103] INFO nextflow.Session - [81/0710ee] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:09 parsing)
  320. Jul-25 20:15:47.293 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681750; id: 9; name: map_runs (library:HeLa1 run:lane3 chunk:03); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d0/040e87219ea1dc6825f73dfc17c27c started: 1501023832133; exited: -; ]
  321. Jul-25 20:15:57.307 [Thread-1] DEBUG nextflow.file.FileHelper - NFS path (true): /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work
  322. Jul-25 20:17:12.319 [Actor Thread 105] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:06 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9e/ad1804e8619d469e2531f9131da15a
  323. Jul-25 20:17:12.526 [Actor Thread 105] INFO nextflow.Session - [9e/ad1804] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:06 parsing)
  324. Jul-25 20:18:42.365 [Actor Thread 107] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:02 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/12/d67b7b1bfd3df67903346b3bb58c9e
  325. Jul-25 20:18:42.508 [Actor Thread 107] INFO nextflow.Session - [12/d67b7b] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:02 parsing)
  326. Jul-25 20:19:02.345 [Actor Thread 109] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:03 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bb/e3db36ef24de900af802cf5e1cf198
  327. Jul-25 20:19:02.649 [Actor Thread 109] INFO nextflow.Session - [bb/e3db36] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:03 parsing)
  328. Jul-25 20:20:12.355 [Actor Thread 111] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:05 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c2/2084d52e21fd26f4a481291456f8f6
  329. Jul-25 20:20:12.800 [Actor Thread 111] INFO nextflow.Session - [c2/2084d5] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:05 parsing)
  330. Jul-25 20:20:27.337 [Thread-1] DEBUG nextflow.executor.GridTaskHandler - Failed to get exist status for process TaskHandler[jobId: 4681790; id: 43; name: map_runs (library:HeLa1 run:lane4 chunk:11); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ad/4613a9c8b2ffc5d62f981eb0eba63d started: 1501027382285; exited: -; ] -- exitStatusReadTimeoutMillis: 270000; delta: 274873
  331. Current queue status:
  332. > job: 4681931: RUNNING
  333. > job: 4681767: RUNNING
  334. > job: 4681803: RUNNING
  335. > job: 4681907: RUNNING
  336. > job: 4681761: RUNNING
  337. > job: 4681804: RUNNING
  338. > job: 4681805: RUNNING
  339. > job: 4681784: RUNNING
  340. > job: 4681760: RUNNING
  341. > job: 4681763: RUNNING
  342. > job: 4681772: RUNNING
  343. > job: 4681933: RUNNING
  344. > job: 4681791: RUNNING
  345. > job: 4681781: RUNNING
  346. > job: 4681765: RUNNING
  347. > job: 4681928: RUNNING
  348. > job: 4681792: RUNNING
  349. > job: 4681910: RUNNING
  350. > job: 4681786: RUNNING
  351. > job: 4681789: RUNNING
  352. > job: 4681770: RUNNING
  353. > job: 4681758: RUNNING
  354. > job: 4681801: RUNNING
  355. > job: 4681795: RUNNING
  356. > job: 4681788: RUNNING
  357. > job: 4681769: RUNNING
  358. > job: 4681911: RUNNING
  359. > job: 4681799: RUNNING
  360. > job: 4681757: RUNNING
  361. > job: 4681782: RUNNING
  362. > job: 4681909: RUNNING
  363. > job: 4681929: RUNNING
  364. > job: 4681768: RUNNING
  365. > job: 4681778: RUNNING
  366. > job: 4681796: RUNNING
  367. > job: 4681779: RUNNING
  368. > job: 4681752: RUNNING
  369. > job: 4681771: RUNNING
  370. > job: 4681793: RUNNING
  371. > job: 4681794: RUNNING
  372. > job: 4681780: RUNNING
  373. > job: 4681802: RUNNING
  374. > job: 4681908: RUNNING
  375. > job: 4681800: RUNNING
  376. > job: 4681930: RUNNING
  377. > job: 4681785: RUNNING
  378. > job: 4681787: RUNNING
  379. > job: 4681755: RUNNING
  380. > job: 4681797: RUNNING
  381. > job: 4681798: RUNNING
  382. > job: 4681783: RUNNING
  383. > job: 4681790: ERROR
  384. > job: 4681806: PENDING
  385. > job: 4681807: PENDING
  386. > job: 4681808: PENDING
  387. > job: 4681809: PENDING
  388. > job: 4681810: PENDING
  389. > job: 4681811: PENDING
  390. > job: 4681812: PENDING
  391. > job: 4681813: PENDING
  392. > job: 4681814: PENDING
  393. > job: 4681815: PENDING
  394. > job: 4681816: PENDING
  395. > job: 4681934: PENDING
  396. > job: 4681935: PENDING
  397.  
  398. Content of workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ad/4613a9c8b2ffc5d62f981eb0eba63d
  399. > total 731
  400. > drwxrwxr-x 10 sv49w umw_job_dekker 648 Jul 25 17:55 .
  401. > drwxrwxr-x 6 sv49w umw_job_dekker 193 Jul 25 17:54 ..
  402. > drwxrwxr-x 2 sv49w umw_job_dekker 62 Jul 25 17:49 configs
  403. > drwxr-xr-x 2 sv49w umw_job_dekker 231 Jul 25 17:51 disaster_run_july24
  404. > -rw-rw-r-- 1 sv49w umw_job_dekker 20412 Jul 25 17:30 distiller.nf
  405. > drwxrwxr-x 2 sv49w umw_job_dekker 82 Jul 25 17:30 docker
  406. > -rw-rw-r-- 1 sv49w umw_job_dekker 493 Jul 25 17:30 environment.yml
  407. > drwxrwxr-x 8 sv49w umw_job_dekker 267 Jul 25 17:30 .git
  408. > -rw-rw-r-- 1 sv49w umw_job_dekker 31 Jul 25 17:30 .gitattributes
  409. > -rw-rw-r-- 1 sv49w umw_job_dekker 189 Jul 25 17:30 .gitignore
  410. > -rw-rw-r-- 1 sv49w umw_job_dekker 1065 Jul 25 17:30 LICENSE
  411. > drwxrwxr-x 3 sv49w umw_job_dekker 48 Jul 25 17:55 .nextflow
  412. > -rw-rw-r-- 1 sv49w umw_job_dekker 959 Jul 25 17:30 nextflow.config
  413. > -rw-rw-r-- 1 sv49w umw_job_dekker 57303 Jul 25 20:20 .nextflow.log
  414. > -rw-rw-r-- 1 sv49w umw_job_dekker 3277 Jul 25 17:31 project.yml
  415. > -rw-rw-r-- 1 sv49w umw_job_dekker 1335 Jul 25 17:30 README.md
  416. > drwxrwxr-x 4 sv49w umw_job_dekker 55 Jul 25 19:03 realdata
  417. > -rw-rw-r-- 1 sv49w umw_job_dekker 988 Jul 25 17:30 setup_test.sh
  418. > drwxrwxr-x 2 sv49w umw_job_dekker 253 Jul 25 17:30 sorted_chromsizes
  419. > -rw-rw-r-- 1 sv49w umw_job_dekker 2916 Jul 25 20:20 trace.txt
  420. > -rw-rw-r-- 1 sv49w umw_job_dekker 292 Jul 25 17:30 .travis.yml
  421. > -rw-rw-r-- 1 sv49w umw_job_dekker 16 Jul 25 17:30 VERSION
  422. > drwxrwxr-x 77 sv49w umw_job_dekker 1500 Jul 25 20:20 work
  423. > -rw-rw-r-- 1 sv49w umw_job_dekker 0 Jul 25 17:55 xxx.err
  424. > -rw-rw-r-- 1 sv49w umw_job_dekker 6546 Jul 25 20:20 xxx.out
  425.  
  426. Jul-25 20:20:27.382 [Thread-1] WARN nextflow.processor.TaskProcessor - Process `map_runs (library:HeLa1 run:lane4 chunk:11)` terminated for an unknown reason -- Likely it has been terminated by the external system -- Execution is retried (1)
  427. Jul-25 20:20:27.403 [pool-2-thread-1] DEBUG nextflow.executor.GridTaskHandler - Launching process > map_runs (library:HeLa1 run:lane4 chunk:11) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/85/ffb8146288eed1f037ad09234e45a4
  428. Jul-25 20:20:27.631 [pool-2-thread-1] INFO nextflow.Session - [85/ffb814] Re-submitted process > map_runs (library:HeLa1 run:lane4 chunk:11)
  429. Jul-25 20:20:47.311 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681752; id: 10; name: map_runs (library:HeLa1 run:lane3 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/05/d7d1019392c2e0a8aa07c07c14dd9c started: 1501023927136; exited: -; ]
  430. Jul-25 20:21:02.363 [Actor Thread 113] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:08 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/85/75c469ea3f32c70acb53908418493a
  431. Jul-25 20:21:02.622 [Actor Thread 113] INFO nextflow.Session - [85/75c469] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:08 parsing)
  432. Jul-25 20:22:12.338 [Actor Thread 115] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:00 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d3/eba9e7934508c20a997d758b648684
  433. Jul-25 20:22:12.614 [Actor Thread 115] INFO nextflow.Session - [d3/eba9e7] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:00 parsing)
  434. Jul-25 20:24:12.369 [Actor Thread 117] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:04 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9f/44166e43e87baf4db74de020ee05e4
  435. Jul-25 20:24:12.633 [Actor Thread 117] INFO nextflow.Session - [9f/44166e] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:04 parsing)
  436. Jul-25 20:24:47.360 [Actor Thread 119] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:00 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ff/3b71965f4bdd048f446226606670fb
  437. Jul-25 20:24:47.481 [Actor Thread 119] INFO nextflow.Session - [ff/3b7196] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:00 parsing)
  438. Jul-25 20:25:47.320 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681757; id: 16; name: map_runs (library:HeLa1 run:lane3 chunk:10); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/60/a4cd1089e4b4af658b433337ae2129 started: 1501024097151; exited: -; ]
  439. Jul-25 20:26:17.358 [Actor Thread 121] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:08 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ff/8a7d3576a2f4c457207f6b7981ef14
  440. Jul-25 20:26:17.694 [Actor Thread 121] INFO nextflow.Session - [ff/8a7d35] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:08 parsing)
  441. Jul-25 20:27:02.391 [Actor Thread 123] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:01 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/4f/93459d33e31f9a7ce13398fe8fdfcf
  442. Jul-25 20:27:02.893 [Actor Thread 123] INFO nextflow.Session - [4f/93459d] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:01 parsing)
  443. Jul-25 20:28:57.348 [Actor Thread 125] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:10 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c2/627d0eb33a67c701164e3d79ed479e
  444. Jul-25 20:28:57.552 [Actor Thread 125] INFO nextflow.Session - [c2/627d0e] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:10 parsing)
  445. Jul-25 20:30:47.331 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681757; id: 16; name: map_runs (library:HeLa1 run:lane3 chunk:10); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/60/a4cd1089e4b4af658b433337ae2129 started: 1501024097151; exited: -; ]
  446. Jul-25 20:31:17.352 [Actor Thread 127] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:10 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/17/fe597a5263af8bf37e220db7059e93
  447. Jul-25 20:31:17.866 [Actor Thread 127] INFO nextflow.Session - [17/fe597a] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:10 parsing)
  448. Jul-25 20:35:47.339 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681758; id: 18; name: map_runs (library:HeLa1 run:lane3 chunk:12); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/db/481387591af78b3aa589237b09b0bb started: 1501024117147; exited: -; ]
  449. Jul-25 20:37:12.381 [Actor Thread 129] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:10 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/66/b6a62d3be9177a3e06b1c4622e33c4
  450. Jul-25 20:37:12.499 [Actor Thread 129] INFO nextflow.Session - [66/b6a62d] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:10 parsing)
  451. Jul-25 20:37:57.372 [Actor Thread 131] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:05 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f3/0bc2f6aa2bab757037137bbd85003a
  452. Jul-25 20:37:57.473 [Actor Thread 131] INFO nextflow.Session - [f3/0bc2f6] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:05 parsing)
  453. Jul-25 20:39:07.432 [Actor Thread 133] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:03 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/46/c940da3a84c009e10e4cb6a42d5e48
  454. Jul-25 20:39:07.527 [Actor Thread 133] INFO nextflow.Session - [46/c940da] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:03 parsing)
  455. Jul-25 20:40:22.407 [Actor Thread 135] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:03 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/4f/f727d080d5443da76db42d1096c266
  456. Jul-25 20:40:22.625 [Actor Thread 135] INFO nextflow.Session - [4f/f727d0] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:03 parsing)
  457. Jul-25 20:40:47.365 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681758; id: 18; name: map_runs (library:HeLa1 run:lane3 chunk:12); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/db/481387591af78b3aa589237b09b0bb started: 1501024117147; exited: -; ]
  458. Jul-25 20:44:22.436 [Actor Thread 137] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:12 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ac/354316bce7c6f54df78aa113c9fe15
  459. Jul-25 20:44:22.607 [Actor Thread 137] INFO nextflow.Session - [ac/354316] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:12 parsing)
  460. Jul-25 20:45:47.380 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681758; id: 18; name: map_runs (library:HeLa1 run:lane3 chunk:12); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/db/481387591af78b3aa589237b09b0bb started: 1501024117147; exited: -; ]
  461. Jul-25 20:45:57.414 [Actor Thread 139] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:06 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/1e/061d0af5c2f7ad3e695535923a749d
  462. Jul-25 20:45:57.745 [Actor Thread 139] INFO nextflow.Session - [1e/061d0a] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:06 parsing)
  463. Jul-25 20:50:12.412 [Actor Thread 141] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:12 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/84/363a00d74ad1af75ef3df2a8ef6b13
  464. Jul-25 20:50:12.623 [Actor Thread 141] INFO nextflow.Session - [84/363a00] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:12 parsing)
  465. Jul-25 20:50:47.391 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 65 -- first: TaskHandler[jobId: 4681758; id: 18; name: map_runs (library:HeLa1 run:lane3 chunk:12); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/db/481387591af78b3aa589237b09b0bb started: 1501024117147; exited: -; ]
  466. Jul-25 20:51:37.417 [Actor Thread 142] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:07 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/e4/67c2313f42bd975161bb036b29427e
  467. Jul-25 20:51:37.659 [Actor Thread 142] INFO nextflow.Session - [e4/67c231] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:07 parsing)
  468. Jul-25 20:51:37.671 [Actor Thread 141] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:09 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/79/0f7010f5db9851ee7558188e82e703
  469. Jul-25 20:51:37.936 [Actor Thread 141] INFO nextflow.Session - [79/0f7010] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:09 parsing)
  470. Jul-25 20:52:12.457 [Actor Thread 144] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:04 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/6d/9fa7e9ae502c9bb3f518f00d890856
  471. Jul-25 20:52:12.728 [Actor Thread 144] INFO nextflow.Session - [6d/9fa7e9] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:04 parsing)
  472. Jul-25 20:53:52.416 [Actor Thread 146] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane3 chunk:12 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b9/4812c4bb1eed57e0da78d0dff6067c
  473. Jul-25 20:53:52.518 [Actor Thread 146] INFO nextflow.Session - [b9/4812c4] Submitted process > parse_runs (library:HeLa1 run:lane3 chunk:12 parsing)
  474. Jul-25 20:54:17.426 [Actor Thread 148] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:00 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/52/504f6bb27367ddcb701ef3451a30b8
  475. Jul-25 20:54:17.563 [Actor Thread 148] INFO nextflow.Session - [52/504f6b] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:00 parsing)
  476. Jul-25 20:55:47.399 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 64 -- first: TaskHandler[jobId: 4681761; id: 20; name: map_runs (library:HeLa1 run:lane2 chunk:01); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c5/13517e1e54733a785aec7f3725e62a started: 1501024217153; exited: -; ]
  477. Jul-25 20:58:27.449 [Actor Thread 150] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:05 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/57/ec27b5efcb606d8c09d7b8e58ca547
  478. Jul-25 20:58:27.610 [Actor Thread 150] INFO nextflow.Session - [57/ec27b5] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:05 parsing)
  479. Jul-25 21:00:47.408 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 64 -- first: TaskHandler[jobId: 4681761; id: 20; name: map_runs (library:HeLa1 run:lane2 chunk:01); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c5/13517e1e54733a785aec7f3725e62a started: 1501024217153; exited: -; ]
  480. Jul-25 21:03:52.484 [Actor Thread 152] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:08 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/25/928da8454dbb41feb6218d39845682
  481. Jul-25 21:03:52.592 [Actor Thread 152] INFO nextflow.Session - [25/928da8] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:08 parsing)
  482. Jul-25 21:03:52.603 [Actor Thread 150] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:04 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/50/7c40a5a20c6fa5e4e54ec53ee2296e
  483. Jul-25 21:03:52.791 [Actor Thread 150] INFO nextflow.Session - [50/7c40a5] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:04 parsing)
  484. Jul-25 21:04:18.492 [Actor Thread 154] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:02 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d1/d99f1be7372243859b18829b2d4a66
  485. Jul-25 21:04:18.607 [Actor Thread 154] INFO nextflow.Session - [d1/d99f1b] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:02 parsing)
  486. Jul-25 21:04:32.438 [Actor Thread 156] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:10 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9e/d2fc6462ac94e3c4c1e4065c8e6575
  487. Jul-25 21:04:32.561 [Actor Thread 156] INFO nextflow.Session - [9e/d2fc64] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:10 parsing)
  488. Jul-25 21:05:22.547 [Actor Thread 158] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:06 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/fd3ec18122af2b0bf5b17811dae6a3
  489. Jul-25 21:05:22.665 [Actor Thread 158] INFO nextflow.Session - [49/fd3ec1] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:06 parsing)
  490. Jul-25 21:05:32.451 [Actor Thread 156] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:07 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/54/121d7321aae31f5487843a20fb3b4e
  491. Jul-25 21:05:32.634 [Actor Thread 156] INFO nextflow.Session - [54/121d73] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:07 parsing)
  492. Jul-25 21:05:47.415 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 63 -- first: TaskHandler[jobId: 4681761; id: 20; name: map_runs (library:HeLa1 run:lane2 chunk:01); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c5/13517e1e54733a785aec7f3725e62a started: 1501024217153; exited: -; ]
  493. Jul-25 21:07:47.465 [Actor Thread 160] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:05 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/73/a0289073dd2051be7e212160a06652
  494. Jul-25 21:07:47.690 [Actor Thread 160] INFO nextflow.Session - [73/a02890] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:05 parsing)
  495. Jul-25 21:08:07.449 [Actor Thread 162] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:01 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/a5/1aee407ec5953243e00af7941d41ee
  496. Jul-25 21:08:07.596 [Actor Thread 162] INFO nextflow.Session - [a5/1aee40] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:01 parsing)
  497. Jul-25 21:08:12.497 [Actor Thread 160] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:06 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/99/ced47fd298b3915d8d54d0fcdc3b6f
  498. Jul-25 21:08:12.598 [Actor Thread 160] INFO nextflow.Session - [99/ced47f] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:06 parsing)
  499. Jul-25 21:08:27.453 [Actor Thread 164] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:07 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/5f/84f2f52b5cfd1a3778154009a1bf15
  500. Jul-25 21:08:27.578 [Actor Thread 164] INFO nextflow.Session - [5f/84f2f5] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:07 parsing)
  501. Jul-25 21:08:37.456 [Actor Thread 160] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:01 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/53/ed0dbf8adbc3aef2b826c7eb23f91f
  502. Jul-25 21:08:37.584 [Actor Thread 160] INFO nextflow.Session - [53/ed0dbf] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:01 parsing)
  503. Jul-25 21:08:57.443 [Actor Thread 166] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane2 chunk:09 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/2b/313a6c87da74314a9827372f109595
  504. Jul-25 21:08:57.550 [Actor Thread 166] INFO nextflow.Session - [2b/313a6c] Submitted process > parse_runs (library:HeLa1 run:lane2 chunk:09 parsing)
  505. Jul-25 21:09:42.658 [Actor Thread 168] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:01 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/4a692494d619b244b1dd4cb372b627
  506. Jul-25 21:09:42.988 [Actor Thread 168] INFO nextflow.Session - [49/4a6924] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:01 parsing)
  507. Jul-25 21:10:17.471 [Actor Thread 170] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:04 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c9/3b6075448f6288317e4175305aa8d6
  508. Jul-25 21:10:17.607 [Actor Thread 170] INFO nextflow.Session - [c9/3b6075] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:04 parsing)
  509. Jul-25 21:10:47.422 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 63 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  510. Jul-25 21:11:17.773 [Actor Thread 172] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:12 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d9/8e389912a1f280af249b45fe52b3c9
  511. Jul-25 21:11:18.319 [Actor Thread 172] INFO nextflow.Session - [d9/8e3899] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:12 parsing)
  512. Jul-25 21:11:47.466 [Actor Thread 174] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:06 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/4c/ef353458deff667ece18fd4428953e
  513. Jul-25 21:11:47.820 [Actor Thread 174] INFO nextflow.Session - [4c/ef3534] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:06 parsing)
  514. Jul-25 21:11:57.459 [Actor Thread 172] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:02 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/89/c95d6739f2c9f744d57b2a7b346666
  515. Jul-25 21:11:57.572 [Actor Thread 172] INFO nextflow.Session - [89/c95d67] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:02 parsing)
  516. Jul-25 21:12:02.547 [Actor Thread 174] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:02 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/03/f3581c6d28465ee6d213fb1d142d84
  517. Jul-25 21:12:02.677 [Actor Thread 174] INFO nextflow.Session - [03/f3581c] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:02 parsing)
  518. Jul-25 21:13:32.502 [Actor Thread 176] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:08 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ca/4351efb38f74bb8cb354024cd1b00f
  519. Jul-25 21:13:32.896 [Actor Thread 176] INFO nextflow.Session - [ca/4351ef] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:08 parsing)
  520. Jul-25 21:13:42.448 [Actor Thread 174] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:12 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/50/63d50bda70836ccb367ceff1df6274
  521. Jul-25 21:13:42.660 [Actor Thread 174] INFO nextflow.Session - [50/63d50b] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:12 parsing)
  522. Jul-25 21:14:07.464 [Actor Thread 179] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:10 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f2/cb83c2e1849a2c6e813dfbc616959e
  523. Jul-25 21:14:07.601 [Actor Thread 179] INFO nextflow.Session - [f2/cb83c2] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:10 parsing)
  524. Jul-25 21:14:17.482 [Actor Thread 181] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:00 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b2/ab18ad52d79534a475bc32d860f149
  525. Jul-25 21:14:17.834 [Actor Thread 181] INFO nextflow.Session - [b2/ab18ad] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:00 parsing)
  526. Jul-25 21:15:37.455 [Actor Thread 184] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:09 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/f3a9d6299ae2e1232f583a303df044
  527. Jul-25 21:15:37.724 [Actor Thread 184] INFO nextflow.Session - [f5/f3a9d6] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:09 parsing)
  528. Jul-25 21:15:47.430 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 61 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  529. Jul-25 21:20:47.440 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 57 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  530. Jul-25 21:23:22.700 [Actor Thread 194] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:11 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/17/22e06e8b71c34ce5195983e98b1310
  531. Jul-25 21:23:22.826 [Actor Thread 194] INFO nextflow.Session - [17/22e06e] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:11 parsing)
  532. Jul-25 21:23:47.497 [Actor Thread 196] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:03 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b5/2510a064d572bbac5961cd3c707dca
  533. Jul-25 21:23:47.613 [Actor Thread 196] INFO nextflow.Session - [b5/2510a0] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:03 parsing)
  534. Jul-25 21:24:57.494 [Actor Thread 199] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:11 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/51/73e7d0ae2c20e4a5f5e33e9b510d39
  535. Jul-25 21:24:57.615 [Actor Thread 199] INFO nextflow.Session - [51/73e7d0] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:11 parsing)
  536. Jul-25 21:25:47.451 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 55 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  537. Jul-25 21:30:47.460 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 50 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  538. Jul-25 21:34:07.505 [Actor Thread 215] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:08 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/4c/2d98e48df90af0c2b654424c3eb0cb
  539. Jul-25 21:34:07.645 [Actor Thread 215] INFO nextflow.Session - [4c/2d98e4] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:08 parsing)
  540. Jul-25 21:35:47.469 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 44 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  541. Jul-25 21:37:37.534 [Actor Thread 219] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:11 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/31/e6ad3e8ff5eca6327fc942a453dae8
  542. Jul-25 21:37:37.667 [Actor Thread 219] INFO nextflow.Session - [31/e6ad3e] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:11 parsing)
  543. Jul-25 21:40:47.478 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 44 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  544. Jul-25 21:41:22.519 [Actor Thread 221] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane1 chunk:03 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b1/c9bd297bc175b0ab988df1af59eece
  545. Jul-25 21:41:22.627 [Actor Thread 221] INFO nextflow.Session - [b1/c9bd29] Submitted process > parse_runs (library:HeLa1 run:lane1 chunk:03 parsing)
  546. Jul-25 21:45:47.487 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 42 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  547. Jul-25 21:50:47.498 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 39 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  548. Jul-25 21:55:47.508 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 33 -- first: TaskHandler[jobId: 4681782; id: 35; name: map_runs (library:HeLa1 run:lane4 chunk:04); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/67db5a09e222cfe5a6dc9be736a9ba started: 1501025632424; exited: -; ]
  549. Jul-25 21:59:22.546 [Actor Thread 243] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane4 chunk:04 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83
  550. Jul-25 21:59:22.744 [Actor Thread 243] INFO nextflow.Session - [f4/be5913] Submitted process > parse_runs (library:HeLa1 run:lane4 chunk:04 parsing)
  551. Jul-25 22:00:47.523 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 26 -- first: TaskHandler[jobId: 4681815; id: 67; name: map_runs (library:HeLa1 run:lane5 chunk:09); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/68/64cc37a83c4cfb55d85a9d3e1e07e2 started: 1501028497343; exited: -; ]
  552. Jul-25 22:03:37.550 [Actor Thread 259] DEBUG nextflow.executor.GridTaskHandler - Launching process > parse_runs (library:HeLa1 run:lane5 chunk:09 parsing) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d8/6dea67ff94657cf96fe1eb05dd6fdc
  553. Jul-25 22:03:37.561 [Actor Thread 258] DEBUG nextflow.processor.TaskProcessor - <map_runs> Sending poison pills and terminating process
  554. Jul-25 22:03:37.562 [Actor Thread 258] DEBUG nextflow.Session - <<< barrier arrive (process: map_runs)
  555. Jul-25 22:03:37.562 [Actor Thread 257] DEBUG nextflow.processor.TaskProcessor - <parse_runs> Poison pill arrived
  556. Jul-25 22:03:37.562 [Actor Thread 258] DEBUG nextflow.processor.StateObj - <parse_runs> State before poison: StateObj[submitted: 65; completed: 41; poisoned: false ]
  557. Jul-25 22:03:37.717 [Actor Thread 259] INFO nextflow.Session - [d8/6dea67] Submitted process > parse_runs (library:HeLa1 run:lane5 chunk:09 parsing)
  558. Jul-25 22:03:37.719 [Actor Thread 257] DEBUG nextflow.processor.TaskProcessor - <parse_runs> After stop
  559. Jul-25 22:05:47.535 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 23 -- first: TaskHandler[jobId: 4681987; id: 94; name: parse_runs (library:HeLa1 run:lane4 chunk:05 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f3/0bc2f6aa2bab757037137bbd85003a started: 1501029482570; exited: -; ]
  560. Jul-25 22:10:47.547 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 22 -- first: TaskHandler[jobId: 4681987; id: 94; name: parse_runs (library:HeLa1 run:lane4 chunk:05 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f3/0bc2f6aa2bab757037137bbd85003a started: 1501029482570; exited: -; ]
  561. Jul-25 22:15:47.553 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 19 -- first: TaskHandler[jobId: 4681987; id: 94; name: parse_runs (library:HeLa1 run:lane4 chunk:05 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f3/0bc2f6aa2bab757037137bbd85003a started: 1501029482570; exited: -; ]
  562. Jul-25 22:20:47.564 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 17 -- first: TaskHandler[jobId: 4682031; id: 108; name: parse_runs (library:HeLa1 run:lane4 chunk:02 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d1/d99f1be7372243859b18829b2d4a66 started: 1501031062449; exited: -; ]
  563. Jul-25 22:25:47.588 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 15 -- first: TaskHandler[jobId: 4682031; id: 108; name: parse_runs (library:HeLa1 run:lane4 chunk:02 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d1/d99f1be7372243859b18829b2d4a66 started: 1501031062449; exited: -; ]
  564. Jul-25 22:30:47.601 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 12 -- first: TaskHandler[jobId: 4682031; id: 108; name: parse_runs (library:HeLa1 run:lane4 chunk:02 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d1/d99f1be7372243859b18829b2d4a66 started: 1501031062449; exited: -; ]
  565. Jul-25 22:35:47.607 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 8 -- first: TaskHandler[jobId: 4682049; id: 118; name: parse_runs (library:HeLa1 run:lane5 chunk:01 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/4a692494d619b244b1dd4cb372b627 started: 1501031407449; exited: -; ]
  566. Jul-25 22:40:47.613 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682049; id: 118; name: parse_runs (library:HeLa1 run:lane5 chunk:01 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/49/4a692494d619b244b1dd4cb372b627 started: 1501031407449; exited: -; ]
  567. Jul-25 22:45:47.636 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682083; id: 124; name: parse_runs (library:HeLa1 run:lane5 chunk:08 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ca/4351efb38f74bb8cb354024cd1b00f started: 1501031627499; exited: -; ]
  568. Jul-25 22:50:47.644 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 2 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  569. Jul-25 22:55:47.652 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 2 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  570. Jul-25 23:00:47.691 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 2 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  571. Jul-25 23:05:47.697 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 2 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  572. Jul-25 23:10:47.706 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 2 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  573. Jul-25 23:15:47.713 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 1 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  574. Jul-25 23:20:47.723 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 1 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  575. Jul-25 23:25:47.730 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 1 -- first: TaskHandler[jobId: 4682150; id: 135; name: parse_runs (library:HeLa1 run:lane4 chunk:04 parsing); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f4/be59136133104d9e6ac585c5528e83 started: 1501034367534; exited: -; ]
  576. Jul-25 23:29:57.816 [Actor Thread 297] DEBUG nextflow.processor.TaskProcessor - <parse_runs> Sending poison pills and terminating process
  577. Jul-25 23:29:57.817 [Actor Thread 297] DEBUG nextflow.Session - <<< barrier arrive (process: parse_runs)
  578. Jul-25 23:29:57.949 [Actor Thread 302] DEBUG nextflow.processor.TaskProcessor - <premerge_pairsam_chunks> Poison pill arrived
  579. Jul-25 23:29:57.950 [Actor Thread 299] DEBUG nextflow.processor.StateObj - <premerge_pairsam_chunks> State before poison: StateObj[submitted: 10; completed: 0; poisoned: false ]
  580. Jul-25 23:29:58.039 [Actor Thread 296] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673
  581. Jul-25 23:29:58.249 [Actor Thread 296] INFO nextflow.Session - [39/efe432] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging)
  582. Jul-25 23:29:58.250 [Actor Thread 304] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:100502091204 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/6a/11c9feb5f13d62e690e3506e63be48
  583. Jul-25 23:29:58.367 [Actor Thread 304] INFO nextflow.Session - [6a/11c9fe] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:100502091204 premerging)
  584. Jul-25 23:29:58.368 [Actor Thread 308] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:100301040809 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/76/4eefb1ee090e91c4d993e8ec843dba
  585. Jul-25 23:29:58.694 [Actor Thread 308] INFO nextflow.Session - [76/4eefb1] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:100301040809 premerging)
  586. Jul-25 23:29:58.695 [Actor Thread 306] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane4 batch:091105020804 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/fa/db77407ed462a749e3cfaa81352255
  587. Jul-25 23:29:58.809 [Actor Thread 306] INFO nextflow.Session - [fa/db7740] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane4 batch:091105020804 premerging)
  588. Jul-25 23:29:58.809 [Actor Thread 301] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185
  589. Jul-25 23:29:58.959 [Actor Thread 301] INFO nextflow.Session - [bc/fbbdd3] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging)
  590. Jul-25 23:29:58.960 [Actor Thread 305] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane2 batch:070804060901 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/f76deeab314d4b925a94a177242338
  591. Jul-25 23:29:59.107 [Actor Thread 305] INFO nextflow.Session - [39/f76dee] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane2 batch:070804060901 premerging)
  592. Jul-25 23:29:59.107 [Actor Thread 307] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:010210061103 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/8e/540368345c2a4a8a063f4c50267bb4
  593. Jul-25 23:29:59.249 [Actor Thread 307] INFO nextflow.Session - [8e/540368] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:010210061103 premerging)
  594. Jul-25 23:29:59.250 [Actor Thread 298] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane4 batch:01030010071206 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/b7/e0fc6f080f4d813ca93a0dbff91677
  595. Jul-25 23:29:59.392 [Actor Thread 298] INFO nextflow.Session - [b7/e0fc6f] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane4 batch:01030010071206 premerging)
  596. Jul-25 23:29:59.392 [Actor Thread 300] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane2 batch:02051012110300 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9c/66eb204e202a6e11011d9a6dc8613f
  597. Jul-25 23:29:59.526 [Actor Thread 300] INFO nextflow.Session - [9c/66eb20] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane2 batch:02051012110300 premerging)
  598. Jul-25 23:29:59.526 [Actor Thread 303] DEBUG nextflow.executor.GridTaskHandler - Launching process > premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:12070600021105 premerging) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/3e/f715abd02855914f40122af20ae2e9
  599. Jul-25 23:29:59.809 [Actor Thread 303] INFO nextflow.Session - [3e/f715ab] Submitted process > premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:12070600021105 premerging)
  600. Jul-25 23:29:59.812 [Actor Thread 302] DEBUG nextflow.processor.TaskProcessor - <premerge_pairsam_chunks> After stop
  601. Jul-25 23:30:47.744 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 10 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  602. Jul-25 23:35:47.750 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 10 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  603. Jul-25 23:40:47.761 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 10 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  604. Jul-25 23:45:47.769 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 10 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  605. Jul-25 23:50:47.774 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 10 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  606. Jul-25 23:55:47.789 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 10 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  607. Jul-26 00:00:47.800 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 9 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  608. Jul-26 00:05:47.812 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 9 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  609. Jul-26 00:10:47.820 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 9 -- first: TaskHandler[jobId: 4682337; id: 137; name: premerge_pairsam_chunks (library:HeLa1 run:lane3 batch:07110801030600 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/39/efe4329b97147fb7ca2ae1706f0673 started: 1501039802745; exited: -; ]
  610. Jul-26 00:15:47.840 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 8 -- first: TaskHandler[jobId: 4682339; id: 146; name: premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:100301040809 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/76/4eefb1ee090e91c4d993e8ec843dba started: 1501040867776; exited: -; ]
  611. Jul-26 00:20:47.849 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 8 -- first: TaskHandler[jobId: 4682339; id: 146; name: premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:100301040809 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/76/4eefb1ee090e91c4d993e8ec843dba started: 1501040867776; exited: -; ]
  612. Jul-26 00:25:47.860 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 6 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  613. Jul-26 00:30:47.873 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 6 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  614. Jul-26 00:35:47.896 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 6 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  615. Jul-26 00:40:47.903 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 6 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  616. Jul-26 00:45:47.910 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 6 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  617. Jul-26 00:50:47.920 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  618. Jul-26 00:55:47.927 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682341; id: 140; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:00041208050709 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/bc/fbbdd37b4a7083ff7023cfc3ca7185 started: 1501042342840; exited: -; ]
  619. Jul-26 01:00:47.937 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682343; id: 145; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:010210061103 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/8e/540368345c2a4a8a063f4c50267bb4 started: 1501042992856; exited: -; ]
  620. Jul-26 01:05:47.946 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682343; id: 145; name: premerge_pairsam_chunks (library:HeLa1 run:lane1 batch:010210061103 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/8e/540368345c2a4a8a063f4c50267bb4 started: 1501042992856; exited: -; ]
  621. Jul-26 01:10:47.959 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 1 -- first: TaskHandler[jobId: 4682346; id: 141; name: premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:12070600021105 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/3e/f715abd02855914f40122af20ae2e9 started: 1501044597923; exited: -; ]
  622. Jul-26 01:15:47.965 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 1 -- first: TaskHandler[jobId: 4682346; id: 141; name: premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:12070600021105 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/3e/f715abd02855914f40122af20ae2e9 started: 1501044597923; exited: -; ]
  623. Jul-26 01:20:47.977 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 1 -- first: TaskHandler[jobId: 4682346; id: 141; name: premerge_pairsam_chunks (library:HeLa1 run:lane5 batch:12070600021105 premerging); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/3e/f715abd02855914f40122af20ae2e9 started: 1501044597923; exited: -; ]
  624. Jul-26 01:25:18.083 [Actor Thread 324] DEBUG nextflow.processor.TaskProcessor - <premerge_pairsam_chunks> Sending poison pills and terminating process
  625. Jul-26 01:25:18.084 [Actor Thread 324] DEBUG nextflow.Session - <<< barrier arrive (process: premerge_pairsam_chunks)
  626. Jul-26 01:25:18.099 [Actor Thread 323] DEBUG nextflow.processor.TaskProcessor - <merge_pairsam_into_runs> Poison pill arrived
  627. Jul-26 01:25:18.099 [Actor Thread 324] DEBUG nextflow.processor.StateObj - <merge_pairsam_into_runs> State before poison: StateObj[submitted: 5; completed: 0; poisoned: false ]
  628. Jul-26 01:25:18.122 [Actor Thread 329] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane2) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231
  629. Jul-26 01:25:18.349 [Actor Thread 329] INFO nextflow.Session - [f5/77654b] Submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane2)
  630. Jul-26 01:25:18.349 [Actor Thread 330] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane1) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/c0/a1ae94d280838213fa1103a4bac371
  631. Jul-26 01:25:18.511 [Actor Thread 330] INFO nextflow.Session - [c0/a1ae94] Submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane1)
  632. Jul-26 01:25:18.512 [Actor Thread 328] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane5) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/72/cc8d6387fb0046ab921aee99c6ec6d
  633. Jul-26 01:25:18.679 [Actor Thread 328] INFO nextflow.Session - [72/cc8d63] Submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane5)
  634. Jul-26 01:25:18.680 [Actor Thread 325] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane3) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/d0/ba11f296923904aafe8ade3b70394d
  635. Jul-26 01:25:18.812 [Actor Thread 325] INFO nextflow.Session - [d0/ba11f2] Submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane3)
  636. Jul-26 01:25:18.813 [Actor Thread 327] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane4) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ed/415ddd6f6ae159075a8428e7900390
  637. Jul-26 01:25:19.413 [Actor Thread 327] INFO nextflow.Session - [ed/415ddd] Submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane4)
  638. Jul-26 01:25:19.414 [Actor Thread 323] DEBUG nextflow.processor.TaskProcessor - <merge_pairsam_into_runs> After stop
  639. Jul-26 01:25:47.981 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: SUBMITTED; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: -; exited: -; ]
  640. Jul-26 01:30:47.994 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  641. Jul-26 01:35:48.004 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  642. Jul-26 01:40:48.010 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  643. Jul-26 01:45:48.029 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  644. Jul-26 01:50:48.036 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  645. Jul-26 01:55:48.051 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  646. Jul-26 02:00:48.059 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  647. Jul-26 02:05:48.071 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  648. Jul-26 02:10:48.079 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  649. Jul-26 02:15:48.087 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  650. Jul-26 02:20:48.094 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  651. Jul-26 02:25:48.101 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  652. Jul-26 02:30:48.107 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  653. Jul-26 02:35:48.121 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  654. Jul-26 02:40:48.127 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  655. Jul-26 02:45:48.132 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  656. Jul-26 02:50:48.146 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  657. Jul-26 02:55:48.156 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  658. Jul-26 03:00:48.164 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  659. Jul-26 03:05:48.171 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  660. Jul-26 03:10:48.196 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  661. Jul-26 03:15:48.208 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  662. Jul-26 03:20:48.216 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  663. Jul-26 03:25:48.222 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  664. Jul-26 03:30:48.235 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  665. Jul-26 03:35:48.244 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  666. Jul-26 03:40:48.253 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  667. Jul-26 03:45:48.261 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  668. Jul-26 03:50:48.269 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  669. Jul-26 03:55:48.279 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  670. Jul-26 04:00:48.290 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  671. Jul-26 04:05:48.298 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  672. Jul-26 04:10:48.307 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 5 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  673. Jul-26 04:15:48.315 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 4 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  674. Jul-26 04:20:48.325 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 4 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  675. Jul-26 04:25:48.332 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 4 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  676. Jul-26 04:30:48.348 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 4 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  677. Jul-26 04:35:48.360 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  678. Jul-26 04:40:48.367 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  679. Jul-26 04:45:48.373 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  680. Jul-26 04:50:48.375 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  681. Jul-26 04:55:48.384 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  682. Jul-26 05:00:48.388 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  683. Jul-26 05:05:48.394 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  684. Jul-26 05:10:48.401 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  685. Jul-26 05:15:48.414 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  686. Jul-26 05:20:48.427 [Thread-1] DEBUG n.processor.TaskPollingMonitor - !! executor lsf > tasks to be completed: 3 -- first: TaskHandler[jobId: 4682425; id: 150; name: merge_pairsam_into_runs (library:HeLa1 run:lane2); status: RUNNING; exit: -; workDir: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/f5/77654ba1835015b9e445d446493231 started: 1501046762985; exited: -; ]
  687. Jul-26 05:25:33.490 [Thread-1] WARN nextflow.processor.TaskProcessor - Process `merge_pairsam_into_runs (library:HeLa1 run:lane2)` terminated with an error exit status (140) -- Execution is retried (1)
  688. Jul-26 05:25:33.512 [Thread-1] WARN nextflow.processor.TaskProcessor - Process `merge_pairsam_into_runs (library:HeLa1 run:lane5)` terminated with an error exit status (140) -- Execution is retried (1)
  689. Jul-26 05:25:33.525 [pool-2-thread-2] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane2) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/9d/6e4e7cf743e5d18b5116917c718cda
  690. Jul-26 05:25:33.714 [pool-2-thread-2] INFO nextflow.Session - [9d/6e4e7c] Re-submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane2)
  691. Jul-26 05:25:33.721 [pool-2-thread-3] DEBUG nextflow.executor.GridTaskHandler - Launching process > merge_pairsam_into_runs (library:HeLa1 run:lane5) -- work folder: /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/10/da3468bae5d6fcfcbe62c40ef8d3c9
  692. Jul-26 05:25:33.997 [pool-2-thread-3] INFO nextflow.Session - [10/da3468] Re-submitted process > merge_pairsam_into_runs (library:HeLa1 run:lane5)
  693. Jul-26 05:25:38.628 [Thread-1] ERROR nextflow.processor.TaskProcessor - Error executing process > 'merge_pairsam_into_runs (library:HeLa1 run:lane4)'
  694.  
  695. Caused by:
  696. Process `merge_pairsam_into_runs (library:HeLa1 run:lane4)` terminated with an error exit status (140)
  697.  
  698. Command executed:
  699.  
  700. pairsamtools merge HeLa1.lane4.091105020804.premerged.pairsam.gz HeLa1.lane4.01030010071206.premerged.pairsam.gz --npzipout 8 -o HeLa1.lane4.pairsam.gz
  701.  
  702. pairsamtools stats HeLa1.lane4.pairsam.gz -o HeLa1.lane4.stats
  703.  
  704. Command exit status:
  705. 140
  706.  
  707. Command output:
  708. (empty)
  709.  
  710. Command wrapper:
  711. nxf_kill() {
  712. declare -a ALL_CHILD
  713. while read P PP;do
  714. ALL_CHILD[$PP]+=" $P"
  715. done < <(ps -e -o pid= -o ppid=)
  716.  
  717. walk() {
  718. [[ $1 != $$ ]] && kill $1 2>/dev/null || true
  719. for i in ${ALL_CHILD[$1]:=}; do walk $i; done
  720. }
  721.  
  722. walk $1
  723. }
  724.  
  725. nxf_mktemp() {
  726. local base=${1:-/tmp}
  727. if [[ $(uname) = Darwin ]]; then mktemp -d $base/nxf.XXXXXXXXXX
  728. else TMPDIR="$base" mktemp -d -t nxf.XXXXXXXXXX
  729. fi
  730. }
  731.  
  732. on_exit() {
  733. exit_status=${ret:=$?}
  734. printf $exit_status > .exitcode
  735. set +u
  736. [[ "$COUT" ]] && rm -f "$COUT" || true
  737. [[ "$CERR" ]] && rm -f "$CERR" || true
  738. exit $exit_status
  739. }
  740.  
  741. (... more ...)
  742. ------------------------------------------------------------
  743.  
  744. TERM_RUNLIMIT: job killed after reaching LSF run time limit.
  745. Exited with exit code 140.
  746.  
  747. Resource usage summary:
  748.  
  749. CPU time : 74482.48 sec.
  750. Max Memory : 1313 MB
  751. Average Memory : 388.81 MB
  752. Total Requested Memory : 262144.00 MB
  753. Delta Memory : 260831.00 MB
  754. Max Processes : 24
  755. Max Threads : 43
  756. Run time : 14405 sec.
  757. Turnaround time : 14417 sec.
  758.  
  759. The output (if any) is above this job summary.
  760.  
  761. Work dir:
  762. /farline/umw_job_dekker/HPCC/sv49w/distiller-nf_5lanes/work/ed/415ddd6f6ae159075a8428e7900390
  763.  
  764. Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
  765. Jul-26 05:25:38.658 [Thread-1] DEBUG nextflow.Session - Session aborted -- Cause: Process `merge_pairsam_into_runs (library:HeLa1 run:lane4)` terminated with an error exit status (140)
  766. Jul-26 05:25:38.672 [main] DEBUG nextflow.Session - Session await > all process finished
  767. Jul-26 05:25:38.672 [main] DEBUG nextflow.Session - Session await > all barriers passed
  768. Jul-26 05:25:38.701 [main] WARN n.processor.TaskPollingMonitor - Killing pending tasks (2)
  769. Jul-26 05:25:38.727 [Actor Thread 336] DEBUG nextflow.processor.TaskProcessor - <merge_runs_into_libraries> After stop
  770. Jul-26 05:25:38.738 [Actor Thread 336] DEBUG nextflow.processor.TaskProcessor - <merge_stats_runs_into_libraries> After stop
  771. Jul-26 05:25:39.010 [Actor Thread 336] DEBUG nextflow.processor.TaskProcessor - <index_pairs> After stop
  772. Jul-26 05:25:39.010 [Actor Thread 339] DEBUG nextflow.processor.TaskProcessor - <bin_library_pairs> After stop
  773. Jul-26 05:25:39.072 [Actor Thread 341] DEBUG nextflow.processor.TaskProcessor - <filter_make_pairs> After stop
  774. Jul-26 05:25:39.073 [Actor Thread 339] DEBUG nextflow.processor.TaskProcessor - <make_library_group_coolers> Poison pill arrived
  775. Jul-26 05:25:39.073 [Actor Thread 339] DEBUG nextflow.processor.TaskProcessor - <make_library_group_coolers> After stop
  776. Jul-26 05:25:39.074 [Actor Thread 338] DEBUG nextflow.processor.StateObj - <make_library_group_coolers> State before poison: StateObj[submitted: 0; completed: 0; poisoned: false ]
  777. Jul-26 05:25:39.074 [Actor Thread 338] DEBUG nextflow.processor.TaskProcessor - <make_library_group_coolers> Sending poison pills and terminating process
  778. Jul-26 05:25:39.075 [Actor Thread 338] DEBUG nextflow.Session - <<< barrier arrive (process: make_library_group_coolers)
  779. Jul-26 05:25:39.086 [Actor Thread 343] DEBUG nextflow.processor.TaskProcessor - <merge_stats_libraries_into_groups> After stop
  780. Jul-26 05:25:39.086 [Thread-1] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: lsf)
  781. Jul-26 05:25:39.203 [main] DEBUG nextflow.trace.TraceFileObserver - Flow completing -- flushing trace file
  782. Jul-26 05:25:39.211 [main] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline
  783. Jul-26 05:25:39.750 [main] DEBUG nextflow.CacheDB - Closing CacheDB done
  784. Jul-26 05:25:39.836 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
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