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misnomer001

armenia_mba = kura_a + zevakinsiky success

misnomer001
Jan 21st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1764404358
  4.  
  5. left pops:
  6. Armenia_MBA.SG
  7. Caucasus_Kura_Araxes
  8. Zevakinskiy_BA
  9.  
  10. right pops:
  11. Sarazm_EN
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. CHG
  17. EEHG
  18. WEHG
  19. WSHG
  20. Onge.DG
  21. Russia_Shamanka_EN.SG
  22. Steppe_Eneolithic
  23. Caucasus_Eneolithic
  24. Kazakhstan_Botai.SG
  25.  
  26. 0 Armenia_MBA.SG 5
  27. 1 Caucasus_Kura_Araxes 4
  28. 2 Zevakinskiy_BA 1
  29. 3 Sarazm_EN 2
  30. 4 Ganj_Dareh_N 7
  31. 5 PPN 8
  32. 6 Anatolia_N 22
  33. 7 Iberia_MN 4
  34. 8 CHG 2
  35. 9 EEHG 4
  36. 10 WEHG 36
  37. 11 WSHG 3
  38. 12 Onge.DG 2
  39. 13 Russia_Shamanka_EN.SG 10
  40. 14 Steppe_Eneolithic 3
  41. 15 Caucasus_Eneolithic 3
  42. 16 Kazakhstan_Botai.SG 3
  43. jackknife block size: 0.050
  44. snps: 1150475 indivs: 119
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150475
  47. coverage: Armenia_MBA.SG 1062966
  48. coverage: Caucasus_Kura_Araxes 967288
  49. coverage: Zevakinskiy_BA 607127
  50. coverage: Sarazm_EN 867960
  51. coverage: Ganj_Dareh_N 1029695
  52. coverage: PPN 835499
  53. coverage: Anatolia_N 1134099
  54. coverage: Iberia_MN 967760
  55. coverage: CHG 1149558
  56. coverage: EEHG 1029995
  57. coverage: WEHG 1141246
  58. coverage: WSHG 858019
  59. coverage: Onge.DG 1120748
  60. coverage: Russia_Shamanka_EN.SG 1149998
  61. coverage: Steppe_Eneolithic 1017729
  62. coverage: Caucasus_Eneolithic 784983
  63. coverage: Kazakhstan_Botai.SG 1149870
  64. dof (jackknife): 462.790
  65. numsnps used: 1150475
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 12 chisq: 16.368 tail: 0.174953605 dofdiff: 14 chisqdiff: -16.368 taildiff: 1
  69. B:
  70. scale 1.000
  71. Ganj_Dareh_N -0.025
  72. PPN 0.089
  73. Anatolia_N 0.142
  74. Iberia_MN 0.494
  75. CHG -0.235
  76. EEHG 1.655
  77. WEHG 1.634
  78. WSHG 1.623
  79. Onge.DG 0.532
  80. Russia_Shamanka_EN.SG 1.110
  81. Steppe_Eneolithic 0.797
  82. Caucasus_Eneolithic -0.151
  83. Kazakhstan_Botai.SG 1.567
  84. A:
  85. scale 600.507
  86. Caucasus_Kura_Araxes -0.456
  87. Zevakinskiy_BA 1.339
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 16.368 taildiff: 0.174953605
  93. B:
  94. scale 1.000 1.000
  95. Ganj_Dareh_N -0.025 1.383
  96. PPN 0.069 0.866
  97. Anatolia_N 0.118 0.480
  98. Iberia_MN 0.476 0.822
  99. CHG -0.251 0.750
  100. EEHG 1.657 0.509
  101. WEHG 1.625 -0.015
  102. WSHG 1.628 -2.403
  103. Onge.DG 0.507 0.509
  104. Russia_Shamanka_EN.SG 1.131 -0.081
  105. Steppe_Eneolithic 0.785 -0.963
  106. Caucasus_Eneolithic -0.185 0.409
  107. Kazakhstan_Botai.SG 1.571 1.216
  108. A:
  109. scale 616.947 5720.356
  110. Caucasus_Kura_Araxes -0.521 -1.133
  111. Zevakinskiy_BA 1.315 -0.847
  112.  
  113.  
  114. best coefficients: 0.746 0.254
  115. Jackknife mean: 0.745414818 0.254585182
  116. std. errors: 0.031 0.031
  117.  
  118. error covariance (* 1000000)
  119. 968 -968
  120. -968 968
  121.  
  122.  
  123. summ: Armenia_MBA.SG 2 0.174954 0.745 0.255 968 -968 968
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 00 0 12 16.368 0.174954 0.746 0.254
  127. 01 1 13 77.156 3.76917e-11 1.000 0.000
  128. 10 1 13 311.970 0 0.000 1.000
  129. best pat: 00 0.174954 - -
  130. best pat: 01 3.76917e-11 chi(nested): 60.788 p-value for nested model: 6.35746e-15
  131.  
  132. coeffs: 0.746 0.254
  133.  
  134. ## dscore:: f_4(Base, Fit, Rbase, right2)
  135. ## genstat:: f_4(Base, Fit, right1, right2)
  136.  
  137. details: Caucasus_Kura_Araxes Ganj_Dareh_N -0.000407 -1.456996
  138. details: Zevakinskiy_BA Ganj_Dareh_N -0.000340 -1.065530
  139. dscore: Ganj_Dareh_N f4: -0.000390 Z: -1.560214
  140.  
  141. details: Caucasus_Kura_Araxes PPN -0.000392 -1.324144
  142. details: Zevakinskiy_BA PPN -0.000084 -0.249350
  143. dscore: PPN f4: -0.000314 Z: -1.180910
  144.  
  145. details: Caucasus_Kura_Araxes Anatolia_N -0.000386 -1.347215
  146. details: Zevakinskiy_BA Anatolia_N 0.000049 0.143044
  147. dscore: Anatolia_N f4: -0.000275 Z: -1.060681
  148.  
  149. details: Caucasus_Kura_Araxes Iberia_MN -0.000733 -2.498357
  150. details: Zevakinskiy_BA Iberia_MN 0.000772 2.127426
  151. dscore: Iberia_MN f4: -0.000350 Z: -1.316534
  152.  
  153. details: Caucasus_Kura_Araxes CHG -0.000099 -0.316310
  154. details: Zevakinskiy_BA CHG -0.000735 -2.244847
  155. dscore: CHG f4: -0.000261 Z: -0.963512
  156.  
  157. details: Caucasus_Kura_Araxes EEHG -0.001638 -5.076920
  158. details: Zevakinskiy_BA EEHG 0.003393 9.319108
  159. dscore: EEHG f4: -0.000359 Z: -1.246478
  160.  
  161. details: Caucasus_Kura_Araxes WEHG -0.001541 -5.224525
  162. details: Zevakinskiy_BA WEHG 0.003359 9.279523
  163. dscore: WEHG f4: -0.000295 Z: -1.107865
  164.  
  165. details: Caucasus_Kura_Araxes WSHG -0.001019 -3.396628
  166. details: Zevakinskiy_BA WSHG 0.003762 9.862810
  167. dscore: WSHG f4: 0.000197 Z: 0.712557
  168.  
  169. details: Caucasus_Kura_Araxes Onge.DG -0.000682 -2.185000
  170. details: Zevakinskiy_BA Onge.DG 0.000911 2.466448
  171. dscore: Onge.DG f4: -0.000277 Z: -0.973380
  172.  
  173. details: Caucasus_Kura_Araxes Russia_Shamanka_EN.SG -0.001101 -3.813298
  174. details: Zevakinskiy_BA Russia_Shamanka_EN.SG 0.002342 6.581170
  175. dscore: Russia_Shamanka_EN.SG f4: -0.000226 Z: -0.862299
  176.  
  177. details: Caucasus_Kura_Araxes Steppe_Eneolithic -0.000626 -2.140507
  178. details: Zevakinskiy_BA Steppe_Eneolithic 0.001730 5.311937
  179. dscore: Steppe_Eneolithic f4: -0.000027 Z: -0.106228
  180.  
  181. details: Caucasus_Kura_Araxes Caucasus_Eneolithic -0.000089 -0.277355
  182. details: Zevakinskiy_BA Caucasus_Eneolithic -0.000556 -1.479027
  183. dscore: Caucasus_Eneolithic f4: -0.000208 Z: -0.717804
  184.  
  185. details: Caucasus_Kura_Araxes Kazakhstan_Botai.SG -0.001678 -5.546027
  186. details: Zevakinskiy_BA Kazakhstan_Botai.SG 0.003126 8.807982
  187. dscore: Kazakhstan_Botai.SG f4: -0.000457 Z: -1.667822
  188.  
  189. gendstat: Sarazm_EN Ganj_Dareh_N -1.560
  190. gendstat: Sarazm_EN PPN -1.181
  191. gendstat: Sarazm_EN Anatolia_N -1.061
  192. gendstat: Sarazm_EN Iberia_MN -1.317
  193. gendstat: Sarazm_EN CHG -0.964
  194. gendstat: Sarazm_EN EEHG -1.246
  195. gendstat: Sarazm_EN WEHG -1.108
  196. gendstat: Sarazm_EN WSHG 0.713
  197. gendstat: Sarazm_EN Onge.DG -0.973
  198. gendstat: Sarazm_EN Russia_Shamanka_EN.SG -0.862
  199. gendstat: Sarazm_EN Steppe_Eneolithic -0.106
  200. gendstat: Sarazm_EN Caucasus_Eneolithic -0.718
  201. gendstat: Sarazm_EN Kazakhstan_Botai.SG -1.668
  202. gendstat: Ganj_Dareh_N PPN 0.298
  203. gendstat: Ganj_Dareh_N Anatolia_N 0.544
  204. gendstat: Ganj_Dareh_N Iberia_MN 0.163
  205. gendstat: Ganj_Dareh_N CHG 0.526
  206. gendstat: Ganj_Dareh_N EEHG 0.114
  207. gendstat: Ganj_Dareh_N WEHG 0.405
  208. gendstat: Ganj_Dareh_N WSHG 2.120
  209. gendstat: Ganj_Dareh_N Onge.DG 0.430
  210. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 0.724
  211. gendstat: Ganj_Dareh_N Steppe_Eneolithic 1.636
  212. gendstat: Ganj_Dareh_N Caucasus_Eneolithic 0.679
  213. gendstat: Ganj_Dareh_N Kazakhstan_Botai.SG -0.251
  214. gendstat: PPN Anatolia_N 0.204
  215. gendstat: PPN Iberia_MN -0.165
  216. gendstat: PPN CHG 0.191
  217. gendstat: PPN EEHG -0.159
  218. gendstat: PPN WEHG 0.079
  219. gendstat: PPN WSHG 1.784
  220. gendstat: PPN Onge.DG 0.134
  221. gendstat: PPN Russia_Shamanka_EN.SG 0.358
  222. gendstat: PPN Steppe_Eneolithic 1.141
  223. gendstat: PPN Caucasus_Eneolithic 0.357
  224. gendstat: PPN Kazakhstan_Botai.SG -0.504
  225. gendstat: Anatolia_N Iberia_MN -0.452
  226. gendstat: Anatolia_N CHG 0.063
  227. gendstat: Anatolia_N EEHG -0.342
  228. gendstat: Anatolia_N WEHG -0.115
  229. gendstat: Anatolia_N WSHG 1.868
  230. gendstat: Anatolia_N Onge.DG -0.005
  231. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.244
  232. gendstat: Anatolia_N Steppe_Eneolithic 1.180
  233. gendstat: Anatolia_N Caucasus_Eneolithic 0.270
  234. gendstat: Anatolia_N Kazakhstan_Botai.SG -0.762
  235. gendstat: Iberia_MN CHG 0.338
  236. gendstat: Iberia_MN EEHG -0.033
  237. gendstat: Iberia_MN WEHG 0.288
  238. gendstat: Iberia_MN WSHG 2.056
  239. gendstat: Iberia_MN Onge.DG 0.277
  240. gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.529
  241. gendstat: Iberia_MN Steppe_Eneolithic 1.400
  242. gendstat: Iberia_MN Caucasus_Eneolithic 0.530
  243. gendstat: Iberia_MN Kazakhstan_Botai.SG -0.409
  244. gendstat: CHG EEHG -0.332
  245. gendstat: CHG WEHG -0.136
  246. gendstat: CHG WSHG 1.590
  247. gendstat: CHG Onge.DG -0.055
  248. gendstat: CHG Russia_Shamanka_EN.SG 0.133
  249. gendstat: CHG Steppe_Eneolithic 0.909
  250. gendstat: CHG Caucasus_Eneolithic 0.187
  251. gendstat: CHG Kazakhstan_Botai.SG -0.687
  252. gendstat: EEHG WEHG 0.305
  253. gendstat: EEHG WSHG 2.348
  254. gendstat: EEHG Onge.DG 0.274
  255. gendstat: EEHG Russia_Shamanka_EN.SG 0.520
  256. gendstat: EEHG Steppe_Eneolithic 1.375
  257. gendstat: EEHG Caucasus_Eneolithic 0.508
  258. gendstat: EEHG Kazakhstan_Botai.SG -0.423
  259. gendstat: WEHG WSHG 2.180
  260. gendstat: WEHG Onge.DG 0.072
  261. gendstat: WEHG Russia_Shamanka_EN.SG 0.331
  262. gendstat: WEHG Steppe_Eneolithic 1.319
  263. gendstat: WEHG Caucasus_Eneolithic 0.328
  264. gendstat: WEHG Kazakhstan_Botai.SG -0.764
  265. gendstat: WSHG Onge.DG -1.707
  266. gendstat: WSHG Russia_Shamanka_EN.SG -1.838
  267. gendstat: WSHG Steppe_Eneolithic -0.968
  268. gendstat: WSHG Caucasus_Eneolithic -1.357
  269. gendstat: WSHG Kazakhstan_Botai.SG -3.223
  270. gendstat: Onge.DG Russia_Shamanka_EN.SG 0.243
  271. gendstat: Onge.DG Steppe_Eneolithic 0.947
  272. gendstat: Onge.DG Caucasus_Eneolithic 0.226
  273. gendstat: Onge.DG Kazakhstan_Botai.SG -0.671
  274. gendstat: Russia_Shamanka_EN.SG Steppe_Eneolithic 0.891
  275. gendstat: Russia_Shamanka_EN.SG Caucasus_Eneolithic 0.065
  276. gendstat: Russia_Shamanka_EN.SG Kazakhstan_Botai.SG -1.071
  277. gendstat: Steppe_Eneolithic Caucasus_Eneolithic -0.691
  278. gendstat: Steppe_Eneolithic Kazakhstan_Botai.SG -1.897
  279. gendstat: Caucasus_Eneolithic Kazakhstan_Botai.SG -0.871
  280.  
  281. ## end of run
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