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  1. C:\Users\hadis\OneDrive\Algorithme python and java\Java\a8>java betterDNACompare < "HbB_FASTAs-in (1).txt"
  2. >Human 2144721 HBHU 4HHB
  3. >Gorilla 232230
  4. >Spider-Monkey 122567
  5. >Horse 230633 2MHB
  6. >Deer 229975 1HDS
  7. >Pig 809283 2PGH
  8. >Cow 576143 1HDA
  9. >Gull 122618
  10. >Trout 1942655 1OUT
  11. >Rockcod 1065040 1HBH
  12. >Lamprey 230607 2LHB
  13. >Gull 122618 >Gull 122618
  14. 1.0
  15. >Gull 122618 >Pig 809283 2PGH
  16. 0.6628772394171923
  17. >Gull 122618 >Deer 229975 1HDS
  18. 0.6087531930023418
  19. >Gull 122618 >Spider-Monkey 122567
  20. 0.6984679636812027
  21. >Gull 122618 >Cow 576143 1HDA
  22. 0.634842615559585
  23. >Gull 122618 >Lamprey 230607 2LHB
  24. 0.39184388432413964
  25. >Gull 122618 >Horse 230633 2MHB
  26. 0.6854732321821179
  27. >Gull 122618 >Gorilla 232230
  28. 0.6792289676832165
  29. >Gull 122618 >Sea-Cucumber 576151 1HLB
  30. 0.44624956420962275
  31. >Gull 122618 >Rockcod 1065040 1HBH
  32. 0.5696127639740152
  33. >Gull 122618 >Trout 1942655 1OUT
  34. 0.5745466646330636
  35. >Gull 122618 >Human 2144721 HBHU 4HHB
  36. 0.6836683727007539
  37. >Pig 809283 2PGH >Gull 122618
  38. 0.6628772394171923
  39. >Pig 809283 2PGH >Pig 809283 2PGH
  40. 1.0
  41. >Pig 809283 2PGH >Deer 229975 1HDS
  42. 0.7611138152411295
  43. >Pig 809283 2PGH >Spider-Monkey 122567
  44. 0.8553191489361702
  45. >Pig 809283 2PGH >Cow 576143 1HDA
  46. 0.8151820097664556
  47. >Pig 809283 2PGH >Lamprey 230607 2LHB
  48. 0.3747989553658288
  49. >Pig 809283 2PGH >Horse 230633 2MHB
  50. 0.8245975795442744
  51. >Pig 809283 2PGH >Gorilla 232230
  52. 0.8365199321155126
  53. >Pig 809283 2PGH >Sea-Cucumber 576151 1HLB
  54. 0.4059145943555934
  55. >Pig 809283 2PGH >Rockcod 1065040 1HBH
  56. 0.5585703523160997
  57. >Pig 809283 2PGH >Trout 1942655 1OUT
  58. 0.5331496894603106
  59. >Pig 809283 2PGH >Human 2144721 HBHU 4HHB
  60. 0.8492588143304697
  61. >Deer 229975 1HDS >Gull 122618
  62. 0.6087531930023418
  63. >Deer 229975 1HDS >Pig 809283 2PGH
  64. 0.7611138152411295
  65. >Deer 229975 1HDS >Deer 229975 1HDS
  66. 0.9999999999999999
  67. >Deer 229975 1HDS >Spider-Monkey 122567
  68. 0.7777501827873837
  69. >Deer 229975 1HDS >Cow 576143 1HDA
  70. 0.7642276422764227
  71. >Deer 229975 1HDS >Lamprey 230607 2LHB
  72. 0.37814036043696553
  73. >Deer 229975 1HDS >Horse 230633 2MHB
  74. 0.7391156897563349
  75. >Deer 229975 1HDS >Gorilla 232230
  76. 0.7511990323610656
  77. >Deer 229975 1HDS >Sea-Cucumber 576151 1HLB
  78. 0.41718576517164246
  79. >Deer 229975 1HDS >Rockcod 1065040 1HBH
  80. 0.5369893512711303
  81. >Deer 229975 1HDS >Trout 1942655 1OUT
  82. 0.5371270005300569
  83. >Deer 229975 1HDS >Human 2144721 HBHU 4HHB
  84. 0.7594995741551105
  85. >Spider-Monkey 122567 >Gull 122618
  86. 0.6984679636812027
  87. >Spider-Monkey 122567 >Pig 809283 2PGH
  88. 0.8553191489361702
  89. >Spider-Monkey 122567 >Deer 229975 1HDS
  90. 0.7777501827873837
  91. >Spider-Monkey 122567 >Spider-Monkey 122567
  92. 1.0
  93. >Spider-Monkey 122567 >Cow 576143 1HDA
  94. 0.8401365610858369
  95. >Spider-Monkey 122567 >Lamprey 230607 2LHB
  96. 0.3707688590715726
  97. >Spider-Monkey 122567 >Horse 230633 2MHB
  98. 0.8567769972825875
  99. >Spider-Monkey 122567 >Gorilla 232230
  100. 0.9384309898351689
  101. >Spider-Monkey 122567 >Sea-Cucumber 576151 1HLB
  102. 0.4142839674350902
  103. >Spider-Monkey 122567 >Rockcod 1065040 1HBH
  104. 0.5356781247621613
  105. >Spider-Monkey 122567 >Trout 1942655 1OUT
  106. 0.5577565982046326
  107. >Spider-Monkey 122567 >Human 2144721 HBHU 4HHB
  108. 0.9469235779784737
  109. >Cow 576143 1HDA >Gull 122618
  110. 0.634842615559585
  111. >Cow 576143 1HDA >Pig 809283 2PGH
  112. 0.8151820097664556
  113. >Cow 576143 1HDA >Deer 229975 1HDS
  114. 0.7642276422764227
  115. >Cow 576143 1HDA >Spider-Monkey 122567
  116. 0.8401365610858369
  117. >Cow 576143 1HDA >Cow 576143 1HDA
  118. 0.9999999999999999
  119. >Cow 576143 1HDA >Lamprey 230607 2LHB
  120. 0.42540790549158625
  121. >Cow 576143 1HDA >Horse 230633 2MHB
  122. 0.8138135520189432
  123. >Cow 576143 1HDA >Gorilla 232230
  124. 0.8342044503015148
  125. >Cow 576143 1HDA >Sea-Cucumber 576151 1HLB
  126. 0.39673548256518937
  127. >Cow 576143 1HDA >Rockcod 1065040 1HBH
  128. 0.5504140850529087
  129. >Cow 576143 1HDA >Trout 1942655 1OUT
  130. 0.5812195154989421
  131. >Cow 576143 1HDA >Human 2144721 HBHU 4HHB
  132. 0.8259039085074699
  133. >Lamprey 230607 2LHB >Gull 122618
  134. 0.39184388432413964
  135. >Lamprey 230607 2LHB >Pig 809283 2PGH
  136. 0.3747989553658288
  137. >Lamprey 230607 2LHB >Deer 229975 1HDS
  138. 0.37814036043696553
  139. >Lamprey 230607 2LHB >Spider-Monkey 122567
  140. 0.3707688590715726
  141. >Lamprey 230607 2LHB >Cow 576143 1HDA
  142. 0.42540790549158625
  143. >Lamprey 230607 2LHB >Lamprey 230607 2LHB
  144. 0.9999999999999998
  145. >Lamprey 230607 2LHB >Horse 230633 2MHB
  146. 0.3085719883397156
  147. >Lamprey 230607 2LHB >Gorilla 232230
  148. 0.39009024238672074
  149. >Lamprey 230607 2LHB >Sea-Cucumber 576151 1HLB
  150. 0.36857779375331784
  151. >Lamprey 230607 2LHB >Rockcod 1065040 1HBH
  152. 0.4206036814503017
  153. >Lamprey 230607 2LHB >Trout 1942655 1OUT
  154. 0.42336562396869026
  155. >Lamprey 230607 2LHB >Human 2144721 HBHU 4HHB
  156. 0.37400404682438176
  157. >Horse 230633 2MHB >Gull 122618
  158. 0.6854732321821179
  159. >Horse 230633 2MHB >Pig 809283 2PGH
  160. 0.8245975795442744
  161. >Horse 230633 2MHB >Deer 229975 1HDS
  162. 0.7391156897563349
  163. >Horse 230633 2MHB >Spider-Monkey 122567
  164. 0.8567769972825875
  165. >Horse 230633 2MHB >Cow 576143 1HDA
  166. 0.8138135520189432
  167. >Horse 230633 2MHB >Lamprey 230607 2LHB
  168. 0.3085719883397156
  169. >Horse 230633 2MHB >Horse 230633 2MHB
  170. 1.0
  171. >Horse 230633 2MHB >Gorilla 232230
  172. 0.830876488334487
  173. >Horse 230633 2MHB >Sea-Cucumber 576151 1HLB
  174. 0.38765470967707016
  175. >Horse 230633 2MHB >Rockcod 1065040 1HBH
  176. 0.5280000181628604
  177. >Horse 230633 2MHB >Trout 1942655 1OUT
  178. 0.5659977711159995
  179. >Horse 230633 2MHB >Human 2144721 HBHU 4HHB
  180. 0.8389042804923081
  181. >Gorilla 232230 >Gull 122618
  182. 0.6792289676832165
  183. >Gorilla 232230 >Pig 809283 2PGH
  184. 0.8365199321155126
  185. >Gorilla 232230 >Deer 229975 1HDS
  186. 0.7511990323610656
  187. >Gorilla 232230 >Spider-Monkey 122567
  188. 0.9384309898351689
  189. >Gorilla 232230 >Cow 576143 1HDA
  190. 0.8342044503015148
  191. >Gorilla 232230 >Lamprey 230607 2LHB
  192. 0.39009024238672074
  193. >Gorilla 232230 >Horse 230633 2MHB
  194. 0.830876488334487
  195. >Gorilla 232230 >Gorilla 232230
  196. 1.0000000000000002
  197. >Gorilla 232230 >Sea-Cucumber 576151 1HLB
  198. 0.39670207033482635
  199. >Gorilla 232230 >Rockcod 1065040 1HBH
  200. 0.5573856842755451
  201. >Gorilla 232230 >Trout 1942655 1OUT
  202. 0.5934057362293618
  203. >Gorilla 232230 >Human 2144721 HBHU 4HHB
  204. 0.9915254237288137
  205. >Sea-Cucumber 576151 1HLB >Gull 122618
  206. 0.44624956420962275
  207. >Sea-Cucumber 576151 1HLB >Pig 809283 2PGH
  208. 0.4059145943555934
  209. >Sea-Cucumber 576151 1HLB >Deer 229975 1HDS
  210. 0.41718576517164246
  211. >Sea-Cucumber 576151 1HLB >Spider-Monkey 122567
  212. 0.4142839674350902
  213. >Sea-Cucumber 576151 1HLB >Cow 576143 1HDA
  214. 0.39673548256518937
  215. >Sea-Cucumber 576151 1HLB >Lamprey 230607 2LHB
  216. 0.36857779375331784
  217. >Sea-Cucumber 576151 1HLB >Horse 230633 2MHB
  218. 0.38765470967707016
  219. >Sea-Cucumber 576151 1HLB >Gorilla 232230
  220. 0.39670207033482635
  221. >Sea-Cucumber 576151 1HLB >Sea-Cucumber 576151 1HLB
  222. 1.0
  223. >Sea-Cucumber 576151 1HLB >Rockcod 1065040 1HBH
  224. 0.33768370769712824
  225. >Sea-Cucumber 576151 1HLB >Trout 1942655 1OUT
  226. 0.3831423934492202
  227. >Sea-Cucumber 576151 1HLB >Human 2144721 HBHU 4HHB
  228. 0.39670207033482635
  229. >Rockcod 1065040 1HBH >Gull 122618
  230. 0.5696127639740152
  231. >Rockcod 1065040 1HBH >Pig 809283 2PGH
  232. 0.5585703523160997
  233. >Rockcod 1065040 1HBH >Deer 229975 1HDS
  234. 0.5369893512711303
  235. >Rockcod 1065040 1HBH >Spider-Monkey 122567
  236. 0.5356781247621613
  237. >Rockcod 1065040 1HBH >Cow 576143 1HDA
  238. 0.5504140850529087
  239. >Rockcod 1065040 1HBH >Lamprey 230607 2LHB
  240. 0.4206036814503017
  241. >Rockcod 1065040 1HBH >Horse 230633 2MHB
  242. 0.5280000181628604
  243. >Rockcod 1065040 1HBH >Gorilla 232230
  244. 0.5573856842755451
  245. >Rockcod 1065040 1HBH >Sea-Cucumber 576151 1HLB
  246. 0.33768370769712824
  247. >Rockcod 1065040 1HBH >Rockcod 1065040 1HBH
  248. 1.0000000000000002
  249. >Rockcod 1065040 1HBH >Trout 1942655 1OUT
  250. 0.591284533107929
  251. >Rockcod 1065040 1HBH >Human 2144721 HBHU 4HHB
  252. 0.5436794789245072
  253. >Trout 1942655 1OUT >Gull 122618
  254. 0.5745466646330636
  255. >Trout 1942655 1OUT >Pig 809283 2PGH
  256. 0.5331496894603106
  257. >Trout 1942655 1OUT >Deer 229975 1HDS
  258. 0.5371270005300569
  259. >Trout 1942655 1OUT >Spider-Monkey 122567
  260. 0.5577565982046326
  261. >Trout 1942655 1OUT >Cow 576143 1HDA
  262. 0.5812195154989421
  263. >Trout 1942655 1OUT >Lamprey 230607 2LHB
  264. 0.42336562396869026
  265. >Trout 1942655 1OUT >Horse 230633 2MHB
  266. 0.5659977711159995
  267. >Trout 1942655 1OUT >Gorilla 232230
  268. 0.5934057362293618
  269. >Trout 1942655 1OUT >Sea-Cucumber 576151 1HLB
  270. 0.3831423934492202
  271. >Trout 1942655 1OUT >Rockcod 1065040 1HBH
  272. 0.591284533107929
  273. >Trout 1942655 1OUT >Trout 1942655 1OUT
  274. 1.0
  275. >Trout 1942655 1OUT >Human 2144721 HBHU 4HHB
  276. 0.5934057362293618
  277. >Human 2144721 HBHU 4HHB >Gull 122618
  278. 0.6836683727007539
  279. >Human 2144721 HBHU 4HHB >Pig 809283 2PGH
  280. 0.8492588143304697
  281. >Human 2144721 HBHU 4HHB >Deer 229975 1HDS
  282. 0.7594995741551105
  283. >Human 2144721 HBHU 4HHB >Spider-Monkey 122567
  284. 0.9469235779784737
  285. >Human 2144721 HBHU 4HHB >Cow 576143 1HDA
  286. 0.8259039085074699
  287. >Human 2144721 HBHU 4HHB >Lamprey 230607 2LHB
  288. 0.37400404682438176
  289. >Human 2144721 HBHU 4HHB >Horse 230633 2MHB
  290. 0.8389042804923081
  291. >Human 2144721 HBHU 4HHB >Gorilla 232230
  292. 0.9915254237288137
  293. >Human 2144721 HBHU 4HHB >Sea-Cucumber 576151 1HLB
  294. 0.39670207033482635
  295. >Human 2144721 HBHU 4HHB >Rockcod 1065040 1HBH
  296. 0.5436794789245072
  297. >Human 2144721 HBHU 4HHB >Trout 1942655 1OUT
  298. 0.5934057362293618
  299. >Human 2144721 HBHU 4HHB >Human 2144721 HBHU 4HHB
  300. 1.0000000000000002
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