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jlfriedrice

error

May 10th, 2017
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  1. Saving local copy of registered brain...
  2. Completed CLAHE!
  3. 1214.232
  4. (This will take couple minutes)
  5. Above threshold=437072866
  6. total points: 437072866
  7. v.shape:
  8. (437072866,)
  9. v.size before downsample: 437072866
  10. v.size after downsample: 9972
  11. Output num points: 9972
  12. Finished
  13. Getting regions...
  14. ** ERROR: NWAD: wrote only 181866144 of 520392704 bytes to file
  15. File "/usr/local/lib/python2.7/dist-packages/clarityviz/analysis.py", line 471, in get_regions
  16. Traceback (most recent call last):
  17. File "execute.py", line 27, in <module>
  18. clv.analysis.run_pipeline(token, 5)
  19. File "/usr/local/lib/python2.7/dist-packages/clarityviz/analysis.py", line 383, in run_pipeline
  20. get_regions(points_path, "atlas/ara3_annotation.nii", "points/" + token + "_regions.csv");
  21. Getting registered brain from server...
  22. atlas_data = atlas.get_data()
  23. File "/usr/local/lib/python2.7/dist-packages/nibabel/spatialimages.py", line 572, in get_data
  24. data = np.asanyarray(self._dataobj)
  25. File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 533, in asanyarray
  26. raw_data = self.get_unscaled()
  27. File "/usr/local/lib/python2.7/dist-packages/nibabel/arrayproxy.py", line 145, in __array__
  28. return array(a, dtype, copy=False, order=order, subok=True)
  29. File "/usr/local/lib/python2.7/dist-packages/nibabel/arrayproxy.py", line 140, in get_unscaled
  30. mmap=self._mmap)
  31. File "/usr/local/lib/python2.7/dist-packages/nibabel/volumeutils.py", line 535, in array_from_file
  32. getattr(infile, 'name', 'object')))
  33. IOError: Expected 4815360000 bytes, got 181866144 bytes from atlas/ara3_annotation.nii
  34. - could the file be damaged?
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