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- Saving local copy of registered brain...
- Completed CLAHE!
- 1214.232
- (This will take couple minutes)
- Above threshold=437072866
- total points: 437072866
- v.shape:
- (437072866,)
- v.size before downsample: 437072866
- v.size after downsample: 9972
- Output num points: 9972
- Finished
- Getting regions...
- ** ERROR: NWAD: wrote only 181866144 of 520392704 bytes to file
- File "/usr/local/lib/python2.7/dist-packages/clarityviz/analysis.py", line 471, in get_regions
- Traceback (most recent call last):
- File "execute.py", line 27, in <module>
- clv.analysis.run_pipeline(token, 5)
- File "/usr/local/lib/python2.7/dist-packages/clarityviz/analysis.py", line 383, in run_pipeline
- get_regions(points_path, "atlas/ara3_annotation.nii", "points/" + token + "_regions.csv");
- Getting registered brain from server...
- atlas_data = atlas.get_data()
- File "/usr/local/lib/python2.7/dist-packages/nibabel/spatialimages.py", line 572, in get_data
- data = np.asanyarray(self._dataobj)
- File "/usr/lib/python2.7/dist-packages/numpy/core/numeric.py", line 533, in asanyarray
- raw_data = self.get_unscaled()
- File "/usr/local/lib/python2.7/dist-packages/nibabel/arrayproxy.py", line 145, in __array__
- return array(a, dtype, copy=False, order=order, subok=True)
- File "/usr/local/lib/python2.7/dist-packages/nibabel/arrayproxy.py", line 140, in get_unscaled
- mmap=self._mmap)
- File "/usr/local/lib/python2.7/dist-packages/nibabel/volumeutils.py", line 535, in array_from_file
- getattr(infile, 'name', 'object')))
- IOError: Expected 4815360000 bytes, got 181866144 bytes from atlas/ara3_annotation.nii
- - could the file be damaged?
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