New Code

package thegame;

import java.util.*;
import java.math.*;
import javax.swing.*;
import javafx.application.Application;
import javafx.geometry.Insets;
import javafx.geometry.Pos;
import javafx.scene.Scene;
import javafx.scene.control.Button;
import javafx.scene.control.Label;
import javafx.scene.control.TextField;
import javafx.scene.image.Image;
import javafx.scene.image.ImageView;
import javafx.scene.layout.GridPane;
import javafx.scene.layout.VBox;
import javafx.scene.text.Font;
import javafx.scene.text.TextAlignment;
import javafx.stage.Modality;
import javafx.stage.Stage;


public class TheGame extends Application {
 Font chillerFont = new Font("Chiller", 22);
 Stage window;
    public static void main(String[] args) {
    launch(args);
    TheGame bob = new TheGame();
    bob.StartUp();

    }

    @Override
    public void start(Stage primaryStage) throws Exception {
        window = primaryStage;
        window.setTitle("GridPanes");

        //GridPane with 10px padding around edge
        GridPane grid = new GridPane();
        grid.setPadding(new Insets(10, 10, 10, 10));
        grid.setVgap(8);
        grid.setHgap(10);

        //Name Label - constrains use (child, column, row)
        Label nameLabel = new Label("Username:");
        GridPane.setConstraints(nameLabel, 1, 0);

        //Name Input
        TextField nameInput = new TextField("Jamesus");
        GridPane.setConstraints(nameInput, 2, 0);

        //Password Label
        Label passLabel = new Label("Password:");
        GridPane.setConstraints(passLabel, 1, 1);

        //Password Input
        TextField passInput = new TextField();
        passInput.setPromptText("password");
        GridPane.setConstraints(passInput, 2, 1);

        //Login
        Button loginButton = new Button("Log In");
        GridPane.setConstraints(loginButton, 1, 2);

        Image Img = new Image("file:Vampire.png");
        ImageView Vampire = new ImageView(Img);
        Vampire.setFitWidth(300);
        Vampire.setFitHeight(250);
        //GridPane.getChildren().add(new ImageView(image));

        //Add everything to grid
        grid.getChildren().addAll(nameLabel, nameInput, passLabel, passInput, loginButton, Vampire);

        Scene scene = new Scene(grid, 650, 500);
        window.setScene(scene);
        window.show();
        Start();
    }

    protected Object[][][] Start() {
        Character Caller = new Character();
        Object[][][] Dude = Caller.OurGuy();
        Stage Window = new Stage();
        Window.initModality(Modality.APPLICATION_MODAL);
        Window.setTitle("Character Creation");

        Label Label = new Label();
        Label.setText("Fill out the options with what you want to carry throughout the game");

        Button YesButton = new Button("Done");

        TextField NameInput = new TextField("Your Name");
        TextField CharInput = new TextField("Character's Name");

        YesButton.setOnAction(e -> {
            Window.close();
        });

        VBox Layout = new VBox(10);
        Layout.getChildren().addAll(Label, YesButton, NameInput, CharInput);
        Layout.setAlignment(Pos.CENTER);

        Scene Scene = new Scene(Layout, 300, 250);
        Window.setScene(Scene);
        Window.showAndWait();

        return Dude;
    }

    protected void StartUp() {
        //very easy
    TheGame bob = new TheGame();
    for(int a = 0 ; a < 2 ; a++)
        {
        bob.Welcome();
        bob.CharCreation();
        bob.Travel();
        }
    }

    protected void CharCreation() {
        //very easy
    String Name = JOptionPane.showInputDialog("What is your name?");

    }

    protected void Welcome() {
        //very easy
        //Vampires S U C C
        //Welcome to Vampires S U C C, your goal is to survive long enough to travel
        //to the CDC in Georgia to escape the Vampire apocalypse.
        //References this method only once per playthrough

        Stage welcomeStage = new Stage();
        welcomeStage.setTitle("Welcome to Vampires S U C C");
        Label introText = new Label("Welcome to Vampires S U C C, your goal,"
                + " is to survive long\nenough to travel to the CDC in Georgia to,"
                + " escape the\nVampire apocalypse. ");
        introText.setPrefWidth(300);

        VBox welcomeVBox = new VBox();
        welcomeVBox.setAlignment(Pos.CENTER);
        welcomeVBox.getChildren().add(introText);

        Scene welcomeScene = new Scene(welcomeVBox, 650, 500);
        welcomeStage.setScene(welcomeScene);
        welcomeStage.show();
    }

    protected void Story() {
        //very easy
    JOptionPane.showMessageDialog(null,"Vampires are everywhere and you are alone. You may been immune to the virus that caused them to \n"+
            "roam the Earth but you are not indestructable. Surviving long enough to reach the CDC in Georgia. Buy, sell, and find \n"+
            "items to increase your chances of survival. Encounter bosses and fight your way through lairs to continue on the long road to safety. \n"+
            "Good luck traveler...");
    }

    protected void LevelUp(Object Dude[][][]) {
    Stage lvlupStage = new Stage();
    lvlupStage.setTitle("Vampires S U C C");
    Button Vitality = new Button("Vitality");
    Button Strength = new Button("Strength");
    Button Recovery = new Button("Recovery");
    Button Speed = new Button("Speed");
    Button Resistance = new Button("Resistance");
    Button Defense = new Button("Defense");
    //Adds 1 point to the level attribute in the dude array
    Dude[0][0][1] = + 1;
    JFrame frame = new JFrame("Vampires S U C C");
    Object[] options = {"Vitality", "Strength", "Recovery", "Speed", "Resistance", "Defense"};
    int n = JOptionPane.showOptionDialog(frame,
    "Choose the attribute to level up!",
    "Vampires S U C C",
    JOptionPane.YES_NO_CANCEL_OPTION,
    JOptionPane.QUESTION_MESSAGE,
    null,
    options,
    options[5]);
    //Adds one point to the selected attribute in the dude array. Adds 2 to
    //compensate for array positioning
    Dude[0][0][n + 2] = + 1;
    }

    protected void Travel(){
    TheGame bob = new TheGame();
    JFrame frame = new JFrame("Vampires S U C C");
    Object[] options = {"Travel", "Story"};
    int n = JOptionPane.showOptionDialog(frame,
    "Which Direction would you like to move ",
    "Vampires S U C C",
    JOptionPane.YES_NO_CANCEL_OPTION,
    JOptionPane.QUESTION_MESSAGE,
    null,
    options,
    options[1]);
    if(n == 0)
        {

        }
    else
        {
        if(n == 1)
            {
            bob.Story();
            }
        }
    }

    protected void Lair1() {
        //intermediate
    int n = JOptionPane.showConfirmDialog(null, "Would you like to enter the lair?", "", JOptionPane.YES_NO_OPTION);
    if(true)
        {
        JOptionPane.showMessageDialog(null, "Interesting choice traveler...");
        }
    else
        {
        JOptionPane.showMessageDialog(null, "Interesting choice traveler...");
        }
    }
}

class TheFight {

    //all of these are fairly difficult, but also a little bit copy paste once the first is done.

    //add vampire kill to value to determine levelup ex. 5 kills = level 2  10 kills = level 3

    //single encounter for multiple random references?
    protected void Encounter1() {

    }

    protected void Encounter2() {

    }

    protected void Encounter3() {

    }

    protected void Encounter4() {

    }

    protected void Encounter5() {

    }

    protected void Encounter6() {

    }

    protected void Encounter7() {

    }

    protected void Encounter8() {

    }

    protected void Encounter9() {

    }

    protected void Encounter10() {
        //boss fight
    }
}

class Character {

    //literal brain torture
    protected Object[][][] OurGuy() {
        Object[][][] Dude = {
            /*
            NM = Name
            LVL = Level
            VIT = Vitality/HP
            ATK = Attack
            REC = Recovery/Passive health regen
            AGI = Speed/Agility
            STR = Strength
            SPD = Speed
            EFF = Effect
            DEF = Defense
             */
            {//  NM LVL  VIT  STR  REC  SPD  RES  DEF


                {"", 0, 50.0, 5.0, 3.0, 1.0,  0,  0.0},},
            //inventory, 10 slots
            { //          NAME          DMG    SPD    EFT
                {"S U C C Broadsword" ,   9,    70},  //8 hits
                {"Pointy Stick"       ,  11,    65},  //6 hits
                {"Stabby Sword"       ,  20,    50},  //4 hits
                {"Bowstaff"           ,  15,    55},  //5 hits
                {"Sai"                ,  33,    26},  //2 hits
                {"Slim Broadsword"    ,  18,    38},  //4 hits
                {"Nunchucks"          ,  12,    60},  //6 hits
                {"Battle Axe"         ,  25,    45},
                {"Baseball Bat"       ,   7,    90},
                {"Katana"             ,  20,    65},
                {"Frying Pan"         ,   8,    70},
                {"Homemade Wristblade",  15,    70},
                {"Stake Launcher"     ,  37,    50},
                {"Hatchet"            ,  20,    65},
                {},
                {}
            }
        };
        return Dude;
    }
}

interface Required{
public String Name();
public double Health();
public boolean HasAbility();
public String Ability();
public boolean ToHero();
//if true that means it hits the hero, if false it hits both
public double AbilityEffToHP();

}