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  1. /home/ubuntu/AdmixTools-master/bin/qpAdm: parameter file: qpAdm_parfile
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: /home/ubuntu/MainSet/robertDataset2.ind
  5. snpname: /home/ubuntu/MainSet/robertDataset.snp
  6. genotypename: /home/ubuntu/MainSet/robertDataset.packedancestrymapgeno
  7. popleft: /home/ubuntu/pLeft.tx
  8. popright: /home//ubuntu/pRightC
  9. allsnps: YES
  10. ## qpAdm version: 1201
  11. seed: -244791504
  12. read 1073741824 bytes
  13. read 2147483648 bytes
  14. read 3213231878 bytes
  15. packed geno read OK
  16. end of inpack
  17.  
  18. left pops:
  19. Russia_Steppe_Eneolithic1
  20. Satsurblia_HG
  21. Russia_EHG
  22. AfontovaGora3
  23.  
  24. right pops:
  25. Ethiopia_4500BP
  26. Morocco_Iberomaurusian
  27. Anzick
  28. Kostenki14
  29. Vestonice
  30. MA1
  31. Tianyuan
  32. DevilsCave_N
  33. Loschbour
  34. Jordan_Late_PPNB
  35. Turkey_TepecikCiftlik_N.SG
  36. WSHG1
  37. Pinarbasi
  38.  
  39. 0 Russia_Steppe_Eneolithic1 2
  40. 1 Satsurblia_HG 1
  41. 2 Russia_EHG 1
  42. 3 AfontovaGora3 1
  43. 4 Ethiopia_4500BP 1
  44. 5 Morocco_Iberomaurusian 6
  45. 6 Anzick 1
  46. 7 Kostenki14 1
  47. 8 Vestonice 4
  48. 9 MA1 1
  49. 10 Tianyuan 1
  50. 11 DevilsCave_N 5
  51. 12 Loschbour 1
  52. 13 Jordan_Late_PPNB 1
  53. 14 Turkey_TepecikCiftlik_N.SG 3
  54. 15 WSHG1 1
  55. 16 Pinarbasi 1
  56. jackknife block size: 0.050
  57. snps: 1150438 indivs: 32
  58. number of blocks for block jackknife: 714
  59. ## ncols: 1150438
  60. coverage: Russia_Steppe_Eneolithic1 967425
  61. coverage: Satsurblia_HG 801311
  62. coverage: Russia_EHG 532960
  63. coverage: AfontovaGora3 265583
  64. coverage: Ethiopia_4500BP 1149598
  65. coverage: Morocco_Iberomaurusian 1101342
  66. coverage: Anzick 1139074
  67. coverage: Kostenki14 1048972
  68. coverage: Vestonice 762847
  69. coverage: MA1 805960
  70. coverage: Tianyuan 885079
  71. coverage: DevilsCave_N 1149739
  72. coverage: Loschbour 1062011
  73. coverage: Jordan_Late_PPNB 440642
  74. coverage: Turkey_TepecikCiftlik_N.SG 794097
  75. coverage: WSHG1 805417
  76. coverage: Pinarbasi 848431
  77. Effective number of blocks: 617.183
  78. numsnps used: 1150438
  79. codimension 1
  80. f4info:
  81. f4rank: 2 dof: 10 chisq: 17.359 tail: 0.0667806682 dofdiff: 12 chisqdiff: -17.359 taildiff: 1
  82. B:
  83. scale 1.000 1.000
  84. Morocco_Iberomaurusian 0.123 0.384
  85. Anzick 1.194 -0.449
  86. Kostenki14 0.409 0.426
  87. Vestonice 0.731 0.987
  88. MA1 1.649 -1.632
  89. Tianyuan 0.623 0.198
  90. DevilsCave_N 0.422 0.269
  91. Loschbour 0.862 2.166
  92. Jordan_Late_PPNB -0.062 1.011
  93. Turkey_TepecikCiftlik_N.SG -0.338 0.474
  94. WSHG1 2.390 -0.836
  95. Pinarbasi 0.027 1.042
  96. A:
  97. scale 500.921 1766.587
  98. Satsurblia_HG -1.177 -0.505
  99. Russia_EHG 1.054 0.783
  100. AfontovaGora3 0.709 -1.460
  101.  
  102.  
  103. full rank
  104. f4info:
  105. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 17.359 taildiff: 0.0667806682
  106. B:
  107. scale 376.357 554.983 577.814
  108. Morocco_Iberomaurusian -0.231 0.115 -0.160
  109. Anzick -1.206 1.057 1.121
  110. Kostenki14 -0.513 0.468 0.061
  111. Vestonice -0.876 0.890 0.055
  112. MA1 -1.483 1.263 2.025
  113. Tianyuan -0.703 0.612 0.314
  114. DevilsCave_N -0.546 0.419 0.157
  115. Loschbour -1.086 1.394 -0.373
  116. Jordan_Late_PPNB -0.366 -0.312 -0.775
  117. Turkey_TepecikCiftlik_N.SG -0.058 -0.682 -0.632
  118. WSHG1 -2.247 2.282 2.241
  119. Pinarbasi -0.322 -0.005 -0.575
  120. A:
  121. scale 1.732 1.732 1.732
  122. Satsurblia_HG 1.732 0.000 0.000
  123. Russia_EHG 0.000 1.732 0.000
  124. AfontovaGora3 0.000 0.000 1.732
  125.  
  126.  
  127. best coefficients: 0.459 0.455 0.085
  128. Jackknife mean: 0.458967645 0.452299528 0.088732826
  129. std. errors: 0.024 0.082 0.083
  130.  
  131. error covariance (* 1,000,000)
  132. 593 -187 -407
  133. -187 6738 -6551
  134. -407 -6551 6958
  135.  
  136.  
  137. summ: Russia_Steppe_Eneolithic1 3 0.066781 0.459 0.452 0.089 593 -187 -407 6738 -6551 ...
  138. 6958
  139.  
  140. fixed pat wt dof chisq tail prob
  141. 000 0 10 17.359 0.0667807 0.459 0.455 0.085
  142. 001 1 11 19.099 0.0593447 0.467 0.533 0.000
  143. 010 1 11 69.363 1.61435e-10 0.496 0.000 0.504
  144. 100 1 11 115.475 1.46995e-19 0.000 4.779 -3.779 infeasible
  145. 011 2 12 295.989 0 1.000 0.000 0.000
  146. 101 2 12 233.555 0 0.000 1.000 0.000
  147. 110 2 12 596.204 0 0.000 0.000 1.000
  148. best pat: 000 0.0667807 - -
  149. best pat: 001 0.0593447 chi(nested): 1.739 p-value for nested model: 0.187224
  150. best pat: 101 3.63637e-43 chi(nested): 214.456 p-value for nested model: 1.4646e-48
  151.  
  152. coeffs: 0.459 0.455 0.085
  153.  
  154. ## dscore:: f_4(Base, Fit, Rbase, right2)
  155. ## genstat:: f_4(Base, Fit, right1, right2)
  156.  
  157. details: Satsurblia_HG Morocco_Iberomaurusian -0.000613 -1.669496
  158. details: Russia_EHG Morocco_Iberomaurusian 0.000208 0.678277
  159. details: AfontovaGora3 Morocco_Iberomaurusian -0.000277 -1.278369
  160. dscore: Morocco_Iberomaurusian f4: -0.000210 Z: -0.835270
  161.  
  162. details: Satsurblia_HG Anzick -0.003206 -7.133355
  163. details: Russia_EHG Anzick 0.001905 5.251415
  164. details: AfontovaGora3 Anzick 0.001939 8.348850
  165. dscore: Anzick f4: -0.000439 Z: -1.443606
  166.  
  167. details: Satsurblia_HG Kostenki14 -0.001362 -3.332795
  168. details: Russia_EHG Kostenki14 0.000844 2.435097
  169. details: AfontovaGora3 Kostenki14 0.000106 0.475841
  170. dscore: Kostenki14 f4: -0.000232 Z: -0.822960
  171.  
  172. details: Satsurblia_HG Vestonice -0.002327 -5.947294
  173. details: Russia_EHG Vestonice 0.001603 4.246387
  174. details: AfontovaGora3 Vestonice 0.000096 0.356898
  175. dscore: Vestonice f4: -0.000330 Z: -1.163529
  176.  
  177. details: Satsurblia_HG MA1 -0.003940 -9.459141
  178. details: Russia_EHG MA1 0.002276 6.227861
  179. details: AfontovaGora3 MA1 0.003504 13.343532
  180. dscore: MA1 f4: -0.000473 Z: -1.634963
  181.  
  182. details: Satsurblia_HG Tianyuan -0.001869 -4.634924
  183. details: Russia_EHG Tianyuan 0.001102 2.929370
  184. details: AfontovaGora3 Tianyuan 0.000543 2.192664
  185. dscore: Tianyuan f4: -0.000310 Z: -1.076008
  186.  
  187. details: Satsurblia_HG DevilsCave_N -0.001452 -3.745696
  188. details: Russia_EHG DevilsCave_N 0.000755 2.373519
  189. details: AfontovaGora3 DevilsCave_N 0.000272 1.283934
  190. dscore: DevilsCave_N f4: -0.000299 Z: -1.136329
  191.  
  192. details: Satsurblia_HG Loschbour -0.002886 -6.630267
  193. details: Russia_EHG Loschbour 0.002511 6.501236
  194. details: AfontovaGora3 Loschbour -0.000646 -2.706703
  195. dscore: Loschbour f4: -0.000236 Z: -0.771721
  196.  
  197. details: Satsurblia_HG Jordan_Late_PPNB -0.000973 -2.909001
  198. details: Russia_EHG Jordan_Late_PPNB -0.000563 -1.573407
  199. details: AfontovaGora3 Jordan_Late_PPNB -0.001340 -4.515278
  200. dscore: Jordan_Late_PPNB f4: -0.000818 Z: -3.059529
  201.  
  202. details: Satsurblia_HG Turkey_TepecikCiftlik_N.SG -0.000154 -0.455741
  203. details: Russia_EHG Turkey_TepecikCiftlik_N.SG -0.001228 -3.957064
  204. details: AfontovaGora3 Turkey_TepecikCiftlik_N.SG -0.001094 -5.030140
  205. dscore: Turkey_TepecikCiftlik_N.SG f4: -0.000723 Z: -3.072479
  206.  
  207. details: Satsurblia_HG WSHG1 -0.005971 -14.141160
  208. details: Russia_EHG WSHG1 0.004112 8.922071
  209. details: AfontovaGora3 WSHG1 0.003878 12.799867
  210. dscore: WSHG1 f4: -0.000537 Z: -1.628134
  211.  
  212. details: Satsurblia_HG Pinarbasi -0.000856 -2.154192
  213. details: Russia_EHG Pinarbasi -0.000009 -0.024349
  214. details: AfontovaGora3 Pinarbasi -0.000995 -4.030457
  215. dscore: Pinarbasi f4: -0.000482 Z: -1.688570
  216.  
  217. gendstat: Ethiopia_4500BP Morocco_Iberomaurusian -0.835
  218. gendstat: Ethiopia_4500BP Anzick -1.444
  219. gendstat: Ethiopia_4500BP Kostenki14 -0.823
  220. gendstat: Ethiopia_4500BP Vestonice -1.164
  221. gendstat: Ethiopia_4500BP MA1 -1.635
  222. gendstat: Ethiopia_4500BP Tianyuan -1.076
  223. gendstat: Ethiopia_4500BP DevilsCave_N -1.136
  224. gendstat: Ethiopia_4500BP Loschbour -0.772
  225. gendstat: Ethiopia_4500BP Jordan_Late_PPNB -3.060
  226. gendstat: Ethiopia_4500BP Turkey_TepecikCiftlik_N.SG -3.072
  227. gendstat: Ethiopia_4500BP WSHG1 -1.628
  228. gendstat: Ethiopia_4500BP Pinarbasi -1.689
  229. gendstat: Morocco_Iberomaurusian Anzick -0.821
  230. gendstat: Morocco_Iberomaurusian Kostenki14 -0.080
  231. gendstat: Morocco_Iberomaurusian Vestonice -0.443
  232. gendstat: Morocco_Iberomaurusian MA1 -0.901
  233. gendstat: Morocco_Iberomaurusian Tianyuan -0.355
  234. gendstat: Morocco_Iberomaurusian DevilsCave_N -0.379
  235. gendstat: Morocco_Iberomaurusian Loschbour -0.089
  236. gendstat: Morocco_Iberomaurusian Jordan_Late_PPNB -2.217
  237. gendstat: Morocco_Iberomaurusian Turkey_TepecikCiftlik_N.SG -2.120
  238. gendstat: Morocco_Iberomaurusian WSHG1 -1.034
  239. gendstat: Morocco_Iberomaurusian Pinarbasi -0.979
  240. gendstat: Anzick Kostenki14 0.684
  241. gendstat: Anzick Vestonice 0.362
  242. gendstat: Anzick MA1 -0.113
  243. gendstat: Anzick Tianyuan 0.413
  244. gendstat: Anzick DevilsCave_N 0.538
  245. gendstat: Anzick Loschbour 0.602
  246. gendstat: Anzick Jordan_Late_PPNB -1.151
  247. gendstat: Anzick Turkey_TepecikCiftlik_N.SG -0.994
  248. gendstat: Anzick WSHG1 -0.320
  249. gendstat: Anzick Pinarbasi -0.141
  250. gendstat: Kostenki14 Vestonice -0.350
  251. gendstat: Kostenki14 MA1 -0.818
  252. gendstat: Kostenki14 Tianyuan -0.255
  253. gendstat: Kostenki14 DevilsCave_N -0.252
  254. gendstat: Kostenki14 Loschbour -0.014
  255. gendstat: Kostenki14 Jordan_Late_PPNB -1.893
  256. gendstat: Kostenki14 Turkey_TepecikCiftlik_N.SG -1.763
  257. gendstat: Kostenki14 WSHG1 -0.924
  258. gendstat: Kostenki14 Pinarbasi -0.835
  259. gendstat: Vestonice MA1 -0.474
  260. gendstat: Vestonice Tianyuan 0.066
  261. gendstat: Vestonice DevilsCave_N 0.113
  262. gendstat: Vestonice Loschbour 0.307
  263. gendstat: Vestonice Jordan_Late_PPNB -1.556
  264. gendstat: Vestonice Turkey_TepecikCiftlik_N.SG -1.418
  265. gendstat: Vestonice WSHG1 -0.637
  266. gendstat: Vestonice Pinarbasi -0.526
  267. gendstat: MA1 Tianyuan 0.518
  268. gendstat: MA1 DevilsCave_N 0.606
  269. gendstat: MA1 Loschbour 0.698
  270. gendstat: MA1 Jordan_Late_PPNB -1.064
  271. gendstat: MA1 Turkey_TepecikCiftlik_N.SG -0.838
  272. gendstat: MA1 WSHG1 -0.209
  273. gendstat: MA1 Pinarbasi -0.028
  274. gendstat: Tianyuan DevilsCave_N 0.039
  275. gendstat: Tianyuan Loschbour 0.222
  276. gendstat: Tianyuan Jordan_Late_PPNB -1.555
  277. gendstat: Tianyuan Turkey_TepecikCiftlik_N.SG -1.416
  278. gendstat: Tianyuan WSHG1 -0.689
  279. gendstat: Tianyuan Pinarbasi -0.545
  280. gendstat: DevilsCave_N Loschbour 0.207
  281. gendstat: DevilsCave_N Jordan_Late_PPNB -1.871
  282. gendstat: DevilsCave_N Turkey_TepecikCiftlik_N.SG -1.719
  283. gendstat: DevilsCave_N WSHG1 -0.809
  284. gendstat: DevilsCave_N Pinarbasi -0.618
  285. gendstat: Loschbour Jordan_Late_PPNB -1.745
  286. gendstat: Loschbour Turkey_TepecikCiftlik_N.SG -1.699
  287. gendstat: Loschbour WSHG1 -0.841
  288. gendstat: Loschbour Pinarbasi -0.801
  289. gendstat: Jordan_Late_PPNB Turkey_TepecikCiftlik_N.SG 0.353
  290. gendstat: Jordan_Late_PPNB WSHG1 0.796
  291. gendstat: Jordan_Late_PPNB Pinarbasi 1.080
  292. gendstat: Turkey_TepecikCiftlik_N.SG WSHG1 0.588
  293. gendstat: Turkey_TepecikCiftlik_N.SG Pinarbasi 0.931
  294. gendstat: WSHG1 Pinarbasi 0.161
  295.  
  296. ##end of qpAdm: 252.921 seconds cpu 1387.594 Mbytes in use
  297.  
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