All Permanent Flags (FAQ + Route)

All Permanent Flags run (glitchless restricted ruleset)

Quick FAQ:

•What's a permanent flag ? A permanent flag is a "switch" a "lever" a "chest" a "text" etc... that you can set only once in the game. If you are familiar with the term, it is also called a Boolean as it is either activated (1) or desactivated (0). if you set it to 1, you will likely not be able to set it back to 0 (I said "likely" because there are exceptions but we'll keep it simple here). Here are some examples:
-A chest: quite easy to understand, you can only open it once.
-NPCs having multiple textboxes and then you talk to them again and have only one textbox, this is a permanent flag.
-HPs/Gold skulltulas: just like chests you can only get them once.
-Clearing a room in a dungeon often sets a permanent flag.
-Milking the cows is NOT a permanent flag as you can do it infinitely and you don't set any specific flag with the textboxes or anything.
-Shooting the ladder in Deku Tree after slingshot is a TEMPORARY flag as it's set back to 0 after leaving Deku Tree.
•Here is a list of most permanent flags in the game made by Ecksters and TCRF (non exhaustive): https://docs.google.com/spreadsheets/d/1CyaDpxY2lMq3_j6nqI3uzHUt0pl5r36kzpOv069d_Ms/edit#gid=801321899 (tcrf means The Cutting Room Floor)

•What is a temporary flag ? A temporary flag can be set just like a permanent flag. It is hard to make the difference between them sometimes, especially if you don't look at the memory of the game. The big difference is that they naturally unset when you leave the area they are attached to. Examples:
-Play Zelda's Lullaby to enter Boss key room in Spirit Temple (you have to play it again to enter the room if you leave Spirit Temple).
-The stairs you have to blow up in Dodongo's Cavern
-Most drops in the pots in dungeons
•Here is a sheet I made with the temporary flags in the game (non exhaustive): https://docs.google.com/spreadsheets/d/1i9Fsy1osyfw2Wf0PAjol7f2fWXfvW7l4yaHvS7N0LeM/edit#gid=0 it's a bit old though.

•Why Glitchless ? This category forces you to do many things in the game, you have to enter and clear every room in dungeons/temples. You also have to talk to many NPCs throughout the game (sometimes multiple times after X event happens). I want to keep it simple for people... and also myself. doing glitches will likely make this category a nightmare to route and won't save much time. In addition to that, doing glitches would force me to get even more permanent flags. You might think it's cool to get the 37th HP, sure, but it's less fun to get the 38th one or to wrong warp to beta goron city to open the chests etc... In other words, glitches would actually make the run longer, but also harder. This may be fun but it is just too much of a work for a category that is not even official (yet).

•Why did you activate "this" but not "that" in the run ? Some flags don't make sense, just like the ladder in Deku Tree stated earlier. It totally doesn't make sense that it's a temporary flag. Same for some boulders in the overworld or some drops in dungeons.

So yes, APF is pretty much a Super 100% run. As far as I know, only Makai did a run of it years ago (you can find it here https://www.twitch.tv/videos/56681708?filter=all&sort=time). However it was incomplete, Makai forgot some flags, here they are:
-the big magic jar on the statue in Gerudo training ground.
-Arrow drop from one of the paintings in shadow temple in the room where there are three skull pots.
-The Forest temple wallmaster warning text boxes. (x2)
-recovery Heart lavafall DC
-Blue Rupees BOTW (x5)
-Bronze Rock Hyrule Field
-Recovery hearts Spirit Temple (x2)
-SOT blocks Shadow Temple (x2)
-Blue Rupee boudlder DMT
-Use Ocarina on gossip Stone DC
-Kill a redead in market and wait until it dissapears
-SOT blocks Goron city (x2)
-Talk to Medigoron as child
-Spoke to Talon after saving Ranch
-Spoke to Carpenter Boss's Wife as Child
-Caught by guards (castle or courtyard)
-Talk to mido as child AFTER ZL

In addition to that, Makai went for rules that are a bit different from mine, his rules were "Only activate flags you can confirm after the file is over" (when the  last event of the game is to beat Ganon pretty much). The rules I'll go for are these one:
"Activate every permanent Flags at least once". Again, it says "at least once" because some permanent flags will be unset after some events. Some of them could be re-activated but I've decided to not go for it. Here are some examples:
-A flag is unset when you equip Kokiri Sword
-There's a flag for each cuccos in the pen. Once you talk to Anju (cucco lady) they're all unset. You could theoratically do the cuccos again after the bottle and not talk to Anju so the cuccos will remain in the pen (even after a savewarp).
-The blue switch where you have to push the armos in Spirit Temple's biggest room (before the boss). this flag is set to 1 for ever unless you re-enter the room, which is exactly what happens when you come back in the temple as adult.
-Song of Time Blocks: Sot blocks behave interestingly so I'll cover them now. You first have to know that some SoT blocks are temporary and some are permanent flags (Ice cavern's blocks are temporary, the one in Forest is permanent. In spirit there are 2: one is a temp the other is a perm). It is well known by the runners that SoT blocks are "flipped" between child and adult. Nevertheless they are ALWAYS set to 0 so I will have to play Song of Time no matter if it's to make them appear or dissapear.

•Why this rule specifically ? Why not use Makai's rules or why not let a maximum number of flags activated by the end of the run ? I went for the rule of "activating every permanent flags at least once" because it shows even more cool stuff into the run. Also because this rule fits really well with Majora's Mask and the concept of the 3 Cycles. I guess it's cool if both games have a consistent rule if someone one day ever want to run APF in MM.

Now here's the list of every permanent flags I'll have to add in the run (in addition to the one listed above):

Deku Tree:
-navi web

Jabu:
-navi red tentacle compass
-navi red tentacle (blue one)
-navi blue tentacle (green one)
-navi green tentacle

Spirit Temple:
-Refuse Nabooru's request

Bottom of the Well:
-Kill the gibdo laying in the coffin
(you have to wait for the corpse to dissapear, about 19-20sec)

Hyrule Field:
-owl after ocarina
-HF Owl before lake hylia (disappears after 3 stones)

Kak + graveyard:
-Flat pre-sun
-Sharp pre-sun
-gold skull chief before 10 tokens
-gold skull chief between between 10 to 49 tokens

Castle + Market:
-dying guard back alley
-guard slingshot (zelda)
-rupee mario painting
-fat woman potion shop BEFORE Zelda escape
-green pant guy BEFORE Zelda escape
-old lady near fountain BEFORE Zelda escape
-old man bowling BEFORE Zelda escape
-Lady bowling BEFORE Zelda escape
-Red Twin BEFORE Zelda escape
-Blue Twin BEFORE Zelda escape
-Big beard guy BEFORE Zelda escape AFTER Malon's talk
-Lady shooting gallery BEFORE Zelda escape AFTER malon left

Kokiri forest + LW:
-talk to saria beginning
-talk to saria AFTER mido
-kokiri girl near stepping stone BEFORE Deku
-talk to Fado BEFORE Deku
-Pokey BEFORE Deku
-kokiri boy cutting grass BEFORE Deku
-kokiri girl Z target shop BEFORE Deku
-kokiri girl in front of mido house BEFORE Deku
-talk to saria AFTER Deku BEFORE ZL
-(adult) Right kokiri guy mido house BEFORE Forest
-(adult) kokiri girl saria house BEFORE forest
-(adult) know it all bro right BEFORE Forest
-(adult) know it all bro left BEFORE Forest
-(adult) talk to mido BEFORE saria song

Ranch:
-play epona song to Malon as adult as night BEFORE free epona
-talk to Ingo before waking Talon
-Refuse to pay 50r for Ingo
-Lose Race with normal horse against Ingo

Goron City + DMT:
-Talk Medigoron as adult BEFORE BGS (don't need to buy GK)
-Talk goron above DC BEFORE ruby
-Talk Darunia BEFORE goron bracelet
-talk goron near Darunia AFTER ZL BEFORE bracelet
-Talk Goron near DC BEFORE opening DC
-talk Goron entrance GC BEFORE ruby
-talk Goron near ruby BEFORE ruby
-talk goron near LW BEFORE Darunia
-talk Link Goron AFTER Goron Tunic BEFORE fire
-try to buy bombs BEFORE BB20

Zora Domain:
-talk to any Zora BEFORE RL
-Talk zora near shop BEFORE Sapphire
-Talk zora swimming behind shop AFTER RL BEFORE sapphire

Gerudo Valley:
-Carpenter Boss in Gerudo Valley
-Refuse giving poacher's saw
-Talk to Blue Carpenter in Tent BEFORE Spirit medallion
-Talk to Green Carpenter in Tent BEFORE Spirit medallion

•Are you sure every permanent flags are listed here ??? No I'm not sure lol if you think I'm missing something, please let me know !

_____________________________________________________________________________

Before we start:
GS = 	Gold Skulltula
GK 	= 	Giant's Knife
IB/HB = Iron/Hover Boots
SoS =	Song of Storms
ZL 	= 	Zelda's Lullaby
r	=	rupees
SoT = 	Song of Time
FA/LA =	Fire/Light Arrows
DF	=	Din's Fire
FW	= 	Farore's Wind
HP/HC = Heart Piece/Container
Each equips are marked like this [c-left, c-down, c-right + equipments].
Triple slash "///" means you don't change anything in the equips.
The rest should be self explanatory...

Hopefully I didn't forget anything... Now here's the actual route ! Note that is at 95% the route used by Makai:
(Each space out represents a split on my livesplit)

-Talk to Saria
-Kokiri boy cutting grass
-Talk to Mido
-Hearts Saria's house (roof)
-Bridge rupee + Talk to Fado
-Talk to Saria
-Kokiri Sword (+ 2 blue rupees)
[equip sword]
-backflip rupees + sign rupee
-Talk to Pokey
-Talk to girl in front of Mido's house
-Talk to girl near stepping stones
-Talk to Z-target girl on shop
-shop rupee + buy shield

[equip shield]
-Go to Deku (1 deku stick)
-Get Nuts
-Navi text vines
-Map chest
-Navi text door
-Slingshot + heart chest

[sticks, nuts, slingshot]
-lit torch compass room
-compass chest + heart chest + GS + more nuts
-break web + navi text web (miss = reset)
-b1 skip + push block
-burn web + open heart chest
-2-3-1
-Gohma

-Ocarina
-Go to Market (40r chains)
-Lot's o pots GS
-Talk to Malon
-Talk to Beard guy near Bazaar
-Talk to Woman near Potion Shop
-Enter + Exit + re-enter Hyrule Castle
-Get weird egg + Tree GS
[egg, ocarina, ///]
-Savewarp
-Talk to Saria
-2nd grotto with chest
-Talk to the owl near Lake Hylia
-Talk to Ingo in Ranch
-Back to Market
-Talk to Red + Blue twin
-Talk to Lady near Bombchu Bowling
-Talk to old man near Bombchu Bowling
-Talk to old lady near fountain
-Talk to couple near shooting gallery (both of them)
-Wake up Talon
-Shoot Windows in Zelda's Courtyard
-Zelda's letter + lullaby

-Go to Kak
-Talk to Mutoh (carpenters' boss)
-do the 4 first cuccos
-chest grotto near granny's house
-do the 3 last cuccos (Bottle)

-Kill & Talk to Sharp
-Open Royal Family Tomb
-Kill & Talk to Flat
-Get Sun's Song

-Dampé's HP :))))))
-Hylian Shield

-Talk to Mutoh's wife (kak party house)
-GS on Bazaar's wall
-Open gate to DMT
-Talk to Goron near DC entrance
-Go to Goron City
-Talk to Goron near entrance
-Talk to Goron near ruby's pedestal
-Talk to Goron near LW
-Talk to Darunia
[stick, ///, ///]
-Lit the torches
-Lit one of the torches before LW
-Learn Saria's Song

-Play Sun's Song
-Open Goron Shop
-Talk to Goron near ZL carpet
-Goron Bracelet
-Try to buy bombs in the shop
-Talk to goron between stairs
-Talk to goron above DC (1st option only)
-Open DC + DC HP
[///, nuts, ///]
-Glitchless DC up to lizalfos
-grab recovery heart behind lavafall
-Enter business scrub room
-glitchless DC up to bomb bag room, open path to compass room
-Navi text about corners
-Open chest before breakable wall
-Bomb Bag 20

[///, ///, bombs]
-Activate Switch ro raise platform
-Navi text about platform
-Bomb the eyes + Deku shield chest
-Finish DC normally (get GS + Deku Seeds)
-Goron Ruby

[slingshot, ocarina, ///]
-Break 3 boulders path to magic
-Blue Rupee + red rupee
-Break Boulder grotto (with the cow)
-DMC GS + grotto chest
-Break boulder + Wall path to gossip stone
-DMC HP
-Magic

-Talk to Owl
-Talk to NPC Impa House
-Set night and talk to him again
-Talk to GS guy in skull house
-GS on skull house + skull in tree
-Zora River owl
-Break all boulders + GS in tree
-Buy 3 magic beans
-Zora Domain with cucco
-Silver Scale minigame
-Talk to a Zora + nuts
-Silver Scale + RL

[///, RL, bottle]
-Talk To Zora behind shop
-Catch Fish
-Talk to Zora near Shop + nuts
(Take an extra stick if needed, you need at least 1 after Barinade)
-Mweep + Enter Jabu
-Classic Jabu with GS in basement
[///, nuts, bombs]
-Once in big room drop ruto, fall down and enter the room we never enter
-Go back to Ruto + Navi text for green tentacle
-Boomerang

[sticks, ///, boomerang]
-Throw Ruto on blue switch
-Navi text for red tentacle before compass room
-Clear map room
-Don't talk to Ruto
-Navi text for red tentacle being gone
-Clear compass room
-Navi text for blue tentacle
-Kill blue tentacle near boomerang room
-Kill green tentacle
-Go back to Ruto near map room
-Finish Jabu normally
(don't forget the 3 GS + lower the platform before Barinade)
-Zora Sapphire

[bombs, ocarina, ///]
-Tree GS ZF + FW
(You need to break the boulder next to the silver boulder)
-Sun's Song
-Grab the other GS in Fountain
[stick, ///, bottle]
-lit all the torches in ZD
-Chest HP + go to lake
-Play Song to Bonooru + catch bugs
-soft soil GS
[bombs, beans, boomerang]
-Lab GS
-Plant bean + Talk to Owl
-Go to Ranch
-Talk to Ingo
-Cucco Minigame (3rd bottle)

[slingshot, ocarina, ///]
-Epona's Song
-Silo HP + Sun's song
-4 GS in Ranch
-Ocarina of Time + Song of Time

-Talk to Sakon (thief)
-Talk to beard guy near bazaar
-Talk to dying guard in back alley
-Keaton Mask
-Talk to Woman near potion shop
-Master Sword
-Go to Kak + Skull house
-Stone of Agony + Talk to GS guy +  Adult Wallet

-Pocket Egg
-Hookshot
-Dampé's race HP
-Windmill HP + SoS
-Sun's Song x2
[hookshot, bombs, pocket cucco]
-Talk to both ladies and waku up Talon
-Cojiro
[///, ///, ocarina]
-SoS grotto in DMT
-GS Goron city
-Goron Tunic

-Talk to Goron Link again
-Talk to Medigoron + buy GK
-Bolero + Play sun's song
-Go to kokiri forest
-Know it all house, talk to both bros behind
-Talk to Kokiri girl Saria house
-GS Twin house
-Open chests mido house
-Talk to kokiri boy in his bed
-Talk to Mido in LW
-Go to Zora Fountain
-HP on ice platform
-IC glitchless, GS silver rupee room
[bottle, bottle, milk]
-3 blue fire
-Melt map chest + 50r pot red ice
-Compass room red ice
-3 blue fire
-Melt compass chest + HP red ice
[///, ///, hookshot]
-Get GS + 2 blue fire
-Silver rupee room red ice
-Silver rupee red ice
-2 blue fire
-Clean room + GS
-Melt the 3 red ice before wolfos
-Iron boots + Serenade

[///, ///, blue fire + IB]
-Open the door underwater
[remove IB]
-Melt 2 blue rupees red ice
-3 blue fire compass room
-Melt red ice entrance
[hooksot, ///, /// + IB]
-ZF 2nd HP
[unequip IB]
-Unfreeze King Zora
-Zora Tunic

-GS near frozen waterfall
-Melt zora shop red ice
[///, nuts, ocarina + GK]
-Play Saria song to Mido
-Navi text meadow
-Meadow skip + GS
-Minuet + enter Forest

-First GS + small key chest
-Poe cutscene + 2nd GS
[unequip GK]
-Stalfos
-Play SoT
-Map chest
-Lower water's level in the well
-Get nuts
-Open heart chest + 3rd GS
-small key in the well
-Navi text block puzzle room
-Navi text corridor + wallmaster
[///, ///, FW]
-Stalfos + Bow (set FW)

[///, ///, bow]
-Defeat Joelle + key chest
-Untwist corridor
-BK chest then fall
-4th GS on the arch
-Floormaster small key chest
-Arrow chest block puzzle room
[///, ocarina, ///]
-play Serenade
-Play ocarina to Bonooru (learn scarecrow song)
[///, ///, bombs + IB + zora tunic if needed]
-Open Water Temple
[unequip IB]
-Enter water temple
[bow, ///, /// + IB]
-Go to Ruto
[unequip IB]
-Map chest
-Play ZL
-key chest under map chest
-key chest under key chest under map chest
-push block (path to dragon room)
[hookshot, ///, /// + equip IB]
-load corridor and come back
[unquip IB]
-Go to path with 2 tektites + GS
[equip IB]
-Sink after blowing up the floor
[unequip IB]
-Activate both switches + GS
[///, ///, bow]
-Savewarp
-Play ZL to rise water
-Play scarecrow song
-GS in double waterfall room
-Dark Link
-Longshot + SoT

-Navi text about whirlrims
[equip GK + IB]
-Get the GS then hookshot the spot on ceiling
-Shoot eye switch
[FW, nuts, /// + unequip IB]
-both small key chests
-FW back to Forest, JS with GK
-Beth + Compass chest
(v do these equips after stunning Beth with a nut)
[longshot, ocarina, /// + unequip GK]
-Navi text wallmaster
-Twist Corridor
-Leave chess room and play scarecrow song
-Chess room switch + chest
-Amy's puzzle
-Defeat Meg
-Spinning room
-Arrow chest + GS
-Defeat PG
[equip GK]
(unless you want to go for PG one cycle with MS)
-Forest Medallion

-Talk to Deku Sprout
-Serenade back to water
[///, ///, FW + equip IB]
-Sidehops and sink to the entrance
[unequip IB]
-Longshot the torch to Ruto's room
-Play ZL to lower water's level
-Set FW + enter tower
-Grab GS + Play ZL for mid level water
[equip IB]
-Small key chest under tower
[unequip IB + ///, bow, ///]
-Use FW, open mid level locked door
-Eye Switch corridor 1st trip
-Compass room
-Eye Switch corridor 2nd trip
-Push block + small key chest
-Go to BK room
[///, bombs, /// + equip IB]
-Set FW
-longshot on invisible spot
-Clear the room we never go in
-Clear the 2nd room we never go in
-GS + BK chest
-Use FW
[///, ocarina, bow]
-Rise water level
-Go to Morpha
[unequip GK]
-Water Medallion

-Shoot sun + Play sun's song
-GS in tree + Fire Arrow
-Fishing pond
-Fisherman's hat + gold scale
(sidehop sideroll, 2 sidehops right + 2 left, backflip, longroll)

-HP on lab's rooftop
[///, ///, bombs]
-HP scrub grotto
-Go to Gerudo Valley
-Talk to Mutoh
-Play Sun's Song if needed + 2 GS
-Gerudo's Fortress
-50r Crate + Chest HP
-Gold skull + 4th Carpenter
-3rd Carpenter
-2nd Carpenter
-1st Carpenter + Gerudo's Card

-Go To Wasteland
[///, ///, FA + Goron tunic if needed]
-Lit torches + chest + GS
-Go to Colossus
-Oasis GS
-Requiem of Spirit

-Go to Fire Temple
-Classic Fire Temple, don't forget GS
[///, FW, bombs]
-Set FW on bombable + use it after small key
[///, bow, ocarina]
-Map chest after gold rupee chest
-Compass chest
-backflip + sideroll, sidehop + sideroll, hold up, backwalk
(Skipping fire wall like Makai does is not allowed anymore !)
[///, bombs ///]
-Hammer

[///, ///, hammer]
-Do the "stair" room
-Smash all the pillars (or PCS)
-Rusty switches (navi text) + key chest
-Open left door (key door)
-Savewarp
-BK Section, don't forget GS + bomb chest
-Volvagia

-Break DMC grotto boulder
-3 other boulders (double magic + path to DMT)
[///, ocarina, ///]
-Double Magic
[///, ///, Cojiro]
-Trade for Odd Mushroom

-Play Sun's song
-Go to Ranch
-Play Epona Song to Malon
-Play Sun's song
-Talk to Ingo, 10r game
-Climb horse and leave
-Play again
-Climb normal horse
-Refuse the 50r bet
-Leave the minigame and re-enter minigame
-Climb normal horse (yes again)
-Bet 50r and lose
-select bottom option for 10r minigame
-Call Epona and bust Ingo twice.
-Escape from East fence (Kokiri forest side)
-Big Poe near silver block
-Big Poe against the wall
-Big Poe Kak
-Nocturne of Shadow
-Roof guy HP
-Trade for Odd Potion

-GS Kak
-Impa house HP
-Clean Skull house + Sun's song
-Impa house red rupee + NPC
-Quiver 40
[///, ///, hammer]
-Talk to Talon
-gold rupee grotto
-GS grotto near kak
-Play Sun's Song before entering market
[big poe, big poe, big poe]
-Trade Big poes
-Prelude of Light + Child 2

-Play Nocturne
[chus, bottle, ///]
-Get GS + enter hylian shield grave
-Blow up wall and leave
-Catch bugs
-Archery GS + 20r
-Watch Tower GS
[Magic beans, ///, Keaton mask]
-Sell Keaton Mask
-Soft soil GS + plant bean (keep bugs)
[Bombchus, ///, ocarina]
-Play Serenade
-Fire arrow GS
-Fishing pond HP

-Play Prelude
-Skull mask
-Talk to itching lady near shooting gallery
-Sell bugs
-Talk to lady blue dress near bombchu bowling
-Sun's Song Back alley
-Buy 2 set of bombchus left + 1 right
-20r box market
-Din's Fire
-SoS grotto
-Bugs + 20r + GS
[///, boomerang, ///]
-Get caught by guards (unless you got caught earlier)
-Play Minuet
-Wolfos grotto meadow
-Open nut upgrade grotto
-5r boulder
[bottle, skull mask, ///]
-Deku stick upgrade Stage

-Leave and play sun's Song
-SoS grotto Kokiri forest
-Catch fish + open chest
-Saria song + skull mask skull kid
[magic beans, bugs, ///]
-soft soil GS + plant bean (keep bugs)
-Deku stick upgrade Scrub
-Play sun's song
[bombs, slingshot, ///]
-Bullet bag upgrade
-Ocarina minigame
-Go to Goron city
-Pot HP
[Bombchus, boomerang, ///]
-Bomb bag upgrade + HP

-Talk to Medigoron
-Break 3 boulders to boulder maze
-open both chests + GS
-Play Sun Song
-LW grotto
-HP + GS Zora river
-Frogs HPs
(Frogs: A < > v < > v A v A v > < A)
-2nd HP Zora River
-Buy all magic beans (at least 490r)

[magic beans, fish, ///]
-Plant bean + play prelude
-Sell Fish + Spooky mask
-Play nocturne
[///, DF, bugs]
-Open Shadow Temple
-Soft soil GS + plant bean (keep bugs)
[boomerang, spooky mask, ///]
-Box HP with boomerang
-Sell spooky mask
[Deku sticks, ocarina, bombchus]
-Play SoS to drain the well
-Kill both skulltulas
-Small key 1
-Kill Like Like + bubble
-Play ZL to drain water
-Kill skulltula + open bottom left chest
-Summon wallmaster and kill it
-Kill last skulltula and open nut chest
-Fall in the middle hole and get 5x5r
-destroy the 3sets of 2 boulders
-Open map chest (kill redead)
-Collect silver rupees
-Small key 2
-Bombchu chest
-Bomb chest
[///, FW, DF]
-Set FW before Dead Hand room
-Dead hand room (2 chests)

-Compass chest
-Recovery heart chest
-Use DF in coffins room
-Kill the gibdo laying in the coffin
(you have to wait for the corpse to dissapear, about 19-20sec)
-Get 3rd key + recovery heart
[///, ///, boomerang]
-GS in deku baba room
-2nd GS in keeses room
-Deku shield chest
-Hylian shield chest + GS
[magic beans, ocarina, bugs + hylian shield]
-Play bolero
-Soft Soil GS + plant bean (keep bugs)
-Play Requiem
-Soft Soil GS + plant bean (keep bugs)
-Enter Spirit Temple
[bombs, DF, boomerang]
(missing next flag is literally a run killer so it's safe to save here)
-Talk to Nabooru 3rd option, 2nd option, 2nd option again (refuse request)
-Accept her request
-Clear rooms + Deku shield chest
-DF on Anubis
-Silver rupees room + chest + GS
[bombchus, ///, /// + deku shield]
-Bombchus room, 2 chests + skull
-Last silver rupee room
[///, Sticks, ///]
-GS before knuckle
[///, ocarina, ///]
-Silver gauntlets + play Prelude

-Bunny Hood
-Play sun's song back alley
-Buy 2 set of chus right + 1 left
-Play sun's song
-Leave Market
-Drop random bombchus
-Play sun's song middle of the field
-grotto HP near Runnerguy
[bombs, bunny hood, ///]
-Sell bunny hood
-Gerudo valley GS
-Box HP
[magic beans, ocarina, bugs]
-Soft Soil GS + plant bean (keep bugs)
-Waterfall HP + play prelude
-Mask of Truth

-Bullet bag minigame
-Bombchu Bowling HP + bomb bag
-Play Sun's song
-2 blue rupees on balcony
-RichardZ HP
-Buy last bombchus
[///, ///, lens]
-Chests minigame
[Boomerang, Mask of Truth, bombs]
-Savewarp

-Know-it-all GS
-Talk to Mido
-Mido house blue rupee
-Deku nuts upgrade
[magic beans, bugs, bombchus]
-Soft Soil GS + plant bean (keep bugs) LW
-Soft Soil GS + plant bean KF
[sticks, slingshot, boomerang]
-Deku Tree 2
-Basement 1 GS
-Clear Deku Tree
[bombchus, ocarina, ///]
-Get last GS + play prelude
-Adult 2
[Longshot, ocarina, DF]
-Enter Shadow Temple
-Map chest + Hover boots

[///, ///, Lens + HB]
-Truth spinner
[///, nuts, bombchus + unequip HB]
-Compass chest
-Silver rupee room
-Go to invisible Scythe room
[///, ocarina, bow]
-clear room + play SoT
-Go to "blocks with spikes" room
-Open the 3 chests + GS
-Silver rupees + redeads room
-Clear skull pot room
[///, ///, bombchus]
-Blow up the skull + get key and GS
-Fans room
-Redead room chest
-Pull block before boat
-Scarecrow GS (no need to play scarecrow song)
-Floormaster room
-GS room + shoot the painting above the door
[bow, ///, DF]
-BK room
-Blow up pillar
-Play SoT
[///, longshot, /// + HB + GK]
-Go to Bongo
[unequip HB + GK]
-Shadow Medallion

-Royal Family Tomb chest
-Kill + talk to Sharp
[odd potion, ///, ocarina]
-Sun's Song grave HP
-Play Minuet
-Deku Nut upgrade
-Play Sun's Song
-Magic bean GS
-Trade for Poacher's Saw

-Call Epona in HF
-Big poe patch of grass (trees area)
[hammer, big poe, bottle]
-Big poe trees area
-Boulder grotto + chest
-Trade both big poes
-Ranch Big poe
-Cow in House

-Market Big Poe
-Trade both big poes
-Grotto near market in HF
-Big poe past the river
-Boulder grotto
-Big poe near tree valley
-Big poe near valley
-Break the 4 bronze boulders near valley
[///, FA, longshot + GK]
-Web grotto GS
-4 boulders before bridge Valley
-7 boulders past bridge + 50r chest
[poacher's saw, bow, ///]
(Next flag is also a run killer like Nabooru so save here for safety)
-Refuse trade for broken sword
-Accept the trade

-Talk to the 2 carpenters in the middle
-Start marathon race
-Enter GTG
-Shoot eye switch + 2 chests
-Stalfos room
-Silver rupee room
-Wolfos room
-Like Like room (4chests)
-Arrow chest wolfos room
[hammer, ///, /// + GK + HB]
-Magic jar statue's head
[unequip HB]
-Void after lower chest for upper chest
-Lava slug room (2chests + switch + eye switch)
[bombs, ocarina, ///]
-Dinolfos room
[equip HB]
-Silver ruppees lava room
-Water room + play SoT
[equip IB]
-Silver rupees Water room
[unequip IB]
-Play SoT in lava room
-Finish GTG
(doesn't matter if Giant's Knife breaks at this point, keep it equiped)

[Broken sword, ///, ///]
-Savewarp
-Archery minigame twice
-Play sun's song + Archery GS
-Play Bolero
-Volcano HP
-Trade for prescription
[hammer, ///, ///]
-Goron city maze
-gold rupee chest + Play Sun's song
-Play SoT lava room
-Talk to Mido
[bombs, ///, /// + equip HB]
-Waterfall clip to ZD
[unequip HB]
-Secret GS under silver boulder path
-Play sun's song
[prescription, ///, ///]
-Trade for eyeball frog

-Play sun's song in ZR
[hammer, ///, ///]
-Get both GS + grotto chest
-Call Epona and go to Lake
-Dive HP
[equip IB]
-3x20r + box GS
[///, ///, frog + unequip IB]
-Trade for eye drops
-Play bolero
-Break DMC boulder
-Trade for claim check
-Play sun's song x7 (for night) + get BGS

-3 bronze boulders + GS
[///, ///, longshot + BGS if not equiped already]
-Upper DC GS + boulder
-50r behind breakable wall
-2 bronze boulders before jumping to kak
-2 bronze boulders before wall
-Breakable wall GS
-3 bronze boulders before DC
-Go to DC Map chest
[///, bombs, ///]
-Blow up stairs
-Compass chest
-Both staircase GS
-Baby dodongos GS (no scarecrow needed)
-Break wall to last GS
[///, ocarina, ///]
-Break wall to gossip stone + pull out ocarina in front of it
(You need to be pretty close to the gossip stone, no need to play songs)
-Double business scrub room near bomb bag chest
-Play Requiem

-Arch HP + Adult Spirit
-Compass room
-Silver rupee room
-Take GS after key chest
-Activate every suns
-Play ZL left hand's statue
-Blue rupee chest + rusty switch
-Key chest right hand
-Shortcut entrance
[FA, bombs, ///]
-Map chest
-Anubis + beamos room
-Both heart chests before Knuckle
-Mirror shield

[bow, ocarina, /// + mirror shield]
-Recovery hearts wall of death room
-BK room eye switch
[bombs, ///, ///]
-Finish Spirit
-Don't forget Skull before Nabooru
-Spirit Medallion (20 hearts \o/)

-Play sun's song + get colossus GS
-NL + play prelude
-LACS
-Kill a redead in Market
(you have to wait for the corpse to dissapear, about 19-20sec)
[big poe, big poe, big poe]
-4th bottle

-Rainbow Bridge
[longshot, DF, Bow]
-Forest Trial + wolfos chest
[equip HB]
-Silver rupees room
[unequip HB + bottle, bottle, LA]
-2 blue fire
[hammer, longshot, ///]
-Clear Water trial (2 chests)
-Small chest Shadow trial
-Hookshot torch + Like Like
[equip HB]
-Golden Gauntlets

-Clear Shadow trial (2 chests)
-Silver rupees Fire trial
[ocarina, ///, /// + unequip HB]
-Clear Light trial (8 chests)
[bombchus, ///, FA]
-Clear Spirit Trial (2 chests)
[ocarina, ///, LA]
-Ganon's Castle GS
-Double Defense

[hammer, bottle, ///]
-3 bronze boulders to break
-Clear Ganon's Tower
-Ganondorf

-Tower collapse
[equip MS] (good place to save if you want to check everything post game)
-Ganon

Congrats you're done !