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- # bin/lalign36 -E 10.0 -f -12 -g -2 ./wwwtmp/lalign19826.1.seq ./wwwtmp/lalign19826.2.seq -J -K 3
- LALIGN finds non-overlapping local alignments
- version 36.3.5e Nov, 2012(preload8)
- Please cite:
- X. Huang and W. Miller (1991) Adv. Appl. Math. 12:373-381
- Query: ./wwwtmp/lalign19826.1.seq
- 1>>>unknown 379 bp - 379 aa
- Library: ./wwwtmp/lalign19826.2.seq
- 379 residues in 1 sequences
- Statistics: (shuffled [500]) MLE statistics: Lambda= 0.1689; K=0.02257
- statistics sampled from 1 (1) to 500 sequences
- Threshold: E() < 10 score: 34
- Algorithm: Smith-Waterman (SSE2, Michael Farrar 2006) (7.2 Nov 2010)
- Parameters: BL50 matrix (15:-5), open/ext: -12/-2
- Scan time: 0.010
- >>unknown 379 bp (379 aa)
- Waterman-Eggert score: 2289; 563.2 bits; E(1) < 4.2e-165
- 85.7% identity (97.6% similar) in 378 aa overlap (1-378:1-378)
- 10 20 30 40 50 60
- unknow MATAGKVIECKAAVAWEAGKPLSIEEVEVAPPHAMEVRVKILYTALCHTDVYFWEAKGQT
- ::::::::.:::::::::::::..::::::::.:::::::::.:.::::::::::::::
- unknow MATAGKVIKCKAAVAWEAGKPLTMEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQI
- 10 20 30 40 50 60
- 70 80 90 100 110 120
- unknow PVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKDCAHCKSEESNLCDLLRINV
- :.::::.::::::::::::::::...::::::::::::::.: :::: :::.:::::::.
- unknow PMFPRIFGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINT
- 70 80 90 100 110 120
- 130 140 150 160 170 180
- unknow DRGVMIGDGQSRFTINGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCVLSCGIS
- :::::::::.:::.:.::::.:::::::::::::.::::.::::::::::::::::::::
- unknow DRGVMIGDGKSRFSIGGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGIS
- 130 140 150 160 170 180
- 190 200 210 220 230 240
- unknow TGLGATLNVAKPKKGSTVAIFGLGAVGLAAMEGARMAGASRIIGVDLNPAKYEQAKKFGC
- :::::..::::: ::::::::::::::::: ::::.:::::::::::: ...:.:.::::
- unknow TGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNAVRFEEARKFGC
- 190 200 210 220 230 240
- 250 260 270 280 290 300
- unknow TDFVNPKDHTKPVQEVLVEMTNGGVDRAVECTGHIDAMIAAFECVHDGWGVAVLVGVPHK
- :.::::::::::::.::..::::::::.:::::...::: ::::::::::::::::::::
- unknow TEFVNPKDHTKPVQQVLADMTNGGVDRSVECTGNVNAMIQAFECVHDGWGVAVLVGVPHK
- 250 260 270 280 290 300
- 310 320 330 340 350 360
- unknow EAVFKTYPMNFLNERTLKGTFFGNYKPRTDLPEVVEMYMRKELELEKFITHSVPFSQINT
- .: :::.:::::::::::::::::.:::::::.::::::.::::.:::::::::::.:::
- unknow DAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVEMYMKKELEVEKFITHSVPFSEINT
- 310 320 330 340 350 360
- 370
- unknow AFDLMLKGEGLRCIMRMD
- ::::: ::::.:::.:::
- unknow AFDLMAKGEGIRCIIRMD
- 370
- >--
- Waterman-Eggert score: 50; 17.7 bits; E(1) < 0.5
- 39.4% identity (63.6% similar) in 33 aa overlap (65-94:221-253)
- 70 80 90
- unknow RILGHEAGGIV--ESVGEGVTELV-PGDHVLPV
- ::.: . ... :. : ::.: : ::. ::
- unknow RIIGVDLNAVRFEEARKFGCTEFVNPKDHTKPV
- 230 240 250
- >--
- Waterman-Eggert score: 48; 17.2 bits; E(1) < 0.62
- 60.0% identity (66.7% similar) in 15 aa overlap (239-253:81-94)
- 240 250
- unknow GCTDFVNPKDHTKPV
- : :: : : ::. ::
- unknow GVTD-VAPGDHVLPV
- 90
- 379 residues in 1 query sequences
- 379 residues in 1 library sequences
- Scomplib [36.3.5e Nov, 2012(preload8)]
- start: Tue Apr 28 08:46:03 2015 done: Tue Apr 28 08:46:03 2015
- Total Scan time: 0.010 Total Display time: 0.010
- Function used was LALIGN [36.3.5e Nov, 2012(preload8)]
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