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  1. 2018-08-18T16:46:49.814475 tid1280 [IFO,LogManager] Enabled primary log file C:\Program Files\Micro-Manager-2.0gamma\CoreLogs\CoreLog20180818T164649_pid4652.txt
  2. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] User: peter
  3. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] Host: Neptune
  4. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] MM Studio version: 2.0.0-gamma1 20180803
  5. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] MMCore version 8.7.1
  6. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] Device API version 69, Module API version 10
  7. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] Operating System: Windows 10 (amd64) 10.0
  8. 2018-08-18T16:46:49.815475 tid1280 [IFO,App] JVM: Java HotSpot(TM) 64-Bit Server VM, version 1.8.0_152, 64-bit
  9. 2018-08-18T16:46:49.817474 tid1280 [IFO,App] EDTHangLogger: Started monitoring of EDT hangs
  10. [ ] [heartbeat timeout = 4500 ms, hang check interval = 1000 ms]
  11. 2018-08-18T16:46:49.835463 tid2092 [IFO,App] Searching for plugins in C:\Program Files\Micro-Manager-2.0gamma/mmplugins
  12. 2018-08-18T16:46:49.985377 tid2092 [IFO,App] Found plugin org.micromanager.acquiremultipleregions.AcquireMultipleRegions@21deec00
  13. 2018-08-18T16:46:49.988376 tid2092 [IFO,App] Found plugin org.micromanager.asidispim.ASIdiSPIM@3cd248bb
  14. 2018-08-18T16:46:49.989375 tid2092 [IFO,App] Found plugin ch.epfl.leb.autolase.AutoLasePlugin@9c93f8c
  15. 2018-08-18T16:46:49.989375 tid2092 [IFO,App] Found plugin org.micromanager.CRISP.CRISP@b1e32c3
  16. 2018-08-18T16:46:49.990375 tid2092 [IFO,App] Found plugin com.asiimaging.CRISPv2.ASI_CRISP_V2@50125ea6
  17. 2018-08-18T16:46:49.990375 tid2092 [IFO,App] Found plugin org.micromanager.duplicator.DuplicatorPlugin@2ae0f64d
  18. 2018-08-18T16:46:49.991374 tid2092 [IFO,App] Found plugin org.micromanager.plugins.framecombiner.FrameCombinerPlugin@1b6d1df6
  19. 2018-08-18T16:46:49.991374 tid2092 [IFO,App] Found plugin GaussianTrack_@4e34fa0
  20. 2018-08-18T16:46:49.992373 tid2092 [IFO,App] Found plugin org.micromanager.hcs.HCSPlugin@3a35fc0a
  21. 2018-08-18T16:46:49.992373 tid2092 [IFO,App] Found plugin org.micromanager.imageflipper.FlipperPlugin@2dd2796
  22. 2018-08-18T16:46:49.992373 tid2092 [IFO,App] Found plugin org.micromanager.intelligentacquisition.IntelligentAcquisition@faee81f
  23. 2018-08-18T16:46:49.992373 tid2092 [IFO,App] Found plugin edu.ucsf.valelab.mmclearvolumeplugin.CVPlugin@1a6e804c
  24. 2018-08-18T16:46:49.993373 tid2092 [IFO,App] Found plugin edu.ucsf.valelab.mmclearvolumeplugin.CVInspectorPanelPlugin@3cf0fe5a
  25. 2018-08-18T16:46:49.993373 tid2092 [IFO,App] Found plugin com.imaging100x.tracker.TrackerPlugin@52727568
  26. 2018-08-18T16:46:49.993373 tid2092 [IFO,App] Found plugin org.micromanager.multicamera.MultiCamera@1e0b8950
  27. 2018-08-18T16:46:49.993373 tid2092 [IFO,App] Found plugin org.micromanager.multichannelshading.MultiChannelShading@6adffa08
  28. 2018-08-18T16:46:49.994372 tid2092 [IFO,App] Found plugin edu.umassmed.pgfocus.pgFocus@52fd6710
  29. 2018-08-18T16:46:49.994372 tid2092 [IFO,App] Found plugin org.micromanager.pipelinesaver.SaverPlugin@47e7d8fd
  30. 2018-08-18T16:46:49.994372 tid2092 [IFO,App] Found plugin org.micromanager.projector.ProjectorPlugin@20bf1cd5
  31. 2018-08-18T16:46:49.994372 tid2092 [IFO,App] Found plugin org.micromanager.ptctools.PtcTools@41ca1109
  32. 2018-08-18T16:46:49.995372 tid2092 [IFO,App] Found plugin org.micromanager.ratioimaging.RatioImaging@78b62bc7
  33. 2018-08-18T16:46:49.996371 tid2092 [IFO,App] Found plugin org.micromanager.recall.RecallPlugin@70728d71
  34. 2018-08-18T16:46:49.996371 tid2092 [IFO,App] Found plugin org.micromanager.plugins.sequencebuffermonitor.SequenceBufferMonitor@10d18b5a
  35. 2018-08-18T16:46:49.996371 tid2092 [IFO,App] Found plugin org.micromanager.slideexplorer.SlideExplorerPlugin@34debacd
  36. 2018-08-18T16:46:49.996371 tid2092 [IFO,App] Found plugin org.micromanager.plugins.snaponmove.SnapOnMovePlugin@643b8375
  37. 2018-08-18T16:46:49.996371 tid2092 [IFO,App] Found plugin org.micromanager.splitview.SplitView@469386
  38. 2018-08-18T16:46:49.996371 tid2092 [IFO,App] Found plugin PMQI.AutoWB@1cd1438f
  39. 2018-08-18T16:46:49.997371 tid2092 [IFO,App] Found plugin org.micromanager.zprojector.ZProjectorPlugin@5d189a0a
  40. 2018-08-18T16:46:49.997371 tid2092 [IFO,App] Searching for plugins in C:\Program Files\Micro-Manager-2.0gamma/mmautofocus
  41. 2018-08-18T16:46:50.015360 tid2092 [IFO,App] Found plugin org.micromanager.autofocus.HardwareFocusExtender@2d3a3755
  42. 2018-08-18T16:46:50.018359 tid2092 [IFO,App] Found plugin org.micromanager.autofocus.Autofocus@6fac27df
  43. 2018-08-18T16:46:50.019358 tid2092 [IFO,App] Found plugin org.micromanager.autofocus.AutofocusDuo@4305e44f
  44. 2018-08-18T16:46:50.020358 tid2092 [IFO,App] Found plugin org.micromanager.autofocus.AutofocusTB@1e78dec4
  45. 2018-08-18T16:46:50.023356 tid2092 [IFO,App] Found plugin org.micromanager.autofocus.OughtaFocus@223d16d4
  46. 2018-08-18T16:46:50.024355 tid2092 [IFO,App] Searching for plugins in class loader
  47. 2018-08-18T16:46:50.460105 tid2092 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.intensity.IntensityInspectorPanelPlugin@1959efe7
  48. 2018-08-18T16:46:50.461105 tid2092 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.metadata.SummaryMetadataInspectorPanelPlugin@5ba2d30
  49. 2018-08-18T16:46:50.461105 tid2092 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.metadata.PlaneMetadataInspectorPanelPlugin@5bea9cb7
  50. 2018-08-18T16:46:50.461105 tid2092 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.comments.CommentsInspectorPanelPlugin@dabea79
  51. 2018-08-18T16:46:50.461105 tid2092 [IFO,App] Found plugin org.micromanager.display.overlay.internal.overlays.PatternOverlayPlugin@5c5562
  52. 2018-08-18T16:46:50.461105 tid2092 [IFO,App] Found plugin org.micromanager.display.inspector.internal.panels.overlays.OverlaysInspectorPanelPlugin@52769f32
  53. 2018-08-18T16:46:50.461105 tid2092 [IFO,App] Found plugin org.micromanager.display.overlay.internal.overlays.ScaleBarPlugin@51f9f36a
  54. 2018-08-18T16:46:50.462104 tid2092 [IFO,App] Found plugin org.micromanager.display.overlay.internal.overlays.TimestampPlugin@3db162f0
  55. 2018-08-18T16:46:50.462104 tid2092 [IFO,App] Found plugin org.micromanager.acquisition.internal.DefaultMDAPlugin@5f24d761
  56. 2018-08-18T16:46:50.462104 tid2092 [IFO,App] Found plugin org.micromanager.display.internal.gearmenu.ExportImagesItem@394d5cb8
  57. 2018-08-18T16:46:50.462104 tid2092 [IFO,App] Found plugin org.micromanager.display.internal.gearmenu.LineProfileItem@27b18a58
  58. 2018-08-18T16:46:50.463104 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.AutofocusButtons@f1fd3f7
  59. 2018-08-18T16:46:50.463104 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.CloseAllButton@5b4d7c0a
  60. 2018-08-18T16:46:50.464103 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.ExposureTime@44e9b79b
  61. 2018-08-18T16:46:50.465102 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.LiveButton@3bc15b15
  62. 2018-08-18T16:46:50.466102 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.MDAButtons@1c533c58
  63. 2018-08-18T16:46:50.467101 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.PresetButton@63340515
  64. 2018-08-18T16:46:50.467101 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.RefreshButton@660044d7
  65. 2018-08-18T16:46:50.467101 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.SavedMDAButton@6b9069b2
  66. 2018-08-18T16:46:50.468101 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.ScriptButton@28517c7b
  67. 2018-08-18T16:46:50.468101 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.ShutterControl@40e45d3a
  68. 2018-08-18T16:46:50.469100 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.SnapButton@71fed1e
  69. 2018-08-18T16:46:50.469100 tid2092 [IFO,App] Found plugin org.micromanager.quickaccess.internal.controls.TextLabel@65706d4a
  70. 2018-08-18T16:46:50.469100 tid2092 [IFO,App] Plugin loading took 634ms
  71. 2018-08-18T16:46:50.469100 tid1280 [IFO,App] Finished waiting for plugins to load
  72. 2018-08-18T16:46:53.946107 tid1280 [IFO,Core] Did unload all devices
  73. 2018-08-18T16:46:53.946107 tid1280 [IFO,Core] Did unload all devices
  74. 2018-08-18T16:46:54.178973 tid1280 [IFO,Core] Did load device Grasshopper3 GS3-U3-41C6C_15307349 from PointGrey; label = Grasshopper3 GS3-U3-41C6C_15307349
  75. 2018-08-18T16:46:54.178973 tid1280 [IFO,Core] Will initialize 1 devices
  76. 2018-08-18T16:46:54.178973 tid1280 [IFO,Core] Will initialize device Grasshopper3 GS3-U3-41C6C_15307349
  77. 2018-08-18T16:46:54.178973 tid1280 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] FlyCapture2_v100.dll version number is 2.10.3.266
  78. 2018-08-18T16:46:54.511782 tid1280 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] Format 7 mode 0 is available
  79. 2018-08-18T16:46:54.512782 tid1280 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] Format 7 mode 1 is available
  80. 2018-08-18T16:46:54.513781 tid1280 [IFO,dev:Grasshopper3 GS3-U3-41C6C_15307349] Format 7 mode 2 is available
  81. 2018-08-18T16:46:54.639709 tid1280 [IFO,Core] Did initialize device Grasshopper3 GS3-U3-41C6C_15307349
  82. 2018-08-18T16:46:54.639709 tid1280 [IFO,Core] Default camera set to Grasshopper3 GS3-U3-41C6C_15307349
  83. 2018-08-18T16:46:54.639709 tid1280 [IFO,Core] Finished initializing 1 devices
  84. 2018-08-18T16:46:54.639709 tid1280 [IFO,Core] Default camera set to Grasshopper3 GS3-U3-41C6C_15307349
  85. 2018-08-18T16:46:54.644706 tid1280 [IFO,Core] Did update system state cache
  86. 2018-08-18T16:46:55.509211 tid1280 [IFO,App] Rebuilding config group table
  87. 2018-08-18T16:46:55.509211 tid1280 [IFO,App] Finished rebuilding config group table
  88. 2018-08-18T16:46:55.518206 tid1280 [IFO,App] Startup script (C:\Program Files\Micro-Manager-2.0gamma\MMStartup.bsh) not present
  89. 2018-08-18T16:46:55.518206 tid1280 [IFO,App] Updating GUI; config pad = true; from cache = false
  90. 2018-08-18T16:46:55.522203 tid1280 [IFO,App] Rebuilding config group table
  91. 2018-08-18T16:46:55.522203 tid1280 [IFO,App] Finished rebuilding config group table
  92. 2018-08-18T16:46:55.527200 tid1280 [IFO,Core] Did update system state cache
  93. 2018-08-18T16:46:55.527200 tid1280 [IFO,App] Finished updating GUI
  94. 2018-08-18T16:47:03.425672 tid1280 [IFO,App] Class: class org.micromanager.display.internal.displaywindow.DisplayController
  95. 2018-08-18T16:47:03.425672 tid1280 [IFO,App] Classloader: ij.io.PluginClassLoader@23a5fd2
  96. 2018-08-18T16:47:03.466648 tid1280 [IFO,App] Failed to find affine transform
  97. [ ] java.lang.Exception: "": Configuration group not defined in Thread[AWT-EventQueue-0,6,main]
  98. [ ] at mmcorej.MMCoreJJNI.CMMCore_getPixelSizeAffine__SWIG_1(Native Method)
  99. [ ] at mmcorej.CMMCore.getPixelSizeAffine(CMMCore.java:794)
  100. [ ] at org.micromanager.internal.navigation.CenterAndDragListener.getOrientation(CenterAndDragListener.java:116)
  101. [ ] at org.micromanager.internal.navigation.CenterAndDragListener.<init>(CenterAndDragListener.java:62)
  102. [ ] at org.micromanager.internal.navigation.UiMovesStageManager.activate(UiMovesStageManager.java:63)
  103. [ ] at org.micromanager.internal.SnapLiveManager.createDisplay(SnapLiveManager.java:500)
  104. [ ] at org.micromanager.internal.SnapLiveManager.createOrResetDatastoreAndDisplay(SnapLiveManager.java:759)
  105. [ ] at org.micromanager.internal.SnapLiveManager.displayImage(SnapLiveManager.java:669)
  106. [ ] at org.micromanager.internal.SnapLiveManager$2.run(SnapLiveManager.java:429)
  107. [ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:301)
  108. [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
  109. [ ] at java.awt.EventQueue.access$500(EventQueue.java:97)
  110. [ ] at java.awt.EventQueue$3.run(EventQueue.java:709)
  111. [ ] at java.awt.EventQueue$3.run(EventQueue.java:703)
  112. [ ] at java.security.AccessController.doPrivileged(Native Method)
  113. [ ] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
  114. [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
  115. [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
  116. [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
  117. [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
  118. [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
  119. [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
  120. [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
  121. 2018-08-18T16:47:10.729485 tid1280 [IFO,App] Class: class org.micromanager.display.internal.displaywindow.DisplayController
  122. 2018-08-18T16:47:10.729485 tid1280 [IFO,App] Classloader: ij.io.PluginClassLoader@23a5fd2
  123. 2018-08-18T16:48:01.767226 tid1280 [IFO,App] EDTHangLogger: Stopping monitoring of EDT hangs
  124. 2018-08-18T16:48:01.782217 tid1280 [IFO,Core] Did unload all devices
  125. 2018-08-18T16:48:01.782217 tid1280 [IFO,Core] System reset
  126. 2018-08-18T16:48:01.810201 tid1280 [IFO,Core] Core session ended
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