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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- S1: anatolia
- indivname: anatolia.ind
- snpname: anatolia.snp
- genotypename: anatolia.geno
- popleft: left
- popright: right
- details: YES
- allsnps: YES
- inbreed: NO
- ## qpAdm version: 1520
- seed: 1637938197
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.2982
- left pops:
- Turkey_N
- Turkey_Boncuklu_N
- Iran_GanjDareh_N
- PPN
- right pops:
- Mbuti.DG
- ONG.SG
- EHG
- CHG
- England_Mesolithic
- Morocco_Iberomaurusian
- IVC
- WSHG
- Tarim_EMBA1
- Israel_Natufian_published
- Spain_ElMiron
- Mongolia_North_N
- codimension 1
- f4info:
- f4rank: 2 dof: 9 chisq: 17.184 tail: 0.0459177496 dofdiff: 11 chisqdiff: -17.184 taildiff: 1
- B:
- scale 1.000 1.000
- ONG.SG -0.062 0.917
- EHG 0.554 1.366
- CHG -0.428 1.131
- England_Mesolithic 1.359 1.265
- Morocco_Iberomaurusian 1.209 -0.682
- IVC -0.797 0.459
- WSHG -0.134 0.907
- Tarim_EMBA1 -0.353 0.975
- Israel_Natufian_published 2.163 -1.209
- Spain_ElMiron 1.320 1.044
- Mongolia_North_N -0.049 0.640
- A:
- scale 126.370 196.910
- Turkey_Boncuklu_N 0.023 0.463
- Iran_GanjDareh_N -1.724 -0.266
- PPN 0.170 -1.648
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 17.184 taildiff: 0.0459177496
- B:
- scale 508.992 72.101 111.876
- ONG.SG 0.863 -0.044 -0.881
- EHG 1.429 -0.698 -1.247
- CHG 0.584 0.285 -1.214
- England_Mesolithic 1.231 -1.493 -1.030
- Morocco_Iberomaurusian -1.119 -1.158 0.764
- IVC -0.411 0.692 -0.651
- WSHG 0.573 0.019 -0.937
- Tarim_EMBA1 1.169 0.252 -0.982
- Israel_Natufian_published -1.793 -2.054 1.412
- Spain_ElMiron 0.044 -1.449 -0.923
- Mongolia_North_N 0.157 -0.038 -0.666
- A:
- scale 1.732 1.732 1.732
- Turkey_Boncuklu_N 1.732 0.000 0.000
- Iran_GanjDareh_N 0.000 1.732 0.000
- PPN 0.000 0.000 1.732
- best coefficients: 0.761 0.031 0.209
- totmean: 0.761 0.031 0.209
- boot mean: 0.761 0.030 0.208
- std. errors: 0.032 0.017 0.024
- error covariance (* 1,000,000)
- 1008 -353 -656
- -353 296 56
- -656 56 599
- summ: Turkey_N 3 0.045918 0.761 0.030 0.208 1008 -353 -656 296 56 ...
- 599
- fixed pat wt dof chisq tail prob
- 000 0 9 17.184 0.0459177 0.761 0.031 0.209
- 001 1 10 69.145 6.48118e-11 1.009 -0.009 0.000 infeasible
- 010 1 10 20.479 0.0250312 0.799 0.000 0.201
- 100 1 10 450.601 0 0.000 0.243 0.757
- 011 2 11 68.614 2.2387e-10 1.000 0.000 0.000
- 101 2 11 1578.021 0 0.000 1.000 0.000
- 110 2 11 614.299 0 0.000 0.000 1.000
- best pat: 000 0.0459177 - -
- best pat: 010 0.0250312 chi(nested): 3.296 p-value for nested model: 0.0694574
- best pat: 011 2.2387e-10 chi(nested): 48.135 p-value for nested model: 3.97882e-12
- coeffs: 0.761 0.031 0.209
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_Boncuklu_N ONG.SG 0.001695 2.329591
- details: Iran_GanjDareh_N ONG.SG -0.000614 -0.640710
- details: PPN ONG.SG -0.007871 -10.167372
- dscore: ONG.SG f4: -0.000372 Z: -0.623506
- details: Turkey_Boncuklu_N EHG 0.002808 3.458096
- details: Iran_GanjDareh_N EHG -0.009686 -8.464352
- details: PPN EHG -0.011148 -11.879067
- dscore: EHG f4: -0.000489 Z: -0.725943
- details: Turkey_Boncuklu_N CHG 0.001148 1.403249
- details: Iran_GanjDareh_N CHG 0.003958 3.748308
- details: PPN CHG -0.010848 -12.053411
- dscore: CHG f4: -0.001269 Z: -1.842183
- details: Turkey_Boncuklu_N England_Mesolithic 0.002418 2.477334
- details: Iran_GanjDareh_N England_Mesolithic -0.020702 -16.284788
- details: PPN England_Mesolithic -0.009203 -8.653806
- dscore: England_Mesolithic f4: -0.000718 Z: -0.891818
- details: Turkey_Boncuklu_N Morocco_Iberomaurusian -0.002199 -3.122281
- details: Iran_GanjDareh_N Morocco_Iberomaurusian -0.016057 -17.792547
- details: PPN Morocco_Iberomaurusian 0.006828 8.250792
- dscore: Morocco_Iberomaurusian f4: -0.000741 Z: -1.241350
- details: Turkey_Boncuklu_N IVC -0.000807 -1.152171
- details: Iran_GanjDareh_N IVC 0.009594 10.807411
- details: PPN IVC -0.005817 -7.380516
- dscore: IVC f4: -0.001533 Z: -2.619896
- details: Turkey_Boncuklu_N WSHG 0.001125 1.323921
- details: Iran_GanjDareh_N WSHG 0.000266 0.234594
- details: PPN WSHG -0.008375 -8.880162
- dscore: WSHG f4: -0.000884 Z: -1.259756
- details: Turkey_Boncuklu_N Tarim_EMBA1 0.002297 2.934183
- details: Iran_GanjDareh_N Tarim_EMBA1 0.003489 3.181205
- details: PPN Tarim_EMBA1 -0.008774 -10.132544
- dscore: Tarim_EMBA1 f4: 0.000023 Z: 0.035449
- details: Turkey_Boncuklu_N Israel_Natufian_published -0.003522 -3.105813
- details: Iran_GanjDareh_N Israel_Natufian_published -0.028484 -20.457087
- details: PPN Israel_Natufian_published 0.012617 9.716135
- dscore: Israel_Natufian_published f4: -0.000921 Z: -0.967273
- details: Turkey_Boncuklu_N Spain_ElMiron 0.000086 0.084635
- details: Iran_GanjDareh_N Spain_ElMiron -0.020094 -15.316017
- details: PPN Spain_ElMiron -0.008246 -7.457470
- dscore: Spain_ElMiron f4: -0.002273 Z: -2.699411
- details: Turkey_Boncuklu_N Mongolia_North_N 0.000309 0.416792
- details: Iran_GanjDareh_N Mongolia_North_N -0.000524 -0.537321
- details: PPN Mongolia_North_N -0.005957 -7.420839
- dscore: Mongolia_North_N f4: -0.001025 Z: -1.648862
- gendstat: Mbuti.DG ONG.SG -0.624
- gendstat: Mbuti.DG EHG -0.726
- gendstat: Mbuti.DG CHG -1.842
- gendstat: Mbuti.DG England_Mesolithic -0.892
- gendstat: Mbuti.DG Morocco_Iberomaurusian -1.241
- gendstat: Mbuti.DG IVC -2.620
- gendstat: Mbuti.DG WSHG -1.260
- gendstat: Mbuti.DG Tarim_EMBA1 0.035
- gendstat: Mbuti.DG Israel_Natufian_published -0.967
- gendstat: Mbuti.DG Spain_ElMiron -2.699
- gendstat: Mbuti.DG Mongolia_North_N -1.649
- gendstat: ONG.SG EHG -0.163
- gendstat: ONG.SG CHG -1.220
- gendstat: ONG.SG England_Mesolithic -0.427
- gendstat: ONG.SG Morocco_Iberomaurusian -0.524
- gendstat: ONG.SG IVC -2.015
- gendstat: ONG.SG WSHG -0.733
- gendstat: ONG.SG Tarim_EMBA1 0.595
- gendstat: ONG.SG Israel_Natufian_published -0.537
- gendstat: ONG.SG Spain_ElMiron -2.236
- gendstat: ONG.SG Mongolia_North_N -1.168
- gendstat: EHG CHG -1.043
- gendstat: EHG England_Mesolithic -0.301
- gendstat: EHG Morocco_Iberomaurusian -0.347
- gendstat: EHG IVC -1.675
- gendstat: EHG WSHG -0.616
- gendstat: EHG Tarim_EMBA1 0.845
- gendstat: EHG Israel_Natufian_published -0.419
- gendstat: EHG Spain_ElMiron -2.106
- gendstat: EHG Mongolia_North_N -0.787
- gendstat: CHG England_Mesolithic 0.634
- gendstat: CHG Morocco_Iberomaurusian 0.672
- gendstat: CHG IVC -0.392
- gendstat: CHG WSHG 0.519
- gendstat: CHG Tarim_EMBA1 1.790
- gendstat: CHG Israel_Natufian_published 0.326
- gendstat: CHG Spain_ElMiron -1.084
- gendstat: CHG Mongolia_North_N 0.345
- gendstat: England_Mesolithic Morocco_Iberomaurusian -0.027
- gendstat: England_Mesolithic IVC -1.047
- gendstat: England_Mesolithic WSHG -0.204
- gendstat: England_Mesolithic Tarim_EMBA1 0.916
- gendstat: England_Mesolithic Israel_Natufian_published -0.178
- gendstat: England_Mesolithic Spain_ElMiron -1.786
- gendstat: England_Mesolithic Mongolia_North_N -0.382
- gendstat: Morocco_Iberomaurusian IVC -1.161
- gendstat: Morocco_Iberomaurusian WSHG -0.187
- gendstat: Morocco_Iberomaurusian Tarim_EMBA1 1.060
- gendstat: Morocco_Iberomaurusian Israel_Natufian_published -0.182
- gendstat: Morocco_Iberomaurusian Spain_ElMiron -1.781
- gendstat: Morocco_Iberomaurusian Mongolia_North_N -0.412
- gendstat: IVC WSHG 1.011
- gendstat: IVC Tarim_EMBA1 2.564
- gendstat: IVC Israel_Natufian_published 0.630
- gendstat: IVC Spain_ElMiron -0.911
- gendstat: IVC Mongolia_North_N 0.942
- gendstat: WSHG Tarim_EMBA1 1.575
- gendstat: WSHG Israel_Natufian_published -0.034
- gendstat: WSHG Spain_ElMiron -1.613
- gendstat: WSHG Mongolia_North_N -0.225
- gendstat: Tarim_EMBA1 Israel_Natufian_published -0.892
- gendstat: Tarim_EMBA1 Spain_ElMiron -2.657
- gendstat: Tarim_EMBA1 Mongolia_North_N -1.704
- gendstat: Israel_Natufian_published Spain_ElMiron -1.182
- gendstat: Israel_Natufian_published Mongolia_North_N -0.104
- gendstat: Spain_ElMiron Mongolia_North_N 1.493
- removing /tmp/fsx.2982
- ##end of qpAdm: 9.210 seconds cpu 1.020 Mbytes in use
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