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Legend_9813

Syriac_Christian_Kerala qpAdm

Legend_9813
Apr 28th, 2023 (edited)
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. details: YES
  10. allsnps: YES
  11. inbreed: YES
  12. ## qpAdm version: 1520
  13. seed: -11261564
  14. inbreed set YES
  15. inbreed set YES
  16. tmp: /tmp/fsx.343
  17.  
  18. left pops:
  19. Syriac_Christian_Kerala
  20. Paniya
  21. Indus_lowAASI
  22. Syria_TellQarassa_Umayyad
  23.  
  24. right pops:
  25. Mbuti.DG
  26. EHG
  27. CHG
  28. WSHG
  29. Onge.DG
  30. Turkey_N
  31. Iraq_PPNA
  32. Levant_PPN
  33. CHN_Tarim_EMBA1
  34. Iran_GanjDareh_N
  35. Mongolia_North_N
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 2 dof: 9 chisq: 8.229 tail: 0.511267755 dofdiff: 11 chisqdiff: -8.229 taildiff: 1
  41. B:
  42. scale 1.000 1.000
  43. EHG 0.473 0.889
  44. CHG 0.840 0.936
  45. WSHG 0.099 1.484
  46. Onge.DG -1.319 0.343
  47. Turkey_N 1.444 -0.697
  48. Iraq_PPNA 1.268 0.145
  49. Levant_PPN 1.537 -0.725
  50. CHN_Tarim_EMBA1 -0.127 1.520
  51. Iran_GanjDareh_N 0.729 1.841
  52. Mongolia_North_N -1.039 0.523
  53. Serbia_IronGates_Mesolithic 0.799 -0.094
  54. A:
  55. scale 94.816 205.129
  56. Paniya -0.965 -0.734
  57. Indus_lowAASI 0.644 1.013
  58. Syria_TellQarassa_Umayyad 1.286 -1.197
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 8.229 taildiff: 0.511267755
  64. B:
  65. scale 96.047 111.969 65.537
  66. EHG -0.743 0.945 0.089
  67. CHG -1.269 1.060 0.325
  68. WSHG -0.476 1.140 -0.393
  69. Onge.DG 1.093 -0.844 -1.353
  70. Turkey_N -1.163 0.791 1.566
  71. Iraq_PPNA -1.143 1.279 1.179
  72. Levant_PPN -1.164 0.940 1.711
  73. CHN_Tarim_EMBA1 -0.329 0.925 -0.654
  74. Iran_GanjDareh_N -1.380 1.576 -0.072
  75. Mongolia_North_N 0.905 -0.351 -1.076
  76. Serbia_IronGates_Mesolithic -0.756 0.604 0.734
  77. A:
  78. scale 1.732 1.732 1.732
  79. Paniya 1.732 0.000 0.000
  80. Indus_lowAASI 0.000 1.732 0.000
  81. Syria_TellQarassa_Umayyad 0.000 0.000 1.732
  82.  
  83.  
  84. best coefficients: 0.443 0.449 0.108
  85. totmean: 0.443 0.449 0.108
  86. boot mean: 0.443 0.449 0.108
  87. std. errors: 0.023 0.034 0.021
  88.  
  89. error covariance (* 1,000,000)
  90. 537 -626 90
  91. -626 1150 -524
  92. 90 -524 434
  93.  
  94.  
  95. summ: Syriac_Christian_Kerala 3 0.511268 0.443 0.449 0.108 537 -626 90 1150 -524 ...
  96. 434
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 000 0 9 8.229 0.511268 0.443 0.449 0.108
  100. 001 1 10 33.370 0.000236005 0.416 0.584 0.000
  101. 010 1 10 172.733 0 0.665 0.000 0.335
  102. 100 1 10 263.566 0 0.000 1.071 -0.071 infeasible
  103. 011 2 11 584.928 0 1.000 0.000 0.000
  104. 101 2 11 266.624 0 0.000 1.000 0.000
  105. 110 2 11 1162.796 0 0.000 0.000 1.000
  106. best pat: 000 0.511268 - -
  107. best pat: 001 0.000236005 chi(nested): 25.141 p-value for nested model: 5.32825e-07
  108. best pat: 101 9.14507e-51 chi(nested): 233.254 p-value for nested model: 1.16335e-52
  109.  
  110. coeffs: 0.443 0.449 0.108
  111.  
  112. ## dscore:: f_4(Base, Fit, Rbase, right2)
  113. ## genstat:: f_4(Base, Fit, right1, right2)
  114.  
  115. details: Paniya EHG -0.007732 -6.663224
  116. details: Indus_lowAASI EHG 0.008440 6.444995
  117. details: Syria_TellQarassa_Umayyad EHG 0.001365 0.897781
  118. dscore: EHG f4: 0.000507 Z: 0.462915
  119.  
  120. details: Paniya CHG -0.013208 -9.238982
  121. details: Indus_lowAASI CHG 0.009467 5.984301
  122. details: Syria_TellQarassa_Umayyad CHG 0.004964 2.878424
  123. dscore: CHG f4: -0.001070 Z: -0.798706
  124.  
  125. details: Paniya WSHG -0.004951 -3.395200
  126. details: Indus_lowAASI WSHG 0.010181 6.171077
  127. details: Syria_TellQarassa_Umayyad WSHG -0.005997 -3.265410
  128. dscore: WSHG f4: 0.001726 Z: 1.255541
  129.  
  130. details: Paniya Onge.DG 0.011380 8.385477
  131. details: Indus_lowAASI Onge.DG -0.007542 -4.969517
  132. details: Syria_TellQarassa_Umayyad Onge.DG -0.020647 -12.426072
  133. dscore: Onge.DG f4: -0.000570 Z: -0.451412
  134.  
  135. details: Paniya Turkey_N -0.012105 -11.728438
  136. details: Indus_lowAASI Turkey_N 0.007061 6.099653
  137. details: Syria_TellQarassa_Umayyad Turkey_N 0.023899 17.071607
  138. dscore: Turkey_N f4: 0.000384 Z: 0.396491
  139.  
  140. details: Paniya Iraq_PPNA -0.011903 -6.686949
  141. details: Indus_lowAASI Iraq_PPNA 0.011419 5.884880
  142. details: Syria_TellQarassa_Umayyad Iraq_PPNA 0.017991 8.526095
  143. dscore: Iraq_PPNA f4: 0.001792 Z: 1.052480
  144.  
  145. details: Paniya Levant_PPN -0.012120 -8.461514
  146. details: Indus_lowAASI Levant_PPN 0.008398 5.275811
  147. details: Syria_TellQarassa_Umayyad Levant_PPN 0.026110 14.521985
  148. dscore: Levant_PPN f4: 0.001216 Z: 0.889332
  149.  
  150. details: Paniya CHN_Tarim_EMBA1 -0.003426 -2.588882
  151. details: Indus_lowAASI CHN_Tarim_EMBA1 0.008258 5.453977
  152. details: Syria_TellQarassa_Umayyad CHN_Tarim_EMBA1 -0.009980 -5.797726
  153. dscore: CHN_Tarim_EMBA1 f4: 0.001109 Z: 0.891958
  154.  
  155. details: Paniya Iran_GanjDareh_N -0.014371 -12.025320
  156. details: Indus_lowAASI Iran_GanjDareh_N 0.014074 10.648349
  157. details: Syria_TellQarassa_Umayyad Iran_GanjDareh_N -0.001097 -0.739133
  158. dscore: Iran_GanjDareh_N f4: -0.000173 Z: -0.153603
  159.  
  160. details: Paniya Mongolia_North_N 0.009426 7.671523
  161. details: Indus_lowAASI Mongolia_North_N -0.003136 -2.312988
  162. details: Syria_TellQarassa_Umayyad Mongolia_North_N -0.016414 -10.349283
  163. dscore: Mongolia_North_N f4: 0.000998 Z: 0.877450
  164.  
  165. details: Paniya Serbia_IronGates_Mesolithic -0.007870 -7.048577
  166. details: Indus_lowAASI Serbia_IronGates_Mesolithic 0.005395 4.223313
  167. details: Syria_TellQarassa_Umayyad Serbia_IronGates_Mesolithic 0.011201 7.318757
  168. dscore: Serbia_IronGates_Mesolithic f4: 0.000143 Z: 0.134398
  169.  
  170. gendstat: Mbuti.DG EHG 0.463
  171. gendstat: Mbuti.DG CHG -0.799
  172. gendstat: Mbuti.DG WSHG 1.256
  173. gendstat: Mbuti.DG Onge.DG -0.451
  174. gendstat: Mbuti.DG Turkey_N 0.396
  175. gendstat: Mbuti.DG Iraq_PPNA 1.052
  176. gendstat: Mbuti.DG Levant_PPN 0.889
  177. gendstat: Mbuti.DG CHN_Tarim_EMBA1 0.892
  178. gendstat: Mbuti.DG Iran_GanjDareh_N -0.154
  179. gendstat: Mbuti.DG Mongolia_North_N 0.877
  180. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.134
  181. gendstat: EHG CHG -1.313
  182. gendstat: EHG WSHG 1.144
  183. gendstat: EHG Onge.DG -0.858
  184. gendstat: EHG Turkey_N -0.146
  185. gendstat: EHG Iraq_PPNA 0.792
  186. gendstat: EHG Levant_PPN 0.544
  187. gendstat: EHG CHN_Tarim_EMBA1 0.657
  188. gendstat: EHG Iran_GanjDareh_N -0.617
  189. gendstat: EHG Mongolia_North_N 0.436
  190. gendstat: EHG Serbia_IronGates_Mesolithic -0.513
  191. gendstat: CHG WSHG 1.877
  192. gendstat: CHG Onge.DG 0.339
  193. gendstat: CHG Turkey_N 1.285
  194. gendstat: CHG Iraq_PPNA 1.643
  195. gendstat: CHG Levant_PPN 1.515
  196. gendstat: CHG CHN_Tarim_EMBA1 1.689
  197. gendstat: CHG Iran_GanjDareh_N 0.722
  198. gendstat: CHG Mongolia_North_N 1.488
  199. gendstat: CHG Serbia_IronGates_Mesolithic 1.033
  200. gendstat: WSHG Onge.DG -1.497
  201. gendstat: WSHG Turkey_N -1.091
  202. gendstat: WSHG Iraq_PPNA 0.036
  203. gendstat: WSHG Levant_PPN -0.315
  204. gendstat: WSHG CHN_Tarim_EMBA1 -0.534
  205. gendstat: WSHG Iran_GanjDareh_N -1.368
  206. gendstat: WSHG Mongolia_North_N -0.541
  207. gendstat: WSHG Serbia_IronGates_Mesolithic -1.352
  208. gendstat: Onge.DG Turkey_N 0.774
  209. gendstat: Onge.DG Iraq_PPNA 1.275
  210. gendstat: Onge.DG Levant_PPN 1.123
  211. gendstat: Onge.DG CHN_Tarim_EMBA1 1.214
  212. gendstat: Onge.DG Iran_GanjDareh_N 0.300
  213. gendstat: Onge.DG Mongolia_North_N 1.311
  214. gendstat: Onge.DG Serbia_IronGates_Mesolithic 0.586
  215. gendstat: Turkey_N Iraq_PPNA 0.920
  216. gendstat: Turkey_N Levant_PPN 0.728
  217. gendstat: Turkey_N CHN_Tarim_EMBA1 0.694
  218. gendstat: Turkey_N Iran_GanjDareh_N -0.577
  219. gendstat: Turkey_N Mongolia_North_N 0.565
  220. gendstat: Turkey_N Serbia_IronGates_Mesolithic -0.339
  221. gendstat: Iraq_PPNA Levant_PPN -0.308
  222. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 -0.403
  223. gendstat: Iraq_PPNA Iran_GanjDareh_N -1.197
  224. gendstat: Iraq_PPNA Mongolia_North_N -0.433
  225. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic -1.063
  226. gendstat: Levant_PPN CHN_Tarim_EMBA1 -0.075
  227. gendstat: Levant_PPN Iran_GanjDareh_N -1.024
  228. gendstat: Levant_PPN Mongolia_North_N -0.156
  229. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.859
  230. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N -1.037
  231. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N -0.090
  232. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.995
  233. gendstat: Iran_GanjDareh_N Mongolia_North_N 0.950
  234. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic 0.305
  235. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.762
  236.  
  237. removing /tmp/fsx.343
  238. ##end of qpAdm: 4.024 seconds cpu 1.016 Mbytes in use
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