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- for(int j=0; j<=len-kmer_len; j++)
- {
- std::string kmerstrfromfastq = seqs[i].substr(j, kmer_len);
- Kmer mykmer(kmerstrfromfastq.c_str());
- Kmer lexsmall = mykmer.rep();
- allkmers[MYTHREAD].push_back(lexsmall);
- hlls[MYTHREAD].add((const char*) lexsmall.getBytes(), lexsmall.getNumBytes());
- }
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