> install.packages("rgdal", dependencies = T)
Installing package into ‘/home/u18/mdpillet/R/library’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
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Selection: 1
trying URL 'https://cloud.r-project.org/src/contrib/rgdal_1.3-4.tar.gz'
Content type 'application/x-gzip' length 1664774 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
configure: R_HOME: /cm/shared/uaapps/R/3.4.4/lib64/R
configure: CC: gcc
configure: CXX: g++
configure: C++11 support available
configure: rgdal: 1.3-4
checking for /usr/bin/svnversion... yes
configure: svn revision: 766
checking for gdal-config... /cm/shared/uaapps/gdal/2.3.0/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.3.0
checking C++11 support for GDAL >= 2.3.0... yes
checking GDAL version >= 1.11.4... yes
checking gdal: linking with --libs only... yes
checking GDAL: /cm/shared/uaapps/gdal/2.3.0/share/gdal/pcs.csv readable... yes
configure: pkg-config proj exists, will use it
configure: PROJ version: 4.9.3
checking proj_api.h presence and usability... yes
checking PROJ version >= 4.8.0... yes
checking projects.h presence and usability... yes
checking PROJ.4: epsg found and readable... yes
checking PROJ.4: conus found and readable... no
Note: proj/conus not found
No support available in PROJ4 for NAD grid datum transformations
If required, consider re-installing from source with the contents
of proj-datumgrid-1.<latest>.zip from http://download.osgeo.org/proj/ in nad/.
configure: Package CPP flags:  -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include
configure: Package LIBS:  -L/cm/shared/uaapps/gdal/2.3.0/lib -lgdal -lproj
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c OGR_write.cpp -o OGR_write.o
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c gdal-bindings.cpp -o gdal-bindings.o
gcc -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2  -c init.c -o init.o
gcc -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2  -c inverser.c -o inverser.o
gcc -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2  -c local_stubs.c -o local_stubs.o
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c ogr_geom.cpp -o ogr_geom.o
gcc -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2  -c ogr_polygons.c -o ogr_polygons.o
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c ogr_proj.cpp -o ogr_proj.o
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c ogrdrivers.cpp -o ogrdrivers.o
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c ogrsource.cpp -o ogrsource.o
g++ -std=gnu++11 -I/cm/shared/uaapps/R/3.4.4/lib64/R/include -DNDEBUG -I/cm/shared/uaapps/gdal/2.3.0/include -I/cm/shared/uaapps/proj/4.9.3/include   -I"/home/u18/mdpillet/R/library/sp/include" -I/cm/shared/uaapps/curl/7.49.0/include -I/cm/shared/uaapps/pcre/8.38/include -I/cm/shared/uaapps/xz/5.2.2/include -I/cm/shared/uaapps/bzip2/1.0.6/include -I/cm/shared/uaapps/zlib/1.2.8/include   -fpic  -g -O2 -c projectit.cpp -o projectit.o
g++ -std=gnu++11 -shared -L/cm/shared/uaapps/curl/7.49.0/lib -L/cm/shared/uaapps/pcre/8.38/lib -L/cm/shared/uaapps/xz/5.2.2/lib -L/cm/shared/uaapps/bzip2/1.0.6/lib -L/cm/shared/uaapps/zlib/1.2.8/lib -o rgdal.so OGR_write.o gdal-bindings.o init.o inverser.o local_stubs.o ogr_geom.o ogr_polygons.o ogr_proj.o ogrdrivers.o ogrsource.o projectit.o -L/cm/shared/uaapps/gdal/2.3.0/lib -lgdal -lproj
installing to /home/u18/mdpillet/R/library/rgdal/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error: package or namespace load failed for ‘rgdal’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/u18/mdpillet/R/library/rgdal/libs/rgdal.so':
  /home/u18/mdpillet/R/library/rgdal/libs/rgdal.so: undefined symbol: pj_ctx_fgets
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/u18/mdpillet/R/library/rgdal’

The downloaded source packages are in
        ‘/tmp/RtmpIOLjJQ/downloaded_packages’
Warning message:
In install.packages("rgdal", dependencies = T) :
  installation of package ‘rgdal’ had non-zero exit status