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  1. sudo R CMD INSTALL OpenMx.tar.gz -l /home/martin/.rkward/library/
  2. [sudo] password for martin:
  3. * installing *source* package ‘OpenMx’ ...
  4. checking for gcc... gcc
  5. checking whether the C compiler works... yes
  6. checking for C compiler default output file name... a.out
  7. checking for suffix of executables...
  8. checking whether we are cross compiling... no
  9. checking for suffix of object files... o
  10. checking whether we are using the GNU C compiler... yes
  11. checking whether gcc accepts -g... yes
  12. checking for gcc option to accept ISO C89... none needed
  13. checking for gcc option to support OpenMP... -fopenmp
  14. checking whether gcc is installed... yes
  15. checking build system type... x86_64-unknown-linux-gnu
  16. checking host system type... x86_64-unknown-linux-gnu
  17. checking if gcc accepts -dumpversion option... yes
  18. checking gcc version... 4.7.2
  19. checking for gawk... gawk
  20. checking for inst/npsol/linux/x86_64/gcc4.7/libnpsol.a... yes
  21. configure: creating ./config.status
  22. config.status: creating src/Makevars
  23. config.status: executing src/omxSymbolTable.h commands
  24. config.status: executing src/omxSymbolTable.c commands
  25. ** libs
  26. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c merge.c -o merge.o
  27. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c npsolWrap.c -o npsolWrap.o
  28. npsolWrap.c: In Funktion »constraintFunction_«:
  29. npsolWrap.c:810:19: Warnung: Variable »size« gesetzt, aber nicht verwendet [-Wunused-but-set-variable]
  30. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxAlgebra.c -o omxAlgebra.o
  31. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxAlgebraFunctions.c -o omxAlgebraFunctions.o
  32. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxAlgebraObjective.c -o omxAlgebraObjective.o
  33. gfortran   -fpic  -g -O2  -c omxBLAS.f -o omxBLAS.o
  34. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxData.c -o omxData.o
  35. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxExponential.c -o omxExponential.o
  36. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxExportBackendState.c -o omxExportBackendState.o
  37. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxFIMLObjective.c -o omxFIMLObjective.o
  38. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxFIMLSingleIteration.c -o omxFIMLSingleIteration.o
  39. omxFIMLSingleIteration.c: In Funktion »omxFIMLSingleIterationJoint«:
  40. omxFIMLSingleIteration.c:573:71: Warnung: »determinant« könnte in dieser Funktion uninitialisiert verwendet werden [-Wmaybe-uninitialized]
  41. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxHessianCalculation.c -o omxHessianCalculation.o
  42. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxImportFrontendState.c -o omxImportFrontendState.o
  43. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxLISRELObjective.c -o omxLISRELObjective.o
  44. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxMLObjective.c -o omxMLObjective.o
  45. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxMatrix.c -o omxMatrix.o
  46. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxNPSOLSpecific.c -o omxNPSOLSpecific.o
  47. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxObjective.c -o omxObjective.o
  48. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxObjectiveTable.c -o omxObjectiveTable.o
  49. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxOptimizer.c -o omxOptimizer.o
  50. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxRAMObjective.c -o omxRAMObjective.o
  51. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxRObjective.c -o omxRObjective.o
  52. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxRowObjective.c -o omxRowObjective.o
  53. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxSadmvnWrapper.c -o omxSadmvnWrapper.o
  54. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxState.c -o omxState.o
  55. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxSymbolTable.c -o omxSymbolTable.o
  56. gcc -std=gnu99 -I/usr/local/lib/R/include -DNDEBUG  -I/usr/local/include   -Wall -fopenmp   -fpic  -g -O2  -c omxWLSObjective.c -o omxWLSObjective.o
  57. gfortran   -fpic  -g -O2  -c sadmvn.f -o sadmvn.o
  58. gcc -std=gnu99 -shared -L/usr/local/lib -o OpenMx.so merge.o npsolWrap.o omxAlgebra.o omxAlgebraFunctions.o omxAlgebraObjective.o omxBLAS.o omxData.o omxExponential.o omxExportBackendState.o omxFIMLObjective.o omxFIMLSingleIteration.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELObjective.o omxMLObjective.o omxMatrix.o omxNPSOLSpecific.o omxObjective.o omxObjectiveTable.o omxOptimizer.o omxRAMObjective.o omxRObjective.o omxRowObjective.o omxSadmvnWrapper.o omxState.o omxSymbolTable.o omxWLSObjective.o sadmvn.o -lgfortran -lm -lquadmath -L/usr/local/lib/R/lib -lRblas -L/usr/local/lib/R/lib -lRlapack -fopenmp -lnpsol -L../inst/npsol/linux/x86_64/gcc4.7 -lgfortran -lm -lquadmath
  59. installing to /home/martin/.rkward/library/OpenMx/libs
  60. ** R
  61. ** data
  62. *** moving datasets to lazyload DB
  63. ** demo
  64. ** inst
  65. ** preparing package for lazy loading
  66. Creating a generic function for ‘print’ from package ‘base’ in package ‘OpenMx’
  67. Creating a generic function for ‘nrow’ from package ‘base’ in package ‘OpenMx’
  68. Creating a generic function for ‘ncol’ from package ‘base’ in package ‘OpenMx’
  69. Creating a generic function for ‘summary’ from package ‘base’ in package ‘OpenMx’
  70. ** help
  71. *** installing help indices
  72. ** building package indices
  73. ** testing if installed package can be loaded
  75. * DONE (OpenMx)
  76. [martin@archstation R]$
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