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misnomer001

ukr_adm = ukr_n + chg

misnomer001
May 21st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1891190124
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Ukraine_N_adm
  11. Ukraine_N
  12. Georgia_Kotias.SG
  13.  
  14. right pops:
  15. Cameroon_SMA.DG
  16. Morocco_Iberomaurusian
  17. Russia_Ust_Ishim.DG
  18. Russia_Kostenki14.SG
  19. Russia_MA1_HG.SG
  20. Boisman_MN
  21. ONG.SG
  22. Italy_North_Villabruna_HG
  23. Czech_Vestonice16
  24. Iberia_ElMiron
  25. Israel_Natufian
  26. Georgia_Satsurblia.SG
  27. Iran_GanjDareh_N
  28. Anatolia_Epipaleolithic
  29.  
  30. 0 Ukraine_N_adm 5
  31. 1 Ukraine_N 10
  32. 2 Georgia_Kotias.SG 1
  33. 3 Cameroon_SMA.DG 1
  34. 4 Morocco_Iberomaurusian 6
  35. 5 Russia_Ust_Ishim.DG 1
  36. 6 Russia_Kostenki14.SG 1
  37. 7 Russia_MA1_HG.SG 1
  38. 8 Boisman_MN 12
  39. 9 ONG.SG 6
  40. 10 Italy_North_Villabruna_HG 1
  41. 11 Czech_Vestonice16 1
  42. 12 Iberia_ElMiron 1
  43. 13 Israel_Natufian 6
  44. 14 Georgia_Satsurblia.SG 1
  45. 15 Iran_GanjDareh_N 8
  46. 16 Anatolia_Epipaleolithic 1
  47. jackknife block size: 0.050
  48. snps: 1150507 indivs: 63
  49. number of blocks for block jackknife: 713
  50. ## ncols: 1150507
  51. coverage: Ukraine_N_adm 919905
  52. coverage: Ukraine_N 969989
  53. coverage: Georgia_Kotias.SG 1149097
  54. coverage: Cameroon_SMA.DG 1140138
  55. coverage: Morocco_Iberomaurusian 1101342
  56. coverage: Russia_Ust_Ishim.DG 1062044
  57. coverage: Russia_Kostenki14.SG 1048972
  58. coverage: Russia_MA1_HG.SG 805960
  59. coverage: Boisman_MN 1031750
  60. coverage: ONG.SG 1143397
  61. coverage: Italy_North_Villabruna_HG 883779
  62. coverage: Czech_Vestonice16 732091
  63. coverage: Iberia_ElMiron 626974
  64. coverage: Israel_Natufian 535079
  65. coverage: Georgia_Satsurblia.SG 801311
  66. coverage: Iran_GanjDareh_N 1057358
  67. coverage: Anatolia_Epipaleolithic 848431
  68. dof (jackknife): 619.878
  69. numsnps used: 1150507
  70. codimension 1
  71. f4info:
  72. f4rank: 1 dof: 12 chisq: 9.054 tail: 0.69828542 dofdiff: 14 chisqdiff: -9.054 taildiff: 1
  73. B:
  74. scale 1.000
  75. Morocco_Iberomaurusian 0.330
  76. Russia_Ust_Ishim.DG 0.308
  77. Russia_Kostenki14.SG 0.675
  78. Russia_MA1_HG.SG 0.926
  79. Boisman_MN 0.449
  80. ONG.SG 0.226
  81. Italy_North_Villabruna_HG 2.418
  82. Czech_Vestonice16 0.974
  83. Iberia_ElMiron 1.273
  84. Israel_Natufian 0.385
  85. Georgia_Satsurblia.SG -1.450
  86. Iran_GanjDareh_N -0.551
  87. Anatolia_Epipaleolithic 0.510
  88. A:
  89. scale 263.486
  90. Ukraine_N 0.037
  91. Georgia_Kotias.SG -1.414
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 9.054 taildiff: 0.69828542
  97. B:
  98. scale 4300.971 183.399
  99. Morocco_Iberomaurusian -0.802 -0.352
  100. Russia_Ust_Ishim.DG -0.771 -0.331
  101. Russia_Kostenki14.SG 0.192 -0.676
  102. Russia_MA1_HG.SG 0.046 -0.935
  103. Boisman_MN -0.831 -0.474
  104. ONG.SG -1.211 -0.270
  105. Italy_North_Villabruna_HG 0.277 -2.413
  106. Czech_Vestonice16 -1.495 -1.021
  107. Iberia_ElMiron 0.884 -1.254
  108. Israel_Natufian 0.154 -0.378
  109. Georgia_Satsurblia.SG -1.581 1.412
  110. Iran_GanjDareh_N -1.584 0.504
  111. Anatolia_Epipaleolithic -1.200 -0.556
  112. A:
  113. scale 1.414 1.414
  114. Ukraine_N 1.414 0.000
  115. Georgia_Kotias.SG 0.000 1.414
  116.  
  117.  
  118. best coefficients: 0.974 0.026
  119. Jackknife mean: 0.974149967 0.025850033
  120. std. errors: 0.012 0.012
  121.  
  122. error covariance (* 1,000,000)
  123. 155 -155
  124. -155 155
  125.  
  126.  
  127. summ: Ukraine_N_adm 2 0.698285 0.974 0.026 155 -155 155
  128.  
  129. fixed pat wt dof chisq tail prob
  130. 00 0 12 9.054 0.698285 0.974 0.026
  131. 01 1 13 13.113 0.439144 1.000 0.000
  132. 10 1 13 1472.726 0 0.000 1.000
  133. best pat: 00 0.698285 - -
  134. best pat: 01 0.439144 chi(nested): 4.058 p-value for nested model: 0.0439519
  135.  
  136. coeffs: 0.974 0.026
  137.  
  138. ## dscore:: f_4(Base, Fit, Rbase, right2)
  139. ## genstat:: f_4(Base, Fit, right1, right2)
  140.  
  141. details: Ukraine_N Morocco_Iberomaurusian -0.000186 -0.924730
  142. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.001920 -5.135132
  143. dscore: Morocco_Iberomaurusian f4: -0.000231 Z: -1.158216
  144.  
  145. details: Ukraine_N Russia_Ust_Ishim.DG -0.000179 -0.809464
  146. details: Georgia_Kotias.SG Russia_Ust_Ishim.DG -0.001805 -4.084224
  147. dscore: Russia_Ust_Ishim.DG f4: -0.000221 Z: -1.006972
  148.  
  149. details: Ukraine_N Russia_Kostenki14.SG 0.000045 0.170894
  150. details: Georgia_Kotias.SG Russia_Kostenki14.SG -0.003688 -7.593474
  151. dscore: Russia_Kostenki14.SG f4: -0.000052 Z: -0.200451
  152.  
  153. details: Ukraine_N Russia_MA1_HG.SG 0.000011 0.042253
  154. details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.005096 -10.903906
  155. dscore: Russia_MA1_HG.SG f4: -0.000121 Z: -0.479799
  156.  
  157. details: Ukraine_N Boisman_MN -0.000193 -0.887775
  158. details: Georgia_Kotias.SG Boisman_MN -0.002586 -6.396636
  159. dscore: Boisman_MN f4: -0.000255 Z: -1.183104
  160.  
  161. details: Ukraine_N ONG.SG -0.000281 -1.320879
  162. details: Georgia_Kotias.SG ONG.SG -0.001475 -3.539209
  163. dscore: ONG.SG f4: -0.000312 Z: -1.474468
  164.  
  165. details: Ukraine_N Italy_North_Villabruna_HG 0.000064 0.219229
  166. details: Georgia_Kotias.SG Italy_North_Villabruna_HG -0.013158 -24.829560
  167. dscore: Italy_North_Villabruna_HG f4: -0.000277 Z: -0.950271
  168.  
  169. details: Ukraine_N Czech_Vestonice16 -0.000348 -1.438144
  170. details: Georgia_Kotias.SG Czech_Vestonice16 -0.005568 -12.117677
  171. dscore: Czech_Vestonice16 f4: -0.000482 Z: -2.013423
  172.  
  173. details: Ukraine_N Iberia_ElMiron 0.000206 0.877000
  174. details: Georgia_Kotias.SG Iberia_ElMiron -0.006835 -15.650930
  175. dscore: Iberia_ElMiron f4: 0.000024 Z: 0.103054
  176.  
  177. details: Ukraine_N Israel_Natufian 0.000036 0.173728
  178. details: Georgia_Kotias.SG Israel_Natufian -0.002063 -5.793857
  179. dscore: Israel_Natufian f4: -0.000018 Z: -0.089118
  180.  
  181. details: Ukraine_N Georgia_Satsurblia.SG -0.000368 -1.579948
  182. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.007696 16.548178
  183. dscore: Georgia_Satsurblia.SG f4: -0.000160 Z: -0.692647
  184.  
  185. details: Ukraine_N Iran_GanjDareh_N -0.000368 -1.810131
  186. details: Georgia_Kotias.SG Iran_GanjDareh_N 0.002750 7.152085
  187. dscore: Iran_GanjDareh_N f4: -0.000288 Z: -1.426316
  188.  
  189. details: Ukraine_N Anatolia_Epipaleolithic -0.000279 -1.074609
  190. details: Georgia_Kotias.SG Anatolia_Epipaleolithic -0.003033 -6.324324
  191. dscore: Anatolia_Epipaleolithic f4: -0.000350 Z: -1.360861
  192.  
  193. gendstat: Cameroon_SMA.DG Morocco_Iberomaurusian -1.158
  194. gendstat: Cameroon_SMA.DG Russia_Ust_Ishim.DG -1.007
  195. gendstat: Cameroon_SMA.DG Russia_Kostenki14.SG -0.200
  196. gendstat: Cameroon_SMA.DG Russia_MA1_HG.SG -0.480
  197. gendstat: Cameroon_SMA.DG Boisman_MN -1.183
  198. gendstat: Cameroon_SMA.DG ONG.SG -1.474
  199. gendstat: Cameroon_SMA.DG Italy_North_Villabruna_HG -0.950
  200. gendstat: Cameroon_SMA.DG Czech_Vestonice16 -2.013
  201. gendstat: Cameroon_SMA.DG Iberia_ElMiron 0.103
  202. gendstat: Cameroon_SMA.DG Israel_Natufian -0.089
  203. gendstat: Cameroon_SMA.DG Georgia_Satsurblia.SG -0.693
  204. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -1.426
  205. gendstat: Cameroon_SMA.DG Anatolia_Epipaleolithic -1.361
  206. gendstat: Morocco_Iberomaurusian Russia_Ust_Ishim.DG 0.042
  207. gendstat: Morocco_Iberomaurusian Russia_Kostenki14.SG 0.700
  208. gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG 0.417
  209. gendstat: Morocco_Iberomaurusian Boisman_MN -0.114
  210. gendstat: Morocco_Iberomaurusian ONG.SG -0.384
  211. gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG -0.164
  212. gendstat: Morocco_Iberomaurusian Czech_Vestonice16 -1.020
  213. gendstat: Morocco_Iberomaurusian Iberia_ElMiron 1.053
  214. gendstat: Morocco_Iberomaurusian Israel_Natufian 0.971
  215. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.294
  216. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -0.277
  217. gendstat: Morocco_Iberomaurusian Anatolia_Epipaleolithic -0.463
  218. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.625
  219. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.363
  220. gendstat: Russia_Ust_Ishim.DG Boisman_MN -0.151
  221. gendstat: Russia_Ust_Ishim.DG ONG.SG -0.408
  222. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -0.191
  223. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -0.990
  224. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron 0.923
  225. gendstat: Russia_Ust_Ishim.DG Israel_Natufian 0.801
  226. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.236
  227. gendstat: Russia_Ust_Ishim.DG Iran_GanjDareh_N -0.293
  228. gendstat: Russia_Ust_Ishim.DG Anatolia_Epipaleolithic -0.451
  229. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.246
  230. gendstat: Russia_Kostenki14.SG Boisman_MN -0.812
  231. gendstat: Russia_Kostenki14.SG ONG.SG -1.017
  232. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG -0.743
  233. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -1.566
  234. gendstat: Russia_Kostenki14.SG Iberia_ElMiron 0.273
  235. gendstat: Russia_Kostenki14.SG Israel_Natufian 0.125
  236. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.381
  237. gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -0.947
  238. gendstat: Russia_Kostenki14.SG Anatolia_Epipaleolithic -1.005
  239. gendstat: Russia_MA1_HG.SG Boisman_MN -0.538
  240. gendstat: Russia_MA1_HG.SG ONG.SG -0.774
  241. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG -0.500
  242. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 -1.235
  243. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 0.509
  244. gendstat: Russia_MA1_HG.SG Israel_Natufian 0.378
  245. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -0.137
  246. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N -0.682
  247. gendstat: Russia_MA1_HG.SG Anatolia_Epipaleolithic -0.748
  248. gendstat: Boisman_MN ONG.SG -0.323
  249. gendstat: Boisman_MN Italy_North_Villabruna_HG -0.079
  250. gendstat: Boisman_MN Czech_Vestonice16 -0.923
  251. gendstat: Boisman_MN Iberia_ElMiron 1.143
  252. gendstat: Boisman_MN Israel_Natufian 1.055
  253. gendstat: Boisman_MN Georgia_Satsurblia.SG 0.398
  254. gendstat: Boisman_MN Iran_GanjDareh_N -0.177
  255. gendstat: Boisman_MN Anatolia_Epipaleolithic -0.374
  256. gendstat: ONG.SG Italy_North_Villabruna_HG 0.124
  257. gendstat: ONG.SG Czech_Vestonice16 -0.694
  258. gendstat: ONG.SG Iberia_ElMiron 1.397
  259. gendstat: ONG.SG Israel_Natufian 1.252
  260. gendstat: ONG.SG Georgia_Satsurblia.SG 0.617
  261. gendstat: ONG.SG Iran_GanjDareh_N 0.125
  262. gendstat: ONG.SG Anatolia_Epipaleolithic -0.146
  263. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -0.688
  264. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 1.030
  265. gendstat: Italy_North_Villabruna_HG Israel_Natufian 0.890
  266. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG 0.384
  267. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -0.039
  268. gendstat: Italy_North_Villabruna_HG Anatolia_Epipaleolithic -0.238
  269. gendstat: Czech_Vestonice16 Iberia_ElMiron 2.006
  270. gendstat: Czech_Vestonice16 Israel_Natufian 1.836
  271. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 1.161
  272. gendstat: Czech_Vestonice16 Iran_GanjDareh_N 0.798
  273. gendstat: Czech_Vestonice16 Anatolia_Epipaleolithic 0.464
  274. gendstat: Iberia_ElMiron Israel_Natufian -0.166
  275. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG -0.666
  276. gendstat: Iberia_ElMiron Iran_GanjDareh_N -1.271
  277. gendstat: Iberia_ElMiron Anatolia_Epipaleolithic -1.366
  278. gendstat: Israel_Natufian Georgia_Satsurblia.SG -0.561
  279. gendstat: Israel_Natufian Iran_GanjDareh_N -1.207
  280. gendstat: Israel_Natufian Anatolia_Epipaleolithic -1.286
  281. gendstat: Georgia_Satsurblia.SG Iran_GanjDareh_N -0.582
  282. gendstat: Georgia_Satsurblia.SG Anatolia_Epipaleolithic -0.676
  283. gendstat: Iran_GanjDareh_N Anatolia_Epipaleolithic -0.251
  284.  
  285. ##end of qpAdm: 367.709 seconds cpu 1386.553 Mbytes in use
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