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MultiFit - Chimera - Libfftw3.so.3

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Jun 26th, 2017
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  1. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  2. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  3. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  4. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  5. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  6. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  7. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  8. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  9. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  10. Wrote C:\Users\Rob\Documents\UniMasters\Project\pm.B99990001.pdb
  11. Web Service: MultiFit is a Python wrapper that calls cn_MultiFit in IMP for protein structure fitting into cryoEM data with cyclic symmetry.
  12. Opal service URL: http://webservices.rbvi.ucsf.edu/opal2/services/MultiFitWebService
  13. Opal job URL: http://webservices.rbvi.ucsf.edu/appMultiFitWebService14985070848841083973229
  14. Running MultiFit: pm.pdb.B99990001.pdb... to FoXS-EM failed; see Reply Log for more information
  15.  
  16. Application stderr
  17. -----
  18. Traceback (most recent call last):
  19. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/generate_assembly_input.py", line 2, in <module>
  20. import IMP.multifit
  21. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  22. _IMP_multifit = swig_import_helper()
  23. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  24. import _IMP_multifit
  25. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  26. Traceback (most recent call last):
  27. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/create_all_surfaces.py", line 2, in <module>
  28. import IMP.multifit
  29. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  30. _IMP_multifit = swig_import_helper()
  31. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  32. import _IMP_multifit
  33. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  34. Traceback (most recent call last):
  35. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/generate_assembly_anchor_graph.py", line 3, in <module>
  36. import IMP.multifit
  37. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  38. _IMP_multifit = swig_import_helper()
  39. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  40. import _IMP_multifit
  41. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  42. Traceback (most recent call last):
  43. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/run_fitting_fft.py", line 2, in <module>
  44. import IMP.multifit
  45. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  46. _IMP_multifit = swig_import_helper()
  47. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  48. import _IMP_multifit
  49. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  50. Traceback (most recent call last):
  51. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/generate_indexes_from_fitting_solutions.py", line 2, in <module>
  52. import IMP.multifit
  53. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  54. _IMP_multifit = swig_import_helper()
  55. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  56. import _IMP_multifit
  57. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  58. Traceback (most recent call last):
  59. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/create_auto_proteomics_file.py", line 6, in <module>
  60. import IMP.multifit
  61. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  62. _IMP_multifit = swig_import_helper()
  63. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  64. import _IMP_multifit
  65. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  66. Traceback (most recent call last):
  67. File "/home/socr/a/yz/local/imp-repository/modules/multifit2/bin/align_proteomics_em_atomic_plan.py", line 3, in <module>
  68. import IMP.multifit
  69. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 25, in <module>
  70. _IMP_multifit = swig_import_helper()
  71. File "/home/socr/a/yz/local/imp-debug/build/lib/IMP/multifit/__init__.py", line 17, in swig_import_helper
  72. import _IMP_multifit
  73. ImportError: libfftw3.so.3: cannot open shared object file: No such file or directory
  74. Traceback (most recent call last):
  75. File "/usr/local/opal-local/bin/multifitWS.py", line 438, in <module>
  76. main()
  77. File "/usr/local/opal-local/bin/multifitWS.py", line 46, in main
  78. VersionMap[cf["version"]](cf)
  79. File "/usr/local/opal-local/bin/multifitWS.py", line 98, in v1_run
  80. asymWriteSolution(cf)
  81. File "/usr/local/opal-local/bin/multifitWS.py", line 411, in asymWriteSolution
  82. raise RuntimeError("Unable to find file combinations.output")
  83. RuntimeError: Unable to find file combinations.output
  84. -----
  85. Application stdout
  86. -----
  87. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/generate_assembly_input.py -i FoXS-EM.asmb.input -m FoXS-EM.asmb.model -- FoXS-EM InputPDBsList.dat 10 FoXS-EM.mrc 10.0 5.000000 0.0470419268847 -51.819000 -114.422997 -41.984001
  88.  
  89. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/create_all_surfaces.py FoXS-EM.asmb.input
  90.  
  91. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/generate_assembly_anchor_graph.py FoXS-EM.asmb.input FoXS-EM.asmb.anchors
  92.  
  93. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/run_fitting_fft.py -p FoXS-EM.multifit.param FoXS-EM.asmb.input -a 15 -c 1
  94.  
  95. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/generate_indexes_from_fitting_solutions.py FoXS-EM FoXS-EM.asmb.input 3
  96.  
  97. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/create_auto_proteomics_file.py FoXS-EM.asmb.input FoXS-EM.asmb.anchors.txt FoXS-EM.proteomics.input
  98.  
  99. ==>Now executing: /home/socr/a/yz/local/imp-debug/tools/imppy.sh python /home/socr/a/yz/local/imp-repository/modules/multifit2/bin/align_proteomics_em_atomic_plan.py -m 10 FoXS-EM.asmb.input FoXS-EM.proteomics.input FoXS-EM.indexes.mapping.input FoXS-EM.alignment.param FoXS-EM.docking.param combinations.output scores.output
  100.  
  101. -----
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