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ComerDuncan

build of Hilbert after deactivation of mpich

ComerDuncan
May 20th, 2015
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  1. Using configuration: sim
  2. Building sim
  3. Cactus - version: 4.2.3
  4. Building configuration sim
  5. Checking status of thorn CoordBase
  6. Checking status of thorn Boundary
  7. Checking status of thorn ADMCoupling
  8. Checking status of thorn ADMMacros
  9. Checking status of thorn ADMMass
  10. Checking status of thorn AEILocalInterp
  11. Checking status of thorn zlib
  12. Checking status of thorn BLAS
  13. Checking status of thorn Fortran
  14. Checking status of thorn CycleClock
  15. Checking status of thorn Vectors
  16. Checking status of thorn IOUtil
  17. Checking status of thorn CarpetProlongateTest
  18. Checking status of thorn CarpetRegridTest
  19. Checking status of thorn CarpetTracker
  20. Checking status of thorn Constants
  21. Checking status of thorn CoordGauge
  22. Checking status of thorn DemoInterp
  23. Checking status of thorn SphericalSurface
  24. Checking status of thorn DistortedBHIVP
  25. Checking status of thorn EOS_Base
  26. Checking status of thorn EOS_IdealFluid
  27. Checking status of thorn EinsteinExact_Test
  28. Checking status of thorn EllBase
  29. Checking status of thorn Exact
  30. Checking status of thorn Extract
  31. Checking status of thorn FFTW3
  32. Checking status of thorn FleshInfo
  33. Checking status of thorn GSL
  34. Checking status of thorn GenericFD
  35. Checking status of thorn Socket
  36. Checking status of thorn HelloWorld
  37. Checking status of thorn HighOrderWaveTest
  38. Checking status of thorn HydroBase
  39. Checking status of thorn Hydro_InitExcision
  40. Checking status of thorn IDAnalyticBH
  41. Checking status of thorn IDAxiBrillBH
  42. Checking status of thorn IDAxiOddBrillBH
  43. Checking status of thorn IDConstraintViolate
  44. Checking status of thorn IDFileADM
  45. Checking status of thorn IDLinearWaves
  46. Checking status of thorn IDScalarWave
  47. Checking status of thorn IDScalarWaveC
  48. Checking status of thorn IDScalarWaveCXX
  49. Checking status of thorn IDScalarWaveElliptic
  50. Checking status of thorn IDWaveMoL
  51. Checking status of thorn IOASCII
  52. Checking status of thorn IOBasic
  53. Checking status of thorn libjpeg
  54. Checking status of thorn InitBase
  55. Checking status of thorn InterpToArray
  56. Checking status of thorn LAPACK
  57. Checking status of thorn LocalInterp
  58. Checking status of thorn LocalInterp2
  59. Checking status of thorn LocalReduce
  60. Checking status of thorn ML_BSSN_Test
  61. Checking status of thorn ML_CCZ4_Test
  62. Checking status of thorn ML_WaveToy_Test
  63. Checking status of thorn MoL
  64. Checking status of thorn NaNCatcher
  65. Checking status of thorn NaNChecker
  66. Checking status of thorn NewRad
  67. Checking status of thorn Nice
  68. Checking status of thorn Noise
  69. Checking status of thorn Norms
  70. Checking status of thorn NullDecomp
  71. Checking status of thorn NullGrid
  72. Checking status of thorn NullVars
  73. Checking status of thorn OpenSSL
  74. Checking status of thorn Outflow
  75. Checking status of thorn PAPI
  76. Checking status of thorn TATelliptic
  77. Checking status of thorn PunctureTracker
  78. Checking status of thorn TGRtensor
  79. Checking status of thorn ReductionTest
  80. Checking status of thorn ReductionTest2
  81. Checking status of thorn ReductionTest3
  82. Checking status of thorn ReflectionSymmetry
  83. Checking status of thorn RegridSyncTest
  84. Checking status of thorn RotatingDBHIVP
  85. Checking status of thorn SampleBoundary
  86. Checking status of thorn SampleIO
  87. Checking status of thorn SetMask_SphericalSurface
  88. Checking status of thorn SlabTest
  89. Checking status of thorn StaticConformal
  90. Checking status of thorn SummationByParts
  91. Checking status of thorn SymBase
  92. Checking status of thorn SystemStatistics
  93. Checking status of thorn TerminationTrigger
  94. Checking status of thorn TestArrays
  95. Checking status of thorn TestComplex
  96. Checking status of thorn TestCoordinates
  97. Checking status of thorn TestFortranCrayPointers
  98. Checking status of thorn TestFortranDependencies2
  99. Checking status of thorn TestFpointerNULL
  100. Checking status of thorn TestFreeF90
  101. Checking status of thorn TestGlobalReduce
  102. Checking status of thorn TestInclude1
  103. Checking status of thorn TestInclude2
  104. Checking status of thorn TestLocalInterp2
  105. Checking status of thorn TestLocalReduce
  106. Checking status of thorn TestLoop
  107. Checking status of thorn TestMath
  108. Checking status of thorn TestMoL
  109. Checking status of thorn TestPar
  110. Checking status of thorn TestReduce
  111. Checking status of thorn TestSchedule
  112. Checking status of thorn TestStrings
  113. Checking status of thorn TestTable
  114. Checking status of thorn TestTimers
  115. Checking status of thorn TestTypes
  116. Checking status of thorn Time
  117. Checking status of thorn TimerInfo
  118. Checking status of thorn TmunuBase
  119. Checking status of thorn Trigger
  120. Checking status of thorn TwoPunctures
  121. Checking status of thorn WaveBinarySource
  122. Checking status of thorn WaveToy1DF77
  123. Checking status of thorn WaveToy2DF77
  124. Checking status of thorn WaveToyExtra
  125. Checking status of thorn CactusBindings
  126. Checking status of thorn CartGrid3D
  127. Checking status of thorn hwloc
  128. Checking status of thorn SpaceMask
  129. Checking status of thorn CalcK
  130. Checking status of thorn LoopControl
  131. Checking status of thorn Cartoon2D
  132. Checking status of thorn Dissipation
  133. Checking status of thorn EHFinder
  134. Checking status of thorn EOS_Polytrope
  135. Checking status of thorn EllSOR
  136. Checking status of thorn GaugeWave
  137. Checking status of thorn Hydro_Analysis
  138. Checking status of thorn IDBrillData
  139. Checking status of thorn IOJpeg
  140. Checking status of thorn KerrSchild
  141. Checking status of thorn LORENE
  142. Checking status of thorn ML_ADMConstraints
  143. Checking status of thorn ML_ADMQuantities
  144. Checking status of thorn ML_BSSN
  145. Checking status of thorn ML_BSSN_Helper
  146. Checking status of thorn ML_CCZ4
  147. Checking status of thorn ML_CCZ4_Helper
  148. Checking status of thorn ML_WaveToy
  149. Checking status of thorn Meudon_Bin_BH
  150. Checking status of thorn Meudon_Bin_NS
  151. Checking status of thorn Meudon_Mag_NS
  152. Checking status of thorn Minkowski
  153. Checking status of thorn ModifiedSchwarzschildBL
  154. Checking status of thorn NullInterp
  155. Checking status of thorn Poisson
  156. Checking status of thorn ShiftedGaugeWave
  157. Checking status of thorn TOVSolver
  158. Checking status of thorn TestFortranDependencies1
  159. Checking status of thorn TestLoopControl
  160. Checking status of thorn Vaidya2
  161. Checking status of thorn WaveMoL
  162. Checking status of thorn WaveToyC
  163. Checking status of thorn WaveToyCXX
  164. Checking status of thorn WaveToyF77
  165. Checking status of thorn WaveToyF90
  166. Checking status of thorn WaveToyFreeF90
  167. Checking status of thorn WeylScal4
  168. Checking status of thorn ADMAnalysis
  169. Checking status of thorn ADMBase
  170. Checking status of thorn AHFinder
  171. Checking status of thorn MPI
  172. Checking status of thorn CarpetMask
  173. Checking status of thorn EOS_Hybrid
  174. Checking status of thorn Formaline
  175. Checking status of thorn HTTPD
  176. Checking status of thorn PUGH
  177. Checking status of thorn MemSpeed
  178. Checking status of thorn NoMPI
  179. Checking status of thorn NullEvolve
  180. Checking status of thorn NullNews
  181. Checking status of thorn PUGHInterp
  182. Checking status of thorn PUGHReduce
  183. Checking status of thorn PUGHSlab
  184. Checking status of thorn Slab
  185. Checking status of thorn QuasiLocalMeasures
  186. Checking status of thorn SystemTopology
  187. Checking status of thorn TimerReport
  188. Checking status of thorn Cactus
  189. Checking status of thorn HDF5
  190. Checking status of thorn CarpetLib
  191. Checking status of thorn EOS_Omni
  192. Checking status of thorn HTTPDExtra
  193. Checking status of thorn IOHDF5Util
  194. Checking status of thorn Multipole
  195. Checking status of thorn NullConstr
  196. Checking status of thorn NullExact
  197. Checking status of thorn NullPsiInt
  198. Checking status of thorn NullSHRExtract
  199. Checking status of thorn Periodic
  200. Checking status of thorn RotatingSymmetry180
  201. Checking status of thorn RotatingSymmetry90
  202. Checking status of thorn SphericalHarmonicDecomp
  203. Checking status of thorn SphericalHarmonicRecon
  204. Checking status of thorn AHFinderDirect
  205. Checking status of thorn Timers
  206. Checking status of thorn GRHydro_InitData
  207. Checking status of thorn IOHDF5
  208. Checking status of thorn Carpet
  209. Checking status of thorn CarpetEvolutionMask
  210. Checking status of thorn CarpetIOASCII
  211. Checking status of thorn CarpetIOBasic
  212. Checking status of thorn CarpetIOHDF5
  213. Checking status of thorn CarpetIOScalar
  214. Checking status of thorn CarpetIntegrateTest
  215. Checking status of thorn CarpetInterp
  216. Checking status of thorn CarpetInterp2
  217. Checking status of thorn CarpetReduce
  218. Checking status of thorn CarpetRegrid
  219. Checking status of thorn CarpetRegrid2
  220. Checking status of thorn CarpetSlab
  221. Checking status of thorn GRHydro
  222. Checking status of thorn NoExcision
  223. Checking status of thorn PeriodicCarpet
  224. Checking status of thorn TestCarpetGridInfo
  225. Formaline: Committing source tree to git repository...
  226. Formaline: Created git tag build-sim-comermacproretina.attlocal.net-comerduncan-2015.05.20-16.28.01-71392
  227. Formaline: Updated git branch config-sim-comermacproretina.attlocal.net-Users-comerduncan-Cactus
  228. Formaline: Pushing source tree to master git repository...
  229. Formaline: Pushing to local repository /Users/comerduncan/Cactus/../CactusSourceJar.git...
  230. Formaline: Done.
  231. Formaline: (Formaline has finished updating the git repositories.
  232. Formaline: If the build process seems to hang, some other command
  233. Formaline: is still running, e.g. the final link stage.)
  234. ________________________________________________________________________
  235. Creating cactus_sim in /Users/comerduncan/Cactus/exe from EinsteinAnalysis/ADMAnalysis EinsteinBase/ADMBase EinsteinBase/ADMCoupling EinsteinBase/ADMMacros AEIThorns/ADMMass AEIThorns/AEILocalInterp EinsteinAnalysis/AHFinder EinsteinAnalysis/AHFinderDirect ExternalLibraries/BLAS CactusBase/Boundary EinsteinAnalysis/CalcK Carpet/Carpet Carpet/CarpetEvolutionMask Carpet/CarpetIOASCII Carpet/CarpetIOBasic Carpet/CarpetIOHDF5 Carpet/CarpetIOScalar Carpet/CarpetIntegrateTest Carpet/CarpetInterp Carpet/CarpetInterp2 Carpet/CarpetLib Carpet/CarpetMask Carpet/CarpetProlongateTest Carpet/CarpetReduce Carpet/CarpetRegrid Carpet/CarpetRegrid2 Carpet/CarpetRegridTest Carpet/CarpetSlab Carpet/CarpetTracker CactusBase/CartGrid3D CactusNumerical/Cartoon2D EinsteinBase/Constants CactusBase/CoordBase EinsteinBase/CoordGauge Carpet/CycleClock CactusExamples/DemoInterp CactusNumerical/Dissipation EinsteinInitialData/DistortedBHIVP EinsteinAnalysis/EHFinder EinsteinBase/EOS_Base EinsteinEOS/EOS_Hybrid EinsteinEOS/EOS_IdealFluid EinsteinEOS/EOS_Omni EinsteinEOS/EOS_Polytrope EinsteinExact/EinsteinExact_Test CactusElliptic/EllBase CactusElliptic/EllSOR EinsteinInitialData/Exact EinsteinAnalysis/Extract ExternalLibraries/FFTW3 CactusExamples/FleshInfo CactusUtils/Formaline CactusBase/Fortran EinsteinEvolve/GRHydro EinsteinEvolve/GRHydro_InitData ExternalLibraries/GSL EinsteinExact/GaugeWave KrancNumericalTools/GenericFD ExternalLibraries/HDF5 CactusConnect/HTTPD CactusConnect/HTTPDExtra CactusExamples/HelloWorld Carpet/HighOrderWaveTest EinsteinBase/HydroBase EinsteinAnalysis/Hydro_Analysis EinsteinInitialData/Hydro_InitExcision EinsteinInitialData/IDAnalyticBH EinsteinInitialData/IDAxiBrillBH EinsteinInitialData/IDAxiOddBrillBH EinsteinInitialData/IDBrillData EinsteinInitialData/IDConstraintViolate EinsteinInitialData/IDFileADM EinsteinInitialData/IDLinearWaves CactusWave/IDScalarWave CactusWave/IDScalarWaveC CactusWave/IDScalarWaveCXX CactusWave/IDScalarWaveElliptic CactusExamples/IDWaveMoL CactusBase/IOASCII CactusBase/IOBasic CactusPUGHIO/IOHDF5 CactusPUGHIO/IOHDF5Util CactusIO/IOJpeg CactusBase/IOUtil CactusBase/InitBase CactusNumerical/InterpToArray EinsteinExact/KerrSchild ExternalLibraries/LAPACK ExternalLibraries/LORENE CactusNumerical/LocalInterp CactusNumerical/LocalInterp2 CactusNumerical/LocalReduce Carpet/LoopControl McLachlan/ML_ADMConstraints McLachlan/ML_ADMQuantities McLachlan/ML_BSSN McLachlan/ML_BSSN_Helper McLachlan/ML_BSSN_Test McLachlan/ML_CCZ4 McLachlan/ML_CCZ4_Helper McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy McLachlan/ML_WaveToy_Test ExternalLibraries/MPI CactusUtils/MemSpeed EinsteinInitialData/Meudon_Bin_BH EinsteinInitialData/Meudon_Bin_NS EinsteinInitialData/Meudon_Mag_NS EinsteinExact/Minkowski CactusNumerical/MoL EinsteinExact/ModifiedSchwarzschildBL EinsteinAnalysis/Multipole CactusUtils/NaNCatcher CactusUtils/NaNChecker EinsteinEvolve/NewRad CactusUtils/Nice EinsteinInitialData/NoExcision CactusUtils/NoMPI CactusNumerical/Noise CactusNumerical/Norms PITTNullCode/NullConstr PITTNullCode/NullDecomp PITTNullCode/NullEvolve PITTNullCode/NullExact PITTNullCode/NullGrid PITTNullCode/NullInterp PITTNullCode/NullNews PITTNullCode/NullPsiInt PITTNullCode/NullSHRExtract PITTNullCode/NullVars ExternalLibraries/OpenSSL EinsteinAnalysis/Outflow ExternalLibraries/PAPI CactusPUGH/PUGH CactusPUGH/PUGHInterp CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic LSUThorns/PeriodicCarpet CactusExamples/Poisson AEIThorns/PunctureTracker LSUThorns/QuasiLocalMeasures Carpet/ReductionTest Carpet/ReductionTest2 Carpet/ReductionTest3 CactusNumerical/ReflectionSymmetry Carpet/RegridSyncTest EinsteinInitialData/RotatingDBHIVP CactusNumerical/RotatingSymmetry180 CactusNumerical/RotatingSymmetry90 CactusExamples/SampleBoundary CactusExamples/SampleIO EinsteinUtils/SetMask_SphericalSurface EinsteinExact/ShiftedGaugeWave CactusNumerical/Slab CactusNumerical/SlabTest CactusConnect/Socket CactusNumerical/SpaceMask PITTNullCode/SphericalHarmonicDecomp PITTNullCode/SphericalHarmonicRecon CactusNumerical/SphericalSurface EinsteinBase/StaticConformal LSUThorns/SummationByParts CactusBase/SymBase AEIThorns/SystemStatistics CactusUtils/SystemTopology CactusElliptic/TATelliptic EinsteinUtils/TGRtensor EinsteinInitialData/TOVSolver CactusUtils/TerminationTrigger CactusTest/TestArrays Carpet/TestCarpetGridInfo CactusTest/TestComplex CactusTest/TestCoordinates CactusTest/TestFortranCrayPointers CactusTest/TestFortranDependencies1 CactusTest/TestFortranDependencies2 CactusTest/TestFpointerNULL CactusTest/TestFreeF90 CactusTest/TestGlobalReduce CactusTest/TestInclude1 CactusTest/TestInclude2 CactusNumerical/TestLocalInterp2 CactusNumerical/TestLocalReduce CactusTest/TestLoop Carpet/TestLoopControl CactusTest/TestMath CactusTest/TestMoL CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule CactusTest/TestStrings CactusTest/TestTable CactusTest/TestTimers CactusTest/TestTypes CactusBase/Time CactusExamples/TimerInfo CactusUtils/TimerReport Carpet/Timers EinsteinBase/TmunuBase AEIThorns/Trigger EinsteinInitialData/TwoPunctures EinsteinExact/Vaidya2 LSUThorns/Vectors CactusWave/WaveBinarySource CactusExamples/WaveMoL CactusExamples/WaveToy1DF77 CactusExamples/WaveToy2DF77 CactusWave/WaveToyC CactusWave/WaveToyCXX CactusWave/WaveToyExtra CactusWave/WaveToyF77 CactusWave/WaveToyF90 CactusWave/WaveToyFreeF90 EinsteinAnalysis/WeylScal4 ExternalLibraries/hwloc ExternalLibraries/libjpeg ExternalLibraries/zlib
  236. Undefined symbols for architecture x86_64:
  237. "MPI::Win::Free()", referenced from:
  238. vtable for MPI::Win in libthorn_PeriodicCarpet.a(periodic.cc.o)
  239. vtable for MPI::Win in libthorn_Carpet.a(helpers.cc.o)
  240. vtable for MPI::Win in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
  241. vtable for MPI::Win in libthorn_CarpetIOASCII.a(ioascii.cc.o)
  242. vtable for MPI::Win in libthorn_CarpetIOBasic.a(iobasic.cc.o)
  243. vtable for MPI::Win in libthorn_CarpetIOHDF5.a(Input.cc.o)
  244. vtable for MPI::Win in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
  245. ...
  246. "MPI::Comm::Comm()", referenced from:
  247. MPI::Intercomm::Merge(bool) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  248. MPI::Intracomm::Split(int, int) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  249. MPI::Intracomm::Create(MPI::Group const&) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  250. MPI::Graphcomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  251. MPI::Cartcomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  252. MPI::Intracomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  253. MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
  254. ...
  255. "MPI::Datatype::Free()", referenced from:
  256. vtable for MPI::Datatype in libthorn_PeriodicCarpet.a(periodic.cc.o)
  257. vtable for MPI::Datatype in libthorn_Carpet.a(helpers.cc.o)
  258. vtable for MPI::Datatype in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
  259. vtable for MPI::Datatype in libthorn_CarpetIOASCII.a(ioascii.cc.o)
  260. vtable for MPI::Datatype in libthorn_CarpetIOBasic.a(iobasic.cc.o)
  261. vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(Input.cc.o)
  262. vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
  263. ...
  264. "_ompi_mpi_cxx_op_intercept", referenced from:
  265. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_PeriodicCarpet.a(periodic.cc.o)
  266. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_Carpet.a(helpers.cc.o)
  267. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
  268. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOASCII.a(ioascii.cc.o)
  269. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOBasic.a(iobasic.cc.o)
  270. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)
  271. MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
  272. ...
  273. ld: symbol(s) not found for architecture x86_64
  274. collect2: error: ld returned 1 exit status
  275. make[1]: *** [/Users/comerduncan/Cactus/exe/cactus_sim] Error 1
  276. make: *** [sim] Error 2
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