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misnomer001

steppe_en khvalynsk+chg+tyumen+meshoko fail

misnomer001
Aug 8th, 2023
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  1. qpAdm: parameter file: parqpAdm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: ste4
  5. indivname: ste4.ind
  6. snpname: ste4.snp
  7. genotypename: ste4.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. ## qpAdm version: 1520
  14. seed: 1926354222
  15. inbreed set NO
  16. inbreed set NO
  17. tmp: /tmp/fsx.9274
  18.  
  19. left pops:
  20. Russia_Steppe_Eneolithic
  21. Russia_Khvalynsk_Eneolithic
  22. CHG
  23. Russia_Caucasus_Eneolithic
  24. Tyumen_HG
  25.  
  26. right pops:
  27. Mbuti.DG
  28. Morocco_Iberomaurusian
  29. Italy_North_Villabruna_HG
  30. GEO_Dzudzuana_UP
  31. Russia_MA1_HG.SG
  32. ONG.SG
  33. Iran_GanjDareh_N
  34. Turkey_Epipaleolithic
  35.  
  36. codimension 1
  37. f4info:
  38. f4rank: 3 dof: 4 chisq: 18.712 tail: 0.000895179249 dofdiff: 6 chisqdiff: -18.712 taildiff: 1
  39. B:
  40. scale 1.000 1.000 1.000
  41. Morocco_Iberomaurusian 0.083 0.499 -1.158
  42. Italy_North_Villabruna_HG 0.887 2.045 0.229
  43. GEO_Dzudzuana_UP -0.196 0.982 -0.064
  44. Russia_MA1_HG.SG 2.352 -0.551 -0.302
  45. ONG.SG 0.626 -0.290 0.379
  46. Iran_GanjDareh_N -0.402 0.151 2.180
  47. Turkey_Epipaleolithic -0.292 1.092 -0.785
  48. A:
  49. scale 105.344 281.517 650.088
  50. Russia_Khvalynsk_Eneolithic 0.593 0.717 -0.989
  51. CHG -1.027 -1.113 -0.072
  52. Russia_Caucasus_Eneolithic -1.090 -0.143 -1.548
  53. Tyumen_HG 1.185 -1.492 -0.786
  54.  
  55.  
  56. full rank
  57. f4info:
  58. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 4 chisqdiff: 18.712 taildiff: 0.000895179249
  59. B:
  60. scale 158.629 90.767 98.192 78.945
  61. Morocco_Iberomaurusian 0.542 -0.261 0.236 -0.018
  62. Italy_North_Villabruna_HG 1.688 -1.476 -0.991 -0.061
  63. GEO_Dzudzuana_UP 0.432 -0.145 0.151 -0.553
  64. Russia_MA1_HG.SG 1.583 -2.098 -2.283 2.333
  65. ONG.SG 0.458 -0.392 -0.676 0.640
  66. Iran_GanjDareh_N -0.974 0.178 -0.052 -0.621
  67. Turkey_Epipaleolithic -0.078 -0.384 0.518 -0.672
  68. A:
  69. scale 2.000 2.000 2.000 2.000
  70. Russia_Khvalynsk_Eneolithic 2.000 0.000 0.000 0.000
  71. CHG 0.000 2.000 0.000 0.000
  72. Russia_Caucasus_Eneolithic 0.000 0.000 2.000 0.000
  73. Tyumen_HG 0.000 0.000 0.000 2.000
  74.  
  75.  
  76. best coefficients: 0.834 0.816 -0.489 -0.161
  77. totmean: 0.834 0.816 -0.489 -0.161
  78. boot mean: 1.602 2.348 -2.261 -0.689
  79. std. errors: 43.127 76.543 89.506 30.106
  80.  
  81. error covariance (* 1,000,000)
  82. 1859906552 3286767801 -3848584122 -1298090230
  83. 3286767801 5858784425 -6849984070 -2295568156
  84. -3848584122 -6849984070 8011304077 2687264115
  85. -1298090230 -2295568156 2687264115 906394271
  86.  
  87.  
  88. summ: Russia_Steppe_Eneolithic 4 0.000895 1.602 2.348 -2.261 -0.689 1859906552 3286767801 -3848584122 -1298090230 5858784425 ...
  89. -6849984070 -2295568156 8011304077 2687264115 906394271
  90.  
  91. fixed pat wt dof chisq tail prob
  92. 0000 0 4 18.712 0.000895179 0.834 0.816 -0.489 -0.161 infeasible
  93. 0001 1 5 20.000 0.00124984 0.601 0.589 -0.189 0.000 infeasible
  94. 0010 1 5 22.336 0.000451999 0.519 0.432 0.000 0.048
  95. 0100 1 5 34.825 1.63069e-06 0.198 0.000 0.520 0.282
  96. 1000 1 5 34.798 1.65107e-06 0.000 -0.300 0.877 0.422 infeasible
  97. 0011 2 6 23.131 0.000753768 0.577 0.423 0.000 0.000
  98. 0101 2 6 53.535 9.15252e-10 0.579 0.000 0.421 0.000
  99. 0110 2 6 100.192 2.2877e-19 1.827 0.000 0.000 -0.827 infeasible
  100. 1001 2 6 58.719 8.18996e-11 0.000 -80.140 81.140 0.000 infeasible
  101. 1010 2 6 69.715 4.67693e-13 0.000 0.607 0.000 0.393
  102. 1100 2 6 38.280 9.90483e-07 0.000 0.000 0.590 0.410
  103. 0111 3 7 171.196 0 1.000 0.000 0.000 0.000
  104. 1011 3 7 273.963 0 0.000 1.000 0.000 0.000
  105. 1101 3 7 250.411 0 0.000 0.000 1.000 0.000
  106. 1110 3 7 426.656 0 0.000 0.000 0.000 1.000
  107. best pat: 0000 0.000895179 - -
  108. best pat: 0010 0.000451999 chi(nested): 3.623 p-value for nested model: 0.056969
  109. best pat: 0011 0.000753768 chi(nested): 0.795 p-value for nested model: 0.372474
  110. best pat: 0111 1.40433e-33 chi(nested): 148.065 p-value for nested model: 4.59013e-34
  111.  
  112. coeffs: 0.834 0.816 -0.489 -0.161
  113.  
  114. ## dscore:: f_4(Base, Fit, Rbase, right2)
  115. ## genstat:: f_4(Base, Fit, right1, right2)
  116.  
  117. details: Russia_Khvalynsk_Eneolithic Morocco_Iberomaurusian 0.003416 3.112685
  118. details: CHG Morocco_Iberomaurusian -0.002871 -2.583377
  119. details: Russia_Caucasus_Eneolithic Morocco_Iberomaurusian 0.002405 1.779056
  120. details: Tyumen_HG Morocco_Iberomaurusian -0.000225 -0.173948
  121. dscore: Morocco_Iberomaurusian f4: -0.000633 Z: -0.458098
  122.  
  123. details: Russia_Khvalynsk_Eneolithic Italy_North_Villabruna_HG 0.010640 6.407577
  124. details: CHG Italy_North_Villabruna_HG -0.016263 -9.423184
  125. details: Russia_Caucasus_Eneolithic Italy_North_Villabruna_HG -0.010089 -5.216999
  126. details: Tyumen_HG Italy_North_Villabruna_HG -0.000774 -0.407520
  127. dscore: Italy_North_Villabruna_HG f4: 0.000668 Z: 0.339330
  128.  
  129. details: Russia_Khvalynsk_Eneolithic GEO_Dzudzuana_UP 0.002723 1.354197
  130. details: CHG GEO_Dzudzuana_UP -0.001601 -0.794592
  131. details: Russia_Caucasus_Eneolithic GEO_Dzudzuana_UP 0.001540 0.643862
  132. details: Tyumen_HG GEO_Dzudzuana_UP -0.006999 -3.094341
  133. dscore: GEO_Dzudzuana_UP f4: 0.001339 Z: 0.564164
  134.  
  135. details: Russia_Khvalynsk_Eneolithic Russia_MA1_HG.SG 0.009982 5.625275
  136. details: CHG Russia_MA1_HG.SG -0.023109 -13.162153
  137. details: Russia_Caucasus_Eneolithic Russia_MA1_HG.SG -0.023251 -11.917495
  138. details: Tyumen_HG Russia_MA1_HG.SG 0.029554 13.900355
  139. dscore: Russia_MA1_HG.SG f4: -0.003910 Z: -1.925289
  140.  
  141. details: Russia_Khvalynsk_Eneolithic ONG.SG 0.002887 2.409953
  142. details: CHG ONG.SG -0.004315 -3.646681
  143. details: Russia_Caucasus_Eneolithic ONG.SG -0.006880 -4.912666
  144. details: Tyumen_HG ONG.SG 0.008103 5.749473
  145. dscore: ONG.SG f4: 0.000950 Z: 0.667722
  146.  
  147. details: Russia_Khvalynsk_Eneolithic Iran_GanjDareh_N -0.006137 -6.020478
  148. details: CHG Iran_GanjDareh_N 0.001963 1.743423
  149. details: Russia_Caucasus_Eneolithic Iran_GanjDareh_N -0.000528 -0.404381
  150. details: Tyumen_HG Iran_GanjDareh_N -0.007871 -6.031098
  151. dscore: Iran_GanjDareh_N f4: -0.001993 Z: -1.529212
  152.  
  153. details: Russia_Khvalynsk_Eneolithic Turkey_Epipaleolithic -0.000494 -0.321458
  154. details: CHG Turkey_Epipaleolithic -0.004228 -2.671192
  155. details: Russia_Caucasus_Eneolithic Turkey_Epipaleolithic 0.005276 2.760865
  156. details: Tyumen_HG Turkey_Epipaleolithic -0.008513 -4.849684
  157. dscore: Turkey_Epipaleolithic f4: -0.005072 Z: -2.665262
  158.  
  159. gendstat: Mbuti.DG Morocco_Iberomaurusian -0.458
  160. gendstat: Mbuti.DG Italy_North_Villabruna_HG 0.339
  161. gendstat: Mbuti.DG GEO_Dzudzuana_UP 0.564
  162. gendstat: Mbuti.DG Russia_MA1_HG.SG -1.925
  163. gendstat: Mbuti.DG ONG.SG 0.668
  164. gendstat: Mbuti.DG Iran_GanjDareh_N -1.529
  165. gendstat: Mbuti.DG Turkey_Epipaleolithic -2.665
  166. gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG 0.634
  167. gendstat: Morocco_Iberomaurusian GEO_Dzudzuana_UP 0.806
  168. gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG -1.498
  169. gendstat: Morocco_Iberomaurusian ONG.SG 0.957
  170. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -0.874
  171. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -2.281
  172. gendstat: Italy_North_Villabruna_HG GEO_Dzudzuana_UP 0.250
  173. gendstat: Italy_North_Villabruna_HG Russia_MA1_HG.SG -1.920
  174. gendstat: Italy_North_Villabruna_HG ONG.SG 0.140
  175. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -1.355
  176. gendstat: Italy_North_Villabruna_HG Turkey_Epipaleolithic -2.568
  177. gendstat: GEO_Dzudzuana_UP Russia_MA1_HG.SG -1.837
  178. gendstat: GEO_Dzudzuana_UP ONG.SG -0.161
  179. gendstat: GEO_Dzudzuana_UP Iran_GanjDareh_N -1.423
  180. gendstat: GEO_Dzudzuana_UP Turkey_Epipaleolithic -2.451
  181. gendstat: Russia_MA1_HG.SG ONG.SG 2.388
  182. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 0.949
  183. gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic -0.466
  184. gendstat: ONG.SG Iran_GanjDareh_N -2.077
  185. gendstat: ONG.SG Turkey_Epipaleolithic -3.189
  186. gendstat: Iran_GanjDareh_N Turkey_Epipaleolithic -1.690
  187.  
  188. removing /tmp/fsx.9274
  189. ##end of qpAdm: 8.904 seconds cpu 0.426 Mbytes in use
  190.  
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