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Legend_9813

Khatri_o

Legend_9813
Apr 25th, 2023
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  1. qpAdm: parameter file: parqpadm
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. indivname: Indian.ind
  5. snpname: Indian.snp
  6. genotypename: Indian.geno
  7. popleft: left
  8. popright: right
  9. details: YES
  10. allsnps: YES
  11. inbreed: YES
  12. ## qpAdm version: 1520
  13. seed: 454689942
  14. inbreed set YES
  15. inbreed set YES
  16. tmp: /tmp/fsx.13870
  17.  
  18. left pops:
  19. Khatri_o
  20. Paniya
  21. Indus_lowAASI
  22. Russia_Srubnaya_Alakul
  23.  
  24. right pops:
  25. Mbuti.DG
  26. EHG
  27. CHG
  28. WSHG
  29. Onge.DG
  30. Turkey_N
  31. Iraq_PPNA
  32. Levant_PPN
  33. CHN_Tarim_EMBA1
  34. Iran_GanjDareh_N
  35. Mongolia_North_N
  36. Serbia_IronGates_Mesolithic
  37.  
  38. codimension 1
  39. f4info:
  40. f4rank: 2 dof: 9 chisq: 10.071 tail: 0.344738392 dofdiff: 11 chisqdiff: -10.071 taildiff: 1
  41. B:
  42. scale 1.000 1.000
  43. EHG 1.245 0.970
  44. CHG 1.003 -0.642
  45. WSHG 0.888 0.177
  46. Onge.DG -0.818 0.684
  47. Turkey_N 1.228 0.440
  48. Iraq_PPNA 0.959 -0.745
  49. Levant_PPN 1.113 0.014
  50. CHN_Tarim_EMBA1 0.735 0.321
  51. Iran_GanjDareh_N 0.722 -2.236
  52. Mongolia_North_N -0.497 0.508
  53. Serbia_IronGates_Mesolithic 1.418 1.744
  54. A:
  55. scale 83.934 266.473
  56. Paniya -1.286 0.760
  57. Indus_lowAASI 0.252 -1.183
  58. Russia_Srubnaya_Alakul 1.132 1.012
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 10.071 taildiff: 0.344738392
  64. B:
  65. scale 64.662 199.320 68.616
  66. EHG -1.004 0.087 1.500
  67. CHG -1.128 1.105 0.760
  68. WSHG -0.836 0.401 0.927
  69. Onge.DG 0.946 -1.081 -0.547
  70. Turkey_N -1.171 0.185 1.226
  71. Iraq_PPNA -1.172 0.911 0.608
  72. Levant_PPN -1.084 0.756 1.072
  73. CHN_Tarim_EMBA1 -0.690 0.071 0.784
  74. Iran_GanjDareh_N -1.110 2.470 0.122
  75. Mongolia_North_N 0.606 -0.711 -0.287
  76. Serbia_IronGates_Mesolithic -1.062 -0.629 1.812
  77. A:
  78. scale 1.732 1.732 1.732
  79. Paniya 1.732 0.000 0.000
  80. Indus_lowAASI 0.000 1.732 0.000
  81. Russia_Srubnaya_Alakul 0.000 0.000 1.732
  82.  
  83.  
  84. best coefficients: 0.313 0.425 0.261
  85. totmean: 0.313 0.425 0.261
  86. boot mean: 0.313 0.426 0.261
  87. std. errors: 0.021 0.031 0.022
  88.  
  89. error covariance (* 1,000,000)
  90. 446 -472 26
  91. -472 969 -497
  92. 26 -497 471
  93.  
  94.  
  95. summ: Khatri_o 3 0.344738 0.313 0.426 0.261 446 -472 26 969 -497 ...
  96. 471
  97.  
  98. fixed pat wt dof chisq tail prob
  99. 000 0 9 10.071 0.344738 0.313 0.425 0.261
  100. 001 1 10 122.630 1.47919e-21 0.254 0.746 0.000
  101. 010 1 10 223.044 0 0.518 0.000 0.482
  102. 100 1 10 163.382 6.48823e-30 0.000 0.824 0.176
  103. 011 2 11 1069.099 0 1.000 0.000 0.000
  104. 101 2 11 195.941 0 0.000 1.000 0.000
  105. 110 2 11 1156.068 0 0.000 0.000 1.000
  106. best pat: 000 0.344738 - -
  107. best pat: 001 1.47919e-21 chi(nested): 112.559 p-value for nested model: 2.69538e-26
  108. best pat: 101 5.1663e-36 chi(nested): 73.311 p-value for nested model: 1.10751e-17
  109.  
  110. coeffs: 0.313 0.425 0.261
  111.  
  112. ## dscore:: f_4(Base, Fit, Rbase, right2)
  113. ## genstat:: f_4(Base, Fit, right1, right2)
  114.  
  115. details: Paniya EHG -0.015526 -15.177927
  116. details: Indus_lowAASI EHG 0.000438 0.319923
  117. details: Russia_Srubnaya_Alakul EHG 0.021859 18.865237
  118. dscore: EHG f4: 0.001036 Z: 1.037090
  119.  
  120. details: Paniya CHG -0.017451 -14.215776
  121. details: Indus_lowAASI CHG 0.005543 3.365157
  122. details: Russia_Srubnaya_Alakul CHG 0.011071 8.440193
  123. dscore: CHG f4: -0.000218 Z: -0.182181
  124.  
  125. details: Paniya WSHG -0.012926 -10.237109
  126. details: Indus_lowAASI WSHG 0.002013 1.205653
  127. details: Russia_Srubnaya_Alakul WSHG 0.013504 9.706691
  128. dscore: WSHG f4: 0.000336 Z: 0.280460
  129.  
  130. details: Paniya Onge.DG 0.014632 12.671484
  131. details: Indus_lowAASI Onge.DG -0.005425 -3.605982
  132. details: Russia_Srubnaya_Alakul Onge.DG -0.007971 -6.619909
  133. dscore: Onge.DG f4: 0.000195 Z: 0.181183
  134.  
  135. details: Paniya Turkey_N -0.018106 -19.659557
  136. details: Indus_lowAASI Turkey_N 0.000927 0.757419
  137. details: Russia_Srubnaya_Alakul Turkey_N 0.017861 18.147066
  138. dscore: Turkey_N f4: -0.000610 Z: -0.696481
  139.  
  140. details: Paniya Iraq_PPNA -0.018132 -13.684204
  141. details: Indus_lowAASI Iraq_PPNA 0.004573 2.624286
  142. details: Russia_Srubnaya_Alakul Iraq_PPNA 0.008862 5.962987
  143. dscore: Iraq_PPNA f4: -0.001421 Z: -1.117633
  144.  
  145. details: Paniya Levant_PPN -0.016770 -14.478477
  146. details: Indus_lowAASI Levant_PPN 0.003792 2.452888
  147. details: Russia_Srubnaya_Alakul Levant_PPN 0.015624 12.499736
  148. dscore: Levant_PPN f4: 0.000442 Z: 0.396702
  149.  
  150. details: Paniya CHN_Tarim_EMBA1 -0.010678 -9.157016
  151. details: Indus_lowAASI CHN_Tarim_EMBA1 0.000358 0.223753
  152. details: Russia_Srubnaya_Alakul CHN_Tarim_EMBA1 0.011431 8.578534
  153. dscore: CHN_Tarim_EMBA1 f4: -0.000205 Z: -0.178265
  154.  
  155. details: Paniya Iran_GanjDareh_N -0.017165 -17.351684
  156. details: Indus_lowAASI Iran_GanjDareh_N 0.012390 9.225038
  157. details: Russia_Srubnaya_Alakul Iran_GanjDareh_N 0.001780 1.642513
  158. dscore: Iran_GanjDareh_N f4: 0.000353 Z: 0.364930
  159.  
  160. details: Paniya Mongolia_North_N 0.009367 8.467343
  161. details: Indus_lowAASI Mongolia_North_N -0.003566 -2.539614
  162. details: Russia_Srubnaya_Alakul Mongolia_North_N -0.004186 -3.734935
  163. dscore: Mongolia_North_N f4: 0.000325 Z: 0.323670
  164.  
  165. details: Paniya Serbia_IronGates_Mesolithic -0.016427 -16.051538
  166. details: Indus_lowAASI Serbia_IronGates_Mesolithic -0.003157 -2.337269
  167. details: Russia_Srubnaya_Alakul Serbia_IronGates_Mesolithic 0.026402 23.475555
  168. dscore: Serbia_IronGates_Mesolithic f4: 0.000413 Z: 0.419673
  169.  
  170. gendstat: Mbuti.DG EHG 1.037
  171. gendstat: Mbuti.DG CHG -0.182
  172. gendstat: Mbuti.DG WSHG 0.280
  173. gendstat: Mbuti.DG Onge.DG 0.181
  174. gendstat: Mbuti.DG Turkey_N -0.696
  175. gendstat: Mbuti.DG Iraq_PPNA -1.118
  176. gendstat: Mbuti.DG Levant_PPN 0.397
  177. gendstat: Mbuti.DG CHN_Tarim_EMBA1 -0.178
  178. gendstat: Mbuti.DG Iran_GanjDareh_N 0.365
  179. gendstat: Mbuti.DG Mongolia_North_N 0.324
  180. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.420
  181. gendstat: EHG CHG -1.154
  182. gendstat: EHG WSHG -0.771
  183. gendstat: EHG Onge.DG -0.731
  184. gendstat: EHG Turkey_N -2.109
  185. gendstat: EHG Iraq_PPNA -1.956
  186. gendstat: EHG Levant_PPN -0.554
  187. gendstat: EHG CHN_Tarim_EMBA1 -1.514
  188. gendstat: EHG Iran_GanjDareh_N -0.720
  189. gendstat: EHG Mongolia_North_N -0.720
  190. gendstat: EHG Serbia_IronGates_Mesolithic -0.913
  191. gendstat: CHG WSHG 0.416
  192. gendstat: CHG Onge.DG 0.307
  193. gendstat: CHG Turkey_N -0.404
  194. gendstat: CHG Iraq_PPNA -0.884
  195. gendstat: CHG Levant_PPN 0.525
  196. gendstat: CHG CHN_Tarim_EMBA1 0.010
  197. gendstat: CHG Iran_GanjDareh_N 0.551
  198. gendstat: CHG Mongolia_North_N 0.427
  199. gendstat: CHG Serbia_IronGates_Mesolithic 0.567
  200. gendstat: WSHG Onge.DG -0.107
  201. gendstat: WSHG Turkey_N -0.869
  202. gendstat: WSHG Iraq_PPNA -1.191
  203. gendstat: WSHG Levant_PPN 0.080
  204. gendstat: WSHG CHN_Tarim_EMBA1 -0.551
  205. gendstat: WSHG Iran_GanjDareh_N 0.014
  206. gendstat: WSHG Mongolia_North_N -0.009
  207. gendstat: WSHG Serbia_IronGates_Mesolithic 0.072
  208. gendstat: Onge.DG Turkey_N -0.715
  209. gendstat: Onge.DG Iraq_PPNA -1.072
  210. gendstat: Onge.DG Levant_PPN 0.182
  211. gendstat: Onge.DG CHN_Tarim_EMBA1 -0.316
  212. gendstat: Onge.DG Iran_GanjDareh_N 0.131
  213. gendstat: Onge.DG Mongolia_North_N 0.132
  214. gendstat: Onge.DG Serbia_IronGates_Mesolithic 0.188
  215. gendstat: Turkey_N Iraq_PPNA -0.718
  216. gendstat: Turkey_N Levant_PPN 1.216
  217. gendstat: Turkey_N CHN_Tarim_EMBA1 0.381
  218. gendstat: Turkey_N Iran_GanjDareh_N 1.215
  219. gendstat: Turkey_N Mongolia_North_N 0.938
  220. gendstat: Turkey_N Serbia_IronGates_Mesolithic 1.502
  221. gendstat: Iraq_PPNA Levant_PPN 1.415
  222. gendstat: Iraq_PPNA CHN_Tarim_EMBA1 0.840
  223. gendstat: Iraq_PPNA Iran_GanjDareh_N 1.460
  224. gendstat: Iraq_PPNA Mongolia_North_N 1.212
  225. gendstat: Iraq_PPNA Serbia_IronGates_Mesolithic 1.485
  226. gendstat: Levant_PPN CHN_Tarim_EMBA1 -0.513
  227. gendstat: Levant_PPN Iran_GanjDareh_N -0.077
  228. gendstat: Levant_PPN Mongolia_North_N -0.095
  229. gendstat: Levant_PPN Serbia_IronGates_Mesolithic -0.029
  230. gendstat: CHN_Tarim_EMBA1 Iran_GanjDareh_N 0.486
  231. gendstat: CHN_Tarim_EMBA1 Mongolia_North_N 0.476
  232. gendstat: CHN_Tarim_EMBA1 Serbia_IronGates_Mesolithic 0.598
  233. gendstat: Iran_GanjDareh_N Mongolia_North_N -0.026
  234. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic 0.063
  235. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic 0.086
  236.  
  237. removing /tmp/fsx.13870
  238. ##end of qpAdm: 5.581 seconds cpu 1.016 Mbytes in use
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