[2020-01-21T16:57:46.277] [INFO] hftrace - jobMessage:  [ 'FqjQ-0kY:39:28:1_msg',
  '{"executable":"gatk-wrapper","args":["-T","GenotypeGVCFs","-R","Gmax_275_v2.0.fa","-o","20180321-083514-GVCF_Chr01.vcf","-L","Chr01","--variant","20180321-083514-USB-001_Chr01.vcf"],"inputs":[{"name":"Gmax_275_v2.0.fa.sa","_id":2,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.fa","_id":4,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.fa.amb","_id":5,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.fa.bwt","_id":6,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.fa.ann","_id":7,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.fa.pac","_id":8,"data":[{}],"sigIdx":1},{"name":"chromosome.txt","_id":10,"data":[{}],"sigIdx":1},{"name":"software.tar.gz","_id":11,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.dict","_id":12,"data":[{}],"sigIdx":1},{"name":"Gmax_275_v2.0.fa.fai","_id":13,"data":[{}],"sigIdx":1},{"name":"20180321-083514-USB-001_Chr01.vcf.idx","_id":24,"source":7,"firingId":1,"sigIdx":1},{"name":"20180321-083514-USB-001_Chr01.vcf","_id":25,"source":7,"firingId":1,"sigIdx":1}],"outputs":[{"name":"20180321-083514-GVCF_Chr01.vcf"},{"name":"20180321-083514-GVCF_Chr01.vcf.idx"}],"redis_url":"redis://redis.orzech1.svc.dev.onedata.uk.to:6379","taskId":"FqjQ-0kY:39:28:1","name":"genotype_gvcfs"}' ]
[2020-01-21T16:57:46.289] [INFO] hftrace - command: {"pid":22,"name":"genotype_gvcfs","command":["/bin/bash","/soykb/gatk-wrapper","-T","GenotypeGVCFs","-R","Gmax_275_v2.0.fa","-o","20180321-083514-GVCF_Chr01.vcf","-L","Chr01","--variant","20180321-083514-USB-001_Chr01.vcf"]}