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misnomer001

kumsay vonyuchka allnsps no pass

misnomer001
Feb 9th, 2020
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  1. ## qpAdm version: 1000
  2. seed: 1795636442
  3. read 1073741824 bytes
  4. read 1339052118 bytes
  5. packed geno read OK
  6. end of inpack
  7.  
  8. left pops:
  9. Kumsay_EBA
  10. Steppe_Eneolithic_VJ1001
  11. WSHG
  12.  
  13. right pops:
  14. Russia_MA1_HG
  15. EEHG
  16. WEHG
  17. Anatolia_N
  18. Russia_Shamanka_EN.SG
  19. Georgia_Satsurblia.SG
  20. Ganj_Dareh_N
  21. Onge.DG
  22. Russia_AfontovaGora3
  23. PPN
  24. Brazil_LapaDoSanto_9600BP
  25. China_Tianyuan
  26.  
  27. 0 Kumsay_EBA 4
  28. 1 Steppe_Eneolithic_VJ1001 1
  29. 2 WSHG 3
  30. 3 Russia_MA1_HG 1
  31. 4 EEHG 5
  32. 5 WEHG 36
  33. 6 Anatolia_N 23
  34. 7 Russia_Shamanka_EN.SG 10
  35. 8 Georgia_Satsurblia.SG 1
  36. 9 Ganj_Dareh_N 8
  37. 10 Onge.DG 2
  38. 11 Russia_AfontovaGora3 1
  39. 12 PPN 8
  40. 13 Brazil_LapaDoSanto_9600BP 5
  41. 14 China_Tianyuan 1
  42. jackknife block size: 0.050
  43. snps: 1150458 indivs: 109
  44. number of blocks for block jackknife: 552
  45. ## ncols: 1150458
  46. coverage: Kumsay_EBA 960872
  47. coverage: Steppe_Eneolithic_VJ1001 825542
  48. coverage: WSHG 858019
  49. coverage: Russia_MA1_HG 805960
  50. coverage: EEHG 1052093
  51. coverage: WEHG 1141246
  52. coverage: Anatolia_N 1136560
  53. coverage: Russia_Shamanka_EN.SG 1149998
  54. coverage: Georgia_Satsurblia.SG 801311
  55. coverage: Ganj_Dareh_N 1057358
  56. coverage: Onge.DG 1120748
  57. coverage: Russia_AfontovaGora3 265583
  58. coverage: PPN 835499
  59. coverage: Brazil_LapaDoSanto_9600BP 946991
  60. coverage: China_Tianyuan 885079
  61. dof (jackknife): 450.892
  62. numsnps used: 385632
  63. codimension 1
  64. f4info:
  65. f4rank: 1 dof: 10 chisq: 10.058 tail: 0.435412955 dofdiff: 12 chisqdiff: -10.058 taildiff: 1
  66. B:
  67. scale 1.000
  68. EEHG 0.073
  69. WEHG 0.900
  70. Anatolia_N 1.457
  71. Russia_Shamanka_EN.SG 0.132
  72. Georgia_Satsurblia.SG 1.865
  73. Ganj_Dareh_N 1.423
  74. Onge.DG 0.509
  75. Russia_AfontovaGora3 -0.584
  76. PPN 1.336
  77. Brazil_LapaDoSanto_9600BP -0.025
  78. China_Tianyuan 0.397
  79. A:
  80. scale 1189.612
  81. Steppe_Eneolithic_VJ1001 1.164
  82. WSHG -0.803
  83.  
  84.  
  85. full rank
  86. f4info:
  87. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 10.058 taildiff: 0.435412955
  88. B:
  89. scale 1011.224 1491.723
  90. EEHG 0.168 0.091
  91. WEHG 1.067 -0.677
  92. Anatolia_N 1.495 -1.378
  93. Russia_Shamanka_EN.SG 0.142 -0.119
  94. Georgia_Satsurblia.SG 1.602 -2.152
  95. Ganj_Dareh_N 1.502 -1.293
  96. Onge.DG 0.534 -0.464
  97. Russia_AfontovaGora3 -0.526 0.659
  98. PPN 1.420 -1.223
  99. Brazil_LapaDoSanto_9600BP -0.083 -0.042
  100. China_Tianyuan 0.411 -0.410
  101. A:
  102. scale 1.414 1.414
  103. Steppe_Eneolithic_VJ1001 1.414 0.000
  104. WSHG 0.000 1.414
  105.  
  106.  
  107. best coefficients: 0.408 0.592
  108. Jackknife mean: 0.408078629 0.591921371
  109. std. errors: 0.028 0.028
  110.  
  111. error covariance (* 1,000,000)
  112. 774 -774
  113. -774 774
  114.  
  115.  
  116. summ: Kumsay_EBA 2 0.435413 0.408 0.592 774 -774 774
  117.  
  118. fixed pat wt dof chisq tail prob
  119. 00 0 10 10.058 0.435413 0.408 0.592
  120. 01 1 11 231.222 0 1.000 0.000
  121. 10 1 11 180.637 0 0.000 1.000
  122. best pat: 00 0.435413 - -
  123. best pat: 10 7.57405e-33 chi(nested): 170.579 p-value for nested model: 5.53106e-39
  124.  
  125. coeffs: 0.408 0.592
  126.  
  127. ## dscore:: f_4(Base, Fit, Rbase, right2)
  128. ## genstat:: f_4(Base, Fit, right1, right2)
  129.  
  130. details: Steppe_Eneolithic_VJ1001 EEHG 0.000166 0.819687
  131. details: WSHG EEHG 0.000061 0.377613
  132. dscore: EEHG f4: 0.000104 Z: 0.732294
  133.  
  134. details: Steppe_Eneolithic_VJ1001 WEHG 0.001056 5.269860
  135. details: WSHG WEHG -0.000454 -2.974600
  136. dscore: WEHG f4: 0.000162 Z: 1.170874
  137.  
  138. details: Steppe_Eneolithic_VJ1001 Anatolia_N 0.001478 7.371799
  139. details: WSHG Anatolia_N -0.000924 -6.041517
  140. dscore: Anatolia_N f4: 0.000057 Z: 0.413533
  141.  
  142. details: Steppe_Eneolithic_VJ1001 Russia_Shamanka_EN.SG 0.000140 0.666888
  143. details: WSHG Russia_Shamanka_EN.SG -0.000080 -0.503636
  144. dscore: Russia_Shamanka_EN.SG f4: 0.000010 Z: 0.067252
  145.  
  146. details: Steppe_Eneolithic_VJ1001 Georgia_Satsurblia.SG 0.001585 6.366364
  147. details: WSHG Georgia_Satsurblia.SG -0.001443 -7.109403
  148. dscore: Georgia_Satsurblia.SG f4: -0.000207 Z: -1.177355
  149.  
  150. details: Steppe_Eneolithic_VJ1001 Ganj_Dareh_N 0.001486 6.829836
  151. details: WSHG Ganj_Dareh_N -0.000867 -5.191466
  152. dscore: Ganj_Dareh_N f4: 0.000094 Z: 0.627703
  153.  
  154. details: Steppe_Eneolithic_VJ1001 Onge.DG 0.000528 2.390183
  155. details: WSHG Onge.DG -0.000311 -1.862153
  156. dscore: Onge.DG f4: 0.000032 Z: 0.209417
  157.  
  158. details: Steppe_Eneolithic_VJ1001 Russia_AfontovaGora3 -0.000520 -2.297426
  159. details: WSHG Russia_AfontovaGora3 0.000442 2.434928
  160. dscore: Russia_AfontovaGora3 f4: 0.000049 Z: 0.310320
  161.  
  162. details: Steppe_Eneolithic_VJ1001 PPN 0.001404 6.075297
  163. details: WSHG PPN -0.000820 -4.524114
  164. dscore: PPN f4: 0.000088 Z: 0.537738
  165.  
  166. details: Steppe_Eneolithic_VJ1001 Brazil_LapaDoSanto_9600BP -0.000082 -0.365353
  167. details: WSHG Brazil_LapaDoSanto_9600BP -0.000028 -0.169878
  168. dscore: Brazil_LapaDoSanto_9600BP f4: -0.000050 Z: -0.330300
  169.  
  170. details: Steppe_Eneolithic_VJ1001 China_Tianyuan 0.000406 1.617207
  171. details: WSHG China_Tianyuan -0.000275 -1.458015
  172. dscore: China_Tianyuan f4: 0.000003 Z: 0.019079
  173.  
  174. gendstat: Russia_MA1_HG EEHG 0.732
  175. gendstat: Russia_MA1_HG WEHG 1.171
  176. gendstat: Russia_MA1_HG Anatolia_N 0.414
  177. gendstat: Russia_MA1_HG Russia_Shamanka_EN.SG 0.067
  178. gendstat: Russia_MA1_HG Georgia_Satsurblia.SG -1.177
  179. gendstat: Russia_MA1_HG Ganj_Dareh_N 0.628
  180. gendstat: Russia_MA1_HG Onge.DG 0.209
  181. gendstat: Russia_MA1_HG Russia_AfontovaGora3 0.310
  182. gendstat: Russia_MA1_HG PPN 0.538
  183. gendstat: Russia_MA1_HG Brazil_LapaDoSanto_9600BP -0.330
  184. gendstat: Russia_MA1_HG China_Tianyuan 0.019
  185. gendstat: EEHG WEHG 0.603
  186. gendstat: EEHG Anatolia_N -0.482
  187. gendstat: EEHG Russia_Shamanka_EN.SG -0.799
  188. gendstat: EEHG Georgia_Satsurblia.SG -2.047
  189. gendstat: EEHG Ganj_Dareh_N -0.094
  190. gendstat: EEHG Onge.DG -0.593
  191. gendstat: EEHG Russia_AfontovaGora3 -0.393
  192. gendstat: EEHG PPN -0.125
  193. gendstat: EEHG Brazil_LapaDoSanto_9600BP -1.259
  194. gendstat: EEHG China_Tianyuan -0.701
  195. gendstat: WEHG Anatolia_N -1.482
  196. gendstat: WEHG Russia_Shamanka_EN.SG -1.621
  197. gendstat: WEHG Georgia_Satsurblia.SG -2.593
  198. gendstat: WEHG Ganj_Dareh_N -0.729
  199. gendstat: WEHG Onge.DG -1.226
  200. gendstat: WEHG Russia_AfontovaGora3 -0.806
  201. gendstat: WEHG PPN -0.686
  202. gendstat: WEHG Brazil_LapaDoSanto_9600BP -1.813
  203. gendstat: WEHG China_Tianyuan -1.229
  204. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.483
  205. gendstat: Anatolia_N Georgia_Satsurblia.SG -2.069
  206. gendstat: Anatolia_N Ganj_Dareh_N 0.448
  207. gendstat: Anatolia_N Onge.DG -0.254
  208. gendstat: Anatolia_N Russia_AfontovaGora3 -0.054
  209. gendstat: Anatolia_N PPN 0.360
  210. gendstat: Anatolia_N Brazil_LapaDoSanto_9600BP -0.939
  211. gendstat: Anatolia_N China_Tianyuan -0.397
  212. gendstat: Russia_Shamanka_EN.SG Georgia_Satsurblia.SG -1.437
  213. gendstat: Russia_Shamanka_EN.SG Ganj_Dareh_N 0.811
  214. gendstat: Russia_Shamanka_EN.SG Onge.DG 0.205
  215. gendstat: Russia_Shamanka_EN.SG Russia_AfontovaGora3 0.257
  216. gendstat: Russia_Shamanka_EN.SG PPN 0.625
  217. gendstat: Russia_Shamanka_EN.SG Brazil_LapaDoSanto_9600BP -0.585
  218. gendstat: Russia_Shamanka_EN.SG China_Tianyuan -0.052
  219. gendstat: Georgia_Satsurblia.SG Ganj_Dareh_N 2.222
  220. gendstat: Georgia_Satsurblia.SG Onge.DG 1.632
  221. gendstat: Georgia_Satsurblia.SG Russia_AfontovaGora3 1.434
  222. gendstat: Georgia_Satsurblia.SG PPN 1.999
  223. gendstat: Georgia_Satsurblia.SG Brazil_LapaDoSanto_9600BP 0.963
  224. gendstat: Georgia_Satsurblia.SG China_Tianyuan 1.221
  225. gendstat: Ganj_Dareh_N Onge.DG -0.581
  226. gendstat: Ganj_Dareh_N Russia_AfontovaGora3 -0.304
  227. gendstat: Ganj_Dareh_N PPN -0.052
  228. gendstat: Ganj_Dareh_N Brazil_LapaDoSanto_9600BP -1.252
  229. gendstat: Ganj_Dareh_N China_Tianyuan -0.644
  230. gendstat: Onge.DG Russia_AfontovaGora3 0.116
  231. gendstat: Onge.DG PPN 0.460
  232. gendstat: Onge.DG Brazil_LapaDoSanto_9600BP -0.714
  233. gendstat: Onge.DG China_Tianyuan -0.197
  234. gendstat: Russia_AfontovaGora3 PPN 0.244
  235. gendstat: Russia_AfontovaGora3 Brazil_LapaDoSanto_9600BP -0.673
  236. gendstat: Russia_AfontovaGora3 China_Tianyuan -0.279
  237. gendstat: PPN Brazil_LapaDoSanto_9600BP -1.023
  238. gendstat: PPN China_Tianyuan -0.539
  239. gendstat: Brazil_LapaDoSanto_9600BP China_Tianyuan 0.384
  240.  
  241. ##end of qpAdm: 231.940 seconds cpu 1293.509 Mbytes in use
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