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misnomer001

SPGT InPe molaly gonur almost pass

misnomer001
Jan 10th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1860856369
  4.  
  5. left pops:
  6. SPGT
  7. InPe
  8. Gonur1_BA
  9. Molaly_LBA
  10.  
  11. right pops:
  12. Kazakhstan_Botai.SG
  13. Ganj_Dareh_N
  14. PPN
  15. Anatolia_N
  16. Iberia_MN
  17. Russia_MA1.SG
  18. Georgia_Satsurblia.SG
  19. Kostenki14.SG
  20. Russia_Karelia_HG
  21. Serbia_Iron_Gates_HG
  22. Tyumen_HG
  23. Onge.DG
  24. Russia_Shamanka_EN.SG
  25. Nepal_Chokhopani_2700BP.SG
  26.  
  27. 0 SPGT 85
  28. 1 InPe 10
  29. 2 Gonur1_BA 18
  30. 3 Molaly_LBA 1
  31. 4 Kazakhstan_Botai.SG 3
  32. 5 Ganj_Dareh_N 7
  33. 6 PPN 8
  34. 7 Anatolia_N 22
  35. 8 Iberia_MN 4
  36. 9 Russia_MA1.SG 1
  37. 10 Georgia_Satsurblia.SG 1
  38. 11 Kostenki14.SG 1
  39. 12 Russia_Karelia_HG 2
  40. 13 Serbia_Iron_Gates_HG 32
  41. 14 Tyumen_HG 2
  42. 15 Onge.DG 2
  43. 16 Russia_Shamanka_EN.SG 10
  44. 17 Nepal_Chokhopani_2700BP.SG 1
  45. jackknife block size: 0.050
  46. snps: 1150478 indivs: 210
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150478
  49. coverage: SPGT 1134632
  50. coverage: InPe 878190
  51. coverage: Gonur1_BA 949932
  52. coverage: Molaly_LBA 732706
  53. coverage: Kazakhstan_Botai.SG 1149870
  54. coverage: Ganj_Dareh_N 1029695
  55. coverage: PPN 835499
  56. coverage: Anatolia_N 1134099
  57. coverage: Iberia_MN 967760
  58. coverage: Russia_MA1.SG 805960
  59. coverage: Georgia_Satsurblia.SG 801311
  60. coverage: Kostenki14.SG 1048972
  61. coverage: Russia_Karelia_HG 1010733
  62. coverage: Serbia_Iron_Gates_HG 1139259
  63. coverage: Tyumen_HG 807474
  64. coverage: Onge.DG 1120748
  65. coverage: Russia_Shamanka_EN.SG 1149998
  66. coverage: Nepal_Chokhopani_2700BP.SG 1147419
  67. dof (jackknife): 467.252
  68. numsnps used: 1150478
  69. codimension 1
  70. f4info:
  71. f4rank: 2 dof: 11 chisq: 20.572 tail: 0.0380812155 dofdiff: 13 chisqdiff: -20.572 taildiff: 1
  72. B:
  73. scale 1.000 1.000
  74. Ganj_Dareh_N 2.441 0.320
  75. PPN 1.244 -0.539
  76. Anatolia_N 1.220 -0.864
  77. Iberia_MN 0.816 -0.664
  78. Russia_MA1.SG 0.459 0.610
  79. Georgia_Satsurblia.SG 1.585 -0.493
  80. Kostenki14.SG 0.596 0.409
  81. Russia_Karelia_HG 0.131 -0.077
  82. Serbia_Iron_Gates_HG 0.155 -0.816
  83. Tyumen_HG 0.121 0.388
  84. Onge.DG 0.202 2.426
  85. Russia_Shamanka_EN.SG -0.315 1.328
  86. Nepal_Chokhopani_2700BP.SG -0.258 1.472
  87. A:
  88. scale 914.328 1555.326
  89. InPe 0.456 1.025
  90. Gonur1_BA 1.267 -0.945
  91. Molaly_LBA -1.090 -1.028
  92.  
  93.  
  94. full rank
  95. f4info:
  96. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 20.572 taildiff: 0.0380812155
  97. B:
  98. scale 1.000 1.000 1.000
  99. Ganj_Dareh_N 2.465 0.214 -0.276
  100. PPN 1.252 -0.552 0.514
  101. Anatolia_N 1.194 -0.914 0.762
  102. Iberia_MN 0.801 -0.680 0.077
  103. Russia_MA1.SG 0.462 0.600 0.428
  104. Georgia_Satsurblia.SG 1.560 -0.546 -0.549
  105. Kostenki14.SG 0.621 0.405 0.025
  106. Russia_Karelia_HG 0.114 -0.096 0.900
  107. Serbia_Iron_Gates_HG 0.132 -0.786 -1.147
  108. Tyumen_HG 0.120 0.395 0.685
  109. Onge.DG 0.240 2.411 1.630
  110. Russia_Shamanka_EN.SG -0.309 1.338 -2.513
  111. Nepal_Chokhopani_2700BP.SG -0.245 1.463 0.147
  112. A:
  113. scale 928.863 1613.097 8479.568
  114. InPe 0.538 1.074 -0.676
  115. Gonur1_BA 1.254 -1.014 -0.187
  116. Molaly_LBA -1.067 -0.904 -1.584
  117.  
  118.  
  119. best coefficients: 0.495 0.138 0.367
  120. Jackknife mean: 0.495337892 0.138220483 0.366441625
  121. std. errors: 0.032 0.027 0.024
  122.  
  123. error covariance (* 1000000)
  124. 1053 -598 -455
  125. -598 709 -111
  126. -455 -111 566
  127.  
  128.  
  129. summ: SPGT 3 0.038081 0.495 0.138 0.366 1053 -598 -455 709 -111 566
  130.  
  131. fixed pat wt dof chisq tail prob
  132. 000 0 11 20.572 0.0380812 0.495 0.138 0.367
  133. 001 1 12 235.086 0 0.951 0.049 -0.000
  134. 010 1 12 43.130 2.14602e-05 0.600 0.000 0.400
  135. 100 1 12 146.451 2.97103e-25 0.000 0.300 0.700
  136. 011 2 13 237.214 0 1.000 0.000 -0.000
  137. 101 2 13 1379.076 0 0.000 1.000 -0.000
  138. 110 2 13 187.047 0 0.000 0.000 1.000
  139. best pat: 000 0.0380812 - -
  140. best pat: 010 2.14602e-05 chi(nested): 22.558 p-value for nested model: 2.03904e-06
  141. best pat: 110 6.16735e-33 chi(nested): 143.917 p-value for nested model: 3.70495e-33
  142.  
  143. coeffs: 0.495 0.138 0.367
  144.  
  145. ## dscore:: f_4(Base, Fit, Rbase, right2)
  146. ## genstat:: f_4(Base, Fit, right1, right2)
  147.  
  148. details: InPe Ganj_Dareh_N 0.001603 8.939834
  149. details: Gonur1_BA Ganj_Dareh_N 0.003204 20.668022
  150. details: Molaly_LBA Ganj_Dareh_N -0.002977 -9.441866
  151. dscore: Ganj_Dareh_N f4: 0.000142 Z: 0.984996
  152.  
  153. details: InPe PPN 0.000330 1.676843
  154. details: Gonur1_BA PPN 0.002034 12.200218
  155. details: Molaly_LBA PPN -0.001321 -3.850598
  156. dscore: PPN f4: -0.000042 Z: -0.260884
  157.  
  158. details: InPe Anatolia_N 0.000043 0.284122
  159. details: Gonur1_BA Anatolia_N 0.002173 16.450673
  160. details: Molaly_LBA Anatolia_N -0.001068 -3.500925
  161. dscore: Anatolia_N f4: -0.000071 Z: -0.532544
  162.  
  163. details: InPe Iberia_MN 0.000013 0.081236
  164. details: Gonur1_BA Iberia_MN 0.001514 9.738641
  165. details: Molaly_LBA Iberia_MN -0.000631 -1.924988
  166. dscore: Iberia_MN f4: -0.000016 Z: -0.113425
  167.  
  168. details: InPe Russia_MA1.SG 0.000629 3.193295
  169. details: Gonur1_BA Russia_MA1.SG 0.000235 1.454526
  170. details: Molaly_LBA Russia_MA1.SG -0.001025 -3.258342
  171. dscore: Russia_MA1.SG f4: -0.000033 Z: -0.204630
  172.  
  173. details: InPe Georgia_Satsurblia.SG 0.000622 2.805552
  174. details: Gonur1_BA Georgia_Satsurblia.SG 0.002474 13.988805
  175. details: Molaly_LBA Georgia_Satsurblia.SG -0.001401 -4.029722
  176. dscore: Georgia_Satsurblia.SG f4: 0.000135 Z: 0.764216
  177.  
  178. details: InPe Kostenki14.SG 0.000649 3.105995
  179. details: Gonur1_BA Kostenki14.SG 0.000595 3.390926
  180. details: Molaly_LBA Kostenki14.SG -0.001017 -2.873255
  181. dscore: Kostenki14.SG f4: 0.000030 Z: 0.175478
  182.  
  183. details: InPe Russia_Karelia_HG -0.000076 -0.423971
  184. details: Gonur1_BA Russia_Karelia_HG 0.000198 1.225168
  185. details: Molaly_LBA Russia_Karelia_HG -0.000316 -1.034632
  186. dscore: Russia_Karelia_HG f4: -0.000126 Z: -0.866822
  187.  
  188. details: InPe Serbia_Iron_Gates_HG -0.000351 -2.441818
  189. details: Gonur1_BA Serbia_Iron_Gates_HG 0.000698 5.584451
  190. details: Molaly_LBA Serbia_Iron_Gates_HG 0.000408 1.463516
  191. dscore: Serbia_Iron_Gates_HG f4: 0.000072 Z: 0.575071
  192.  
  193. details: InPe Tyumen_HG 0.000271 1.467092
  194. details: Gonur1_BA Tyumen_HG -0.000114 -0.705903
  195. details: Molaly_LBA Tyumen_HG -0.000586 -1.763013
  196. dscore: Tyumen_HG f4: -0.000097 Z: -0.634859
  197.  
  198. details: InPe Onge.DG 0.001632 9.087929
  199. details: Gonur1_BA Onge.DG -0.001233 -7.952904
  200. details: Molaly_LBA Onge.DG -0.002012 -6.038976
  201. dscore: Onge.DG f4: -0.000101 Z: -0.665829
  202.  
  203. details: InPe Russia_Shamanka_EN.SG 0.000932 6.163586
  204. details: Gonur1_BA Russia_Shamanka_EN.SG -0.001205 -9.542141
  205. details: Molaly_LBA Russia_Shamanka_EN.SG 0.000046 0.144661
  206. dscore: Russia_Shamanka_EN.SG f4: 0.000312 Z: 2.246611
  207.  
  208. details: InPe Nepal_Chokhopani_2700BP.SG 0.000857 4.626028
  209. details: Gonur1_BA Nepal_Chokhopani_2700BP.SG -0.001252 -7.366688
  210. details: Molaly_LBA Nepal_Chokhopani_2700BP.SG -0.000579 -1.558369
  211. dscore: Nepal_Chokhopani_2700BP.SG f4: 0.000039 Z: 0.238309
  212.  
  213. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 0.985
  214. gendstat: Kazakhstan_Botai.SG PPN -0.261
  215. gendstat: Kazakhstan_Botai.SG Anatolia_N -0.533
  216. gendstat: Kazakhstan_Botai.SG Iberia_MN -0.113
  217. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -0.205
  218. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.764
  219. gendstat: Kazakhstan_Botai.SG Kostenki14.SG 0.175
  220. gendstat: Kazakhstan_Botai.SG Russia_Karelia_HG -0.867
  221. gendstat: Kazakhstan_Botai.SG Serbia_Iron_Gates_HG 0.575
  222. gendstat: Kazakhstan_Botai.SG Tyumen_HG -0.635
  223. gendstat: Kazakhstan_Botai.SG Onge.DG -0.666
  224. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 2.247
  225. gendstat: Kazakhstan_Botai.SG Nepal_Chokhopani_2700BP.SG 0.238
  226. gendstat: Ganj_Dareh_N PPN -1.195
  227. gendstat: Ganj_Dareh_N Anatolia_N -1.731
  228. gendstat: Ganj_Dareh_N Iberia_MN -1.123
  229. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.923
  230. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -0.041
  231. gendstat: Ganj_Dareh_N Kostenki14.SG -0.611
  232. gendstat: Ganj_Dareh_N Russia_Karelia_HG -1.549
  233. gendstat: Ganj_Dareh_N Serbia_Iron_Gates_HG -0.494
  234. gendstat: Ganj_Dareh_N Tyumen_HG -1.325
  235. gendstat: Ganj_Dareh_N Onge.DG -1.493
  236. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 1.052
  237. gendstat: Ganj_Dareh_N Nepal_Chokhopani_2700BP.SG -0.559
  238. gendstat: PPN Anatolia_N -0.267
  239. gendstat: PPN Iberia_MN 0.191
  240. gendstat: PPN Russia_MA1.SG 0.044
  241. gendstat: PPN Georgia_Satsurblia.SG 0.915
  242. gendstat: PPN Kostenki14.SG 0.384
  243. gendstat: PPN Russia_Karelia_HG -0.468
  244. gendstat: PPN Serbia_Iron_Gates_HG 0.837
  245. gendstat: PPN Tyumen_HG -0.281
  246. gendstat: PPN Onge.DG -0.337
  247. gendstat: PPN Russia_Shamanka_EN.SG 2.097
  248. gendstat: PPN Nepal_Chokhopani_2700BP.SG 0.423
  249. gendstat: Anatolia_N Iberia_MN 0.588
  250. gendstat: Anatolia_N Russia_MA1.SG 0.216
  251. gendstat: Anatolia_N Georgia_Satsurblia.SG 1.276
  252. gendstat: Anatolia_N Kostenki14.SG 0.632
  253. gendstat: Anatolia_N Russia_Karelia_HG -0.353
  254. gendstat: Anatolia_N Serbia_Iron_Gates_HG 1.423
  255. gendstat: Anatolia_N Tyumen_HG -0.144
  256. gendstat: Anatolia_N Onge.DG -0.197
  257. gendstat: Anatolia_N Russia_Shamanka_EN.SG 2.617
  258. gendstat: Anatolia_N Nepal_Chokhopani_2700BP.SG 0.652
  259. gendstat: Iberia_MN Russia_MA1.SG -0.086
  260. gendstat: Iberia_MN Georgia_Satsurblia.SG 0.830
  261. gendstat: Iberia_MN Kostenki14.SG 0.258
  262. gendstat: Iberia_MN Russia_Karelia_HG -0.652
  263. gendstat: Iberia_MN Serbia_Iron_Gates_HG 0.763
  264. gendstat: Iberia_MN Tyumen_HG -0.425
  265. gendstat: Iberia_MN Onge.DG -0.513
  266. gendstat: Iberia_MN Russia_Shamanka_EN.SG 2.058
  267. gendstat: Iberia_MN Nepal_Chokhopani_2700BP.SG 0.303
  268. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 0.762
  269. gendstat: Russia_MA1.SG Kostenki14.SG 0.313
  270. gendstat: Russia_MA1.SG Russia_Karelia_HG -0.474
  271. gendstat: Russia_MA1.SG Serbia_Iron_Gates_HG 0.619
  272. gendstat: Russia_MA1.SG Tyumen_HG -0.322
  273. gendstat: Russia_MA1.SG Onge.DG -0.351
  274. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 1.788
  275. gendstat: Russia_MA1.SG Nepal_Chokhopani_2700BP.SG 0.344
  276. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -0.508
  277. gendstat: Georgia_Satsurblia.SG Russia_Karelia_HG -1.305
  278. gendstat: Georgia_Satsurblia.SG Serbia_Iron_Gates_HG -0.352
  279. gendstat: Georgia_Satsurblia.SG Tyumen_HG -1.095
  280. gendstat: Georgia_Satsurblia.SG Onge.DG -1.193
  281. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 0.942
  282. gendstat: Georgia_Satsurblia.SG Nepal_Chokhopani_2700BP.SG -0.450
  283. gendstat: Kostenki14.SG Russia_Karelia_HG -0.846
  284. gendstat: Kostenki14.SG Serbia_Iron_Gates_HG 0.279
  285. gendstat: Kostenki14.SG Tyumen_HG -0.631
  286. gendstat: Kostenki14.SG Onge.DG -0.704
  287. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 1.578
  288. gendstat: Kostenki14.SG Nepal_Chokhopani_2700BP.SG 0.047
  289. gendstat: Russia_Karelia_HG Serbia_Iron_Gates_HG 1.414
  290. gendstat: Russia_Karelia_HG Tyumen_HG 0.155
  291. gendstat: Russia_Karelia_HG Onge.DG 0.142
  292. gendstat: Russia_Karelia_HG Russia_Shamanka_EN.SG 2.514
  293. gendstat: Russia_Karelia_HG Nepal_Chokhopani_2700BP.SG 0.821
  294. gendstat: Serbia_Iron_Gates_HG Tyumen_HG -0.987
  295. gendstat: Serbia_Iron_Gates_HG Onge.DG -1.104
  296. gendstat: Serbia_Iron_Gates_HG Russia_Shamanka_EN.SG 1.594
  297. gendstat: Serbia_Iron_Gates_HG Nepal_Chokhopani_2700BP.SG -0.185
  298. gendstat: Tyumen_HG Onge.DG -0.023
  299. gendstat: Tyumen_HG Russia_Shamanka_EN.SG 2.201
  300. gendstat: Tyumen_HG Nepal_Chokhopani_2700BP.SG 0.642
  301. gendstat: Onge.DG Russia_Shamanka_EN.SG 3.104
  302. gendstat: Onge.DG Nepal_Chokhopani_2700BP.SG 0.857
  303. gendstat: Russia_Shamanka_EN.SG Nepal_Chokhopani_2700BP.SG -2.070
  304.  
  305. ## end of run
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