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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- indivname: Ancient.ind
- snpname: Ancient.snp
- genotypename: Ancient.geno
- popleft: left
- popright: right
- inbreed: NO
- allsnps: YES
- details: YES
- ## qpAdm version: 1520
- seed: 35790857
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.1095
- left pops:
- RUS_YamnayaCluster
- RUS_Eneol_Piedmont
- UKR_N
- UKR_Trypillia_Eneol
- right pops:
- Mbuti.DG
- ARM_Aknashen_N
- ARM_Masis_Blur_N
- AZE_N
- CHG
- EHG
- IRN_Ganj_Dareh_N
- ISR_Natufian_EpiP
- Levant_PPN
- MAR_Taforalt_EpiP
- RUS_AfontovaGora3
- SRB_Iron_Gates_HG
- TUR_C_AşıklıHöyük_PPN
- TUR_C_Boncuklu_PPN
- TUR_C_Çatalhöyük_N
- TUR_Marmara_Barcın_N
- TUR_Pınarbaşı_EpiP
- WHG
- codimension 1
- f4info:
- f4rank: 2 dof: 15 chisq: 11.044 tail: 0.749498724 dofdiff: 17 chisqdiff: -11.044 taildiff: 1
- B:
- scale 1.000 1.000
- ARM_Aknashen_N 0.035 -0.343
- ARM_Masis_Blur_N 0.549 -0.297
- AZE_N 0.280 -0.380
- CHG -0.906 -0.340
- EHG -0.388 1.834
- IRN_Ganj_Dareh_N -0.627 -0.201
- ISR_Natufian_EpiP 1.085 -0.137
- Levant_PPN 1.076 -0.280
- MAR_Taforalt_EpiP 0.473 0.102
- RUS_AfontovaGora3 -1.292 1.297
- SRB_Iron_Gates_HG 1.529 2.468
- TUR_C_AşıklıHöyük_PPN 0.904 -0.362
- TUR_C_Boncuklu_PPN 1.180 -0.223
- TUR_C_Çatalhöyük_N 0.931 -0.405
- TUR_Marmara_Barcın_N 1.279 -0.389
- TUR_Pınarbaşı_EpiP 1.315 -0.051
- WHG 1.499 2.180
- A:
- scale 108.839 129.477
- RUS_Eneol_Piedmont -0.256 -0.018
- UKR_N 0.707 1.430
- UKR_Trypillia_Eneol 1.561 -0.977
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 15 chisqdiff: 11.044 taildiff: 0.749498724
- B:
- scale 410.789 72.295 65.349
- ARM_Aknashen_N 0.702 -0.239 0.278
- ARM_Masis_Blur_N 0.144 0.047 0.729
- AZE_N 0.105 -0.162 0.502
- CHG 1.207 -0.664 -0.630
- EHG 0.975 1.309 -1.212
- IRN_Ganj_Dareh_N 0.937 -0.439 -0.433
- ISR_Natufian_EpiP -0.593 0.435 1.130
- Levant_PPN -0.686 0.302 1.195
- MAR_Taforalt_EpiP -0.565 0.307 0.398
- RUS_AfontovaGora3 2.197 0.459 -1.801
- SRB_Iron_Gates_HG -1.254 2.700 0.247
- TUR_C_AşıklıHöyük_PPN -1.150 0.143 1.123
- TUR_C_Boncuklu_PPN -0.556 0.395 1.268
- TUR_C_Çatalhöyük_N -0.870 0.130 1.108
- TUR_Marmara_Barcın_N -0.778 0.312 1.435
- TUR_Pınarbaşı_EpiP -0.817 0.593 1.279
- WHG -1.410 2.460 0.355
- A:
- scale 1.732 1.732 1.732
- RUS_Eneol_Piedmont 1.732 0.000 0.000
- UKR_N 0.000 1.732 0.000
- UKR_Trypillia_Eneol 0.000 0.000 1.732
- best coefficients: 0.822 0.078 0.099
- totmean: 0.822 0.078 0.099
- boot mean: 0.822 0.078 0.099
- std. errors: 0.017 0.014 0.013
- error covariance (* 1,000,000)
- 286 -161 -125
- -161 204 -43
- -125 -43 167
- summ: RUS_YamnayaCluster 3 0.749499 0.822 0.078 0.099 286 -161 -125 204 -43 ...
- 167
- fixed pat wt dof chisq tail prob
- 000 0 15 11.044 0.749499 0.822 0.078 0.099
- 001 1 16 63.265 1.4615e-07 0.910 0.090 0.000
- 010 1 16 40.316 0.000700015 0.889 0.000 0.111
- 100 1 16 1433.447 0 0.000 -0.112 1.112 infeasible
- 011 2 17 91.206 3.68221e-12 1.000 0.000 0.000
- 101 2 17 5285.306 0 0.000 1.000 0.000
- 110 2 17 1443.372 0 0.000 0.000 1.000
- best pat: 000 0.749499 - -
- best pat: 010 0.000700015 chi(nested): 29.272 p-value for nested model: 6.28878e-08
- best pat: 011 3.68221e-12 chi(nested): 50.890 p-value for nested model: 9.77012e-13
- coeffs: 0.822 0.078 0.099
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: RUS_Eneol_Piedmont ARM_Aknashen_N 0.001709 1.201326
- details: UKR_N ARM_Aknashen_N -0.003306 -3.726431
- details: UKR_Trypillia_Eneol ARM_Aknashen_N 0.004256 1.738267
- dscore: ARM_Aknashen_N f4: 0.001568 Z: 1.301781
- details: RUS_Eneol_Piedmont ARM_Masis_Blur_N 0.000349 0.246416
- details: UKR_N ARM_Masis_Blur_N 0.000644 0.670461
- details: UKR_Trypillia_Eneol ARM_Masis_Blur_N 0.011157 4.375158
- dscore: ARM_Masis_Blur_N f4: 0.001446 Z: 1.209595
- details: RUS_Eneol_Piedmont AZE_N 0.000255 0.261553
- details: UKR_N AZE_N -0.002245 -3.309120
- details: UKR_Trypillia_Eneol AZE_N 0.007679 4.917811
- dscore: AZE_N f4: 0.000797 Z: 0.961834
- details: RUS_Eneol_Piedmont CHG 0.002938 2.817056
- details: UKR_N CHG -0.009184 -12.628380
- details: UKR_Trypillia_Eneol CHG -0.009636 -6.126438
- dscore: CHG f4: 0.000737 Z: 0.826281
- details: RUS_Eneol_Piedmont EHG 0.002374 2.177837
- details: UKR_N EHG 0.018105 26.373480
- details: UKR_Trypillia_Eneol EHG -0.018549 -12.213320
- dscore: EHG f4: 0.001529 Z: 1.653788
- details: RUS_Eneol_Piedmont IRN_Ganj_Dareh_N 0.002280 2.699296
- details: UKR_N IRN_Ganj_Dareh_N -0.006068 -10.276363
- details: UKR_Trypillia_Eneol IRN_Ganj_Dareh_N -0.006627 -5.333828
- dscore: IRN_Ganj_Dareh_N f4: 0.000740 Z: 1.032716
- details: RUS_Eneol_Piedmont ISR_Natufian_EpiP -0.001443 -1.080743
- details: UKR_N ISR_Natufian_EpiP 0.006019 6.826746
- details: UKR_Trypillia_Eneol ISR_Natufian_EpiP 0.017287 7.104548
- dscore: ISR_Natufian_EpiP f4: 0.001004 Z: 0.882269
- details: RUS_Eneol_Piedmont Levant_PPN -0.001671 -1.852074
- details: UKR_N Levant_PPN 0.004183 6.516678
- details: UKR_Trypillia_Eneol Levant_PPN 0.018279 12.324268
- dscore: Levant_PPN f4: 0.000771 Z: 1.003380
- details: RUS_Eneol_Piedmont MAR_Taforalt_EpiP -0.001375 -1.637280
- details: UKR_N MAR_Taforalt_EpiP 0.004243 7.267420
- details: UKR_Trypillia_Eneol MAR_Taforalt_EpiP 0.006096 4.572154
- dscore: MAR_Taforalt_EpiP f4: -0.000192 Z: -0.266306
- details: RUS_Eneol_Piedmont RUS_AfontovaGora3 0.005349 3.525895
- details: UKR_N RUS_AfontovaGora3 0.006352 6.326885
- details: UKR_Trypillia_Eneol RUS_AfontovaGora3 -0.027565 -11.487714
- dscore: RUS_AfontovaGora3 f4: 0.002157 Z: 1.668696
- details: RUS_Eneol_Piedmont SRB_Iron_Gates_HG -0.003052 -3.351074
- details: UKR_N SRB_Iron_Gates_HG 0.037347 57.318097
- details: UKR_Trypillia_Eneol SRB_Iron_Gates_HG 0.003777 2.727885
- dscore: SRB_Iron_Gates_HG f4: 0.000797 Z: 1.039647
- details: RUS_Eneol_Piedmont TUR_C_AşıklıHöyük_PPN -0.002799 -1.478822
- details: UKR_N TUR_C_AşıklıHöyük_PPN 0.001980 1.535115
- details: UKR_Trypillia_Eneol TUR_C_AşıklıHöyük_PPN 0.017179 4.070895
- dscore: TUR_C_AşıklıHöyük_PPN f4: -0.000438 Z: -0.272319
- details: RUS_Eneol_Piedmont TUR_C_Boncuklu_PPN -0.001353 -1.512774
- details: UKR_N TUR_C_Boncuklu_PPN 0.005458 8.793159
- details: UKR_Trypillia_Eneol TUR_C_Boncuklu_PPN 0.019406 13.687777
- dscore: TUR_C_Boncuklu_PPN f4: 0.001244 Z: 1.665384
- details: RUS_Eneol_Piedmont TUR_C_Çatalhöyük_N -0.002119 -1.988867
- details: UKR_N TUR_C_Çatalhöyük_N 0.001798 2.453925
- details: UKR_Trypillia_Eneol TUR_C_Çatalhöyük_N 0.016953 8.281612
- dscore: TUR_C_Çatalhöyük_N f4: 0.000084 Z: 0.091263
- details: RUS_Eneol_Piedmont TUR_Marmara_Barcın_N -0.001895 -2.524420
- details: UKR_N TUR_Marmara_Barcın_N 0.004317 7.757387
- details: UKR_Trypillia_Eneol TUR_Marmara_Barcın_N 0.021964 19.374676
- dscore: TUR_Marmara_Barcın_N f4: 0.000964 Z: 1.526357
- details: RUS_Eneol_Piedmont TUR_Pınarbaşı_EpiP -0.001989 -1.670528
- details: UKR_N TUR_Pınarbaşı_EpiP 0.008209 9.995880
- details: UKR_Trypillia_Eneol TUR_Pınarbaşı_EpiP 0.019574 10.574251
- dscore: TUR_Pınarbaşı_EpiP f4: 0.000954 Z: 0.961936
- details: RUS_Eneol_Piedmont WHG -0.003432 -3.490543
- details: UKR_N WHG 0.034021 47.389361
- details: UKR_Trypillia_Eneol WHG 0.005436 3.472441
- dscore: WHG f4: 0.000388 Z: 0.466676
- gendstat: Mbuti.DG ARM_Aknashen_N 1.302
- gendstat: Mbuti.DG ARM_Masis_Blur_N 1.210
- gendstat: Mbuti.DG AZE_N 0.962
- gendstat: Mbuti.DG CHG 0.826
- gendstat: Mbuti.DG EHG 1.654
- gendstat: Mbuti.DG IRN_Ganj_Dareh_N 1.033
- gendstat: Mbuti.DG ISR_Natufian_EpiP 0.882
- gendstat: Mbuti.DG Levant_PPN 1.003
- gendstat: Mbuti.DG MAR_Taforalt_EpiP -0.266
- gendstat: Mbuti.DG RUS_AfontovaGora3 1.669
- gendstat: Mbuti.DG SRB_Iron_Gates_HG 1.040
- gendstat: Mbuti.DG TUR_C_AşıklıHöyük_PPN -0.272
- gendstat: Mbuti.DG TUR_C_Boncuklu_PPN 1.665
- gendstat: Mbuti.DG TUR_C_Çatalhöyük_N 0.091
- gendstat: Mbuti.DG TUR_Marmara_Barcın_N 1.526
- gendstat: Mbuti.DG TUR_Pınarbaşı_EpiP 0.962
- gendstat: Mbuti.DG WHG 0.467
- gendstat: ARM_Aknashen_N ARM_Masis_Blur_N -0.081
- gendstat: ARM_Aknashen_N AZE_N -0.640
- gendstat: ARM_Aknashen_N CHG -0.677
- gendstat: ARM_Aknashen_N EHG -0.030
- gendstat: ARM_Aknashen_N IRN_Ganj_Dareh_N -0.725
- gendstat: ARM_Aknashen_N ISR_Natufian_EpiP -0.378
- gendstat: ARM_Aknashen_N Levant_PPN -0.680
- gendstat: ARM_Aknashen_N MAR_Taforalt_EpiP -1.418
- gendstat: ARM_Aknashen_N RUS_AfontovaGora3 0.355
- gendstat: ARM_Aknashen_N SRB_Iron_Gates_HG -0.645
- gendstat: ARM_Aknashen_N TUR_C_AşıklıHöyük_PPN -1.058
- gendstat: ARM_Aknashen_N TUR_C_Boncuklu_PPN -0.278
- gendstat: ARM_Aknashen_N TUR_C_Çatalhöyük_N -1.137
- gendstat: ARM_Aknashen_N TUR_Marmara_Barcın_N -0.561
- gendstat: ARM_Aknashen_N TUR_Pınarbaşı_EpiP -0.475
- gendstat: ARM_Aknashen_N WHG -0.930
- gendstat: ARM_Masis_Blur_N AZE_N -0.529
- gendstat: ARM_Masis_Blur_N CHG -0.566
- gendstat: ARM_Masis_Blur_N EHG 0.062
- gendstat: ARM_Masis_Blur_N IRN_Ganj_Dareh_N -0.584
- gendstat: ARM_Masis_Blur_N ISR_Natufian_EpiP -0.296
- gendstat: ARM_Masis_Blur_N Levant_PPN -0.580
- gendstat: ARM_Masis_Blur_N MAR_Taforalt_EpiP -1.305
- gendstat: ARM_Masis_Blur_N RUS_AfontovaGora3 0.441
- gendstat: ARM_Masis_Blur_N SRB_Iron_Gates_HG -0.556
- gendstat: ARM_Masis_Blur_N TUR_C_AşıklıHöyük_PPN -1.015
- gendstat: ARM_Masis_Blur_N TUR_C_Boncuklu_PPN -0.179
- gendstat: ARM_Masis_Blur_N TUR_C_Çatalhöyük_N -1.078
- gendstat: ARM_Masis_Blur_N TUR_Marmara_Barcın_N -0.446
- gendstat: ARM_Masis_Blur_N TUR_Pınarbaşı_EpiP -0.367
- gendstat: ARM_Masis_Blur_N WHG -0.882
- gendstat: AZE_N CHG -0.066
- gendstat: AZE_N EHG 0.728
- gendstat: AZE_N IRN_Ganj_Dareh_N -0.071
- gendstat: AZE_N ISR_Natufian_EpiP 0.172
- gendstat: AZE_N Levant_PPN -0.032
- gendstat: AZE_N MAR_Taforalt_EpiP -1.113
- gendstat: AZE_N RUS_AfontovaGora3 0.995
- gendstat: AZE_N SRB_Iron_Gates_HG 0.001
- gendstat: AZE_N TUR_C_AşıklıHöyük_PPN -0.734
- gendstat: AZE_N TUR_C_Boncuklu_PPN 0.558
- gendstat: AZE_N TUR_C_Çatalhöyük_N -0.752
- gendstat: AZE_N TUR_Marmara_Barcın_N 0.254
- gendstat: AZE_N TUR_Pınarbaşı_EpiP 0.145
- gendstat: AZE_N WHG -0.424
- gendstat: CHG EHG 0.758
- gendstat: CHG IRN_Ganj_Dareh_N 0.004
- gendstat: CHG ISR_Natufian_EpiP 0.210
- gendstat: CHG Levant_PPN 0.041
- gendstat: CHG MAR_Taforalt_EpiP -0.998
- gendstat: CHG RUS_AfontovaGora3 1.009
- gendstat: CHG SRB_Iron_Gates_HG 0.065
- gendstat: CHG TUR_C_AşıklıHöyük_PPN -0.688
- gendstat: CHG TUR_C_Boncuklu_PPN 0.583
- gendstat: CHG TUR_C_Çatalhöyük_N -0.620
- gendstat: CHG TUR_Marmara_Barcın_N 0.299
- gendstat: CHG TUR_Pınarbaşı_EpiP 0.191
- gendstat: CHG WHG -0.352
- gendstat: EHG IRN_Ganj_Dareh_N -0.833
- gendstat: EHG ISR_Natufian_EpiP -0.405
- gendstat: EHG Levant_PPN -0.797
- gendstat: EHG MAR_Taforalt_EpiP -1.803
- gendstat: EHG RUS_AfontovaGora3 0.509
- gendstat: EHG SRB_Iron_Gates_HG -1.012
- gendstat: EHG TUR_C_AşıklıHöyük_PPN -1.139
- gendstat: EHG TUR_C_Boncuklu_PPN -0.325
- gendstat: EHG TUR_C_Çatalhöyük_N -1.346
- gendstat: EHG TUR_Marmara_Barcın_N -0.689
- gendstat: EHG TUR_Pınarbaşı_EpiP -0.518
- gendstat: EHG WHG -1.326
- gendstat: IRN_Ganj_Dareh_N ISR_Natufian_EpiP 0.226
- gendstat: IRN_Ganj_Dareh_N Levant_PPN 0.040
- gendstat: IRN_Ganj_Dareh_N MAR_Taforalt_EpiP -1.117
- gendstat: IRN_Ganj_Dareh_N RUS_AfontovaGora3 1.078
- gendstat: IRN_Ganj_Dareh_N SRB_Iron_Gates_HG 0.069
- gendstat: IRN_Ganj_Dareh_N TUR_C_AşıklıHöyük_PPN -0.735
- gendstat: IRN_Ganj_Dareh_N TUR_C_Boncuklu_PPN 0.650
- gendstat: IRN_Ganj_Dareh_N TUR_C_Çatalhöyük_N -0.686
- gendstat: IRN_Ganj_Dareh_N TUR_Marmara_Barcın_N 0.348
- gendstat: IRN_Ganj_Dareh_N TUR_Pınarbaşı_EpiP 0.209
- gendstat: IRN_Ganj_Dareh_N WHG -0.390
- gendstat: ISR_Natufian_EpiP Levant_PPN -0.211
- gendstat: ISR_Natufian_EpiP MAR_Taforalt_EpiP -1.033
- gendstat: ISR_Natufian_EpiP RUS_AfontovaGora3 0.697
- gendstat: ISR_Natufian_EpiP SRB_Iron_Gates_HG -0.183
- gendstat: ISR_Natufian_EpiP TUR_C_AşıklıHöyük_PPN -0.780
- gendstat: ISR_Natufian_EpiP TUR_C_Boncuklu_PPN 0.213
- gendstat: ISR_Natufian_EpiP TUR_C_Çatalhöyük_N -0.761
- gendstat: ISR_Natufian_EpiP TUR_Marmara_Barcın_N -0.038
- gendstat: ISR_Natufian_EpiP TUR_Pınarbaşı_EpiP -0.037
- gendstat: ISR_Natufian_EpiP WHG -0.508
- gendstat: Levant_PPN MAR_Taforalt_EpiP -1.224
- gendstat: Levant_PPN RUS_AfontovaGora3 1.006
- gendstat: Levant_PPN SRB_Iron_Gates_HG 0.035
- gendstat: Levant_PPN TUR_C_AşıklıHöyük_PPN -0.761
- gendstat: Levant_PPN TUR_C_Boncuklu_PPN 0.677
- gendstat: Levant_PPN TUR_C_Çatalhöyük_N -0.804
- gendstat: Levant_PPN TUR_Marmara_Barcın_N 0.367
- gendstat: Levant_PPN TUR_Pınarbaşı_EpiP 0.194
- gendstat: Levant_PPN WHG -0.460
- gendstat: MAR_Taforalt_EpiP RUS_AfontovaGora3 1.737
- gendstat: MAR_Taforalt_EpiP SRB_Iron_Gates_HG 1.278
- gendstat: MAR_Taforalt_EpiP TUR_C_AşıklıHöyük_PPN -0.150
- gendstat: MAR_Taforalt_EpiP TUR_C_Boncuklu_PPN 1.804
- gendstat: MAR_Taforalt_EpiP TUR_C_Çatalhöyük_N 0.290
- gendstat: MAR_Taforalt_EpiP TUR_Marmara_Barcın_N 1.696
- gendstat: MAR_Taforalt_EpiP TUR_Pınarbaşı_EpiP 1.147
- gendstat: MAR_Taforalt_EpiP WHG 0.685
- gendstat: RUS_AfontovaGora3 SRB_Iron_Gates_HG -1.065
- gendstat: RUS_AfontovaGora3 TUR_C_AşıklıHöyük_PPN -1.312
- gendstat: RUS_AfontovaGora3 TUR_C_Boncuklu_PPN -0.690
- gendstat: RUS_AfontovaGora3 TUR_C_Çatalhöyük_N -1.427
- gendstat: RUS_AfontovaGora3 TUR_Marmara_Barcın_N -0.930
- gendstat: RUS_AfontovaGora3 TUR_Pınarbaşı_EpiP -0.806
- gendstat: RUS_AfontovaGora3 WHG -1.316
- gendstat: SRB_Iron_Gates_HG TUR_C_AşıklıHöyük_PPN -0.754
- gendstat: SRB_Iron_Gates_HG TUR_C_Boncuklu_PPN 0.639
- gendstat: SRB_Iron_Gates_HG TUR_C_Çatalhöyük_N -0.786
- gendstat: SRB_Iron_Gates_HG TUR_Marmara_Barcın_N 0.282
- gendstat: SRB_Iron_Gates_HG TUR_Pınarbaşı_EpiP 0.168
- gendstat: SRB_Iron_Gates_HG WHG -0.894
- gendstat: TUR_C_AşıklıHöyük_PPN TUR_C_Boncuklu_PPN 1.049
- gendstat: TUR_C_AşıklıHöyük_PPN TUR_C_Çatalhöyük_N 0.304
- gendstat: TUR_C_AşıklıHöyük_PPN TUR_Marmara_Barcın_N 0.897
- gendstat: TUR_C_AşıklıHöyük_PPN TUR_Pınarbaşı_EpiP 0.785
- gendstat: TUR_C_AşıklıHöyük_PPN WHG 0.487
- gendstat: TUR_C_Boncuklu_PPN TUR_C_Çatalhöyük_N -1.430
- gendstat: TUR_C_Boncuklu_PPN TUR_Marmara_Barcın_N -0.567
- gendstat: TUR_C_Boncuklu_PPN TUR_Pınarbaşı_EpiP -0.322
- gendstat: TUR_C_Boncuklu_PPN WHG -1.070
- gendstat: TUR_C_Çatalhöyük_N TUR_Marmara_Barcın_N 1.224
- gendstat: TUR_C_Çatalhöyük_N TUR_Pınarbaşı_EpiP 0.790
- gendstat: TUR_C_Çatalhöyük_N WHG 0.315
- gendstat: TUR_Marmara_Barcın_N TUR_Pınarbaşı_EpiP -0.012
- gendstat: TUR_Marmara_Barcın_N WHG -0.818
- gendstat: TUR_Pınarbaşı_EpiP WHG -0.558
- removing /tmp/fsx.1095
- ##end of qpAdm: 9.338 seconds cpu 1.430 Mbytes in use
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