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wcps error (catalina.out log)

Jan 14th, 2014
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  1. DEBUG [09:28:30] WcpsServlet@110: WCPS: invoked with POST
  2. INFO [09:28:30] Wcps@61: WCPS: Loading and parsing XML Schema ...
  3. INFO [09:28:30] Wcps@69: WCPS: Finished loading the schema.
  4. TRACE [09:28:30] DynamicMetadataSource@56: Creating dynamic metadata source from: DbMetadataSource
  5. DEBUG [09:28:30] DbMetadataSource@733: SQL query: SELECT name FROM ps9_coverage ORDER BY name
  6. DEBUG [09:28:30] WcpsServlet@167: WCPS: received the following query via a 'query' parameter in a POST request:
  7. DEBUG [09:28:30] WcpsServlet@169: for c in (mean_summer_airtemp) return encode( c, "tif")
  8. TRACE [09:28:30] RasUtil@245: Parsing abstract WCPS query...
  9. TRACE [09:28:30] RasUtil@254: Converting parsed request to XML...
  10. DEBUG [09:28:30] RasUtil@256: Done, xml query: <?xml version="1.0" encoding="UTF-8" ?>
  11. <ProcessCoveragesRequest xmlns="http://www.opengis.net/wcps/1.0" service="WCPS" version="1.0.0">
  12. <query><xmlSyntax><coverageIterator><iteratorVar>c</iteratorVar><coverageName>mean_summer_airtemp</coverageName></coverageIterator><encode store="false"><coverage>c</coverage><format>tif</format></encode></xmlSyntax></query></ProcessCoveragesRequest>
  13. DEBUG [09:28:30] WcpsServlet@179: -------------------------------------------------------
  14. DEBUG [09:28:30] WcpsServlet@180: Converting to rasql
  15. DEBUG [09:28:30] ProcessCoveragesRequest@99: Found XML Syntax query.
  16. DEBUG [09:28:30] XmlQuery@99: Processing XML Request: xmlSyntax
  17. INFO [09:28:30] XmlQuery@110: The current node is: coverageIterator
  18. TRACE [09:28:30] CoverageIterator@45: coverageIterator
  19. TRACE [09:28:30] CoverageIterator@61: Iterator variable: c
  20. TRACE [09:28:30] CoverageIterator@64: Coverage reference : mean_summer_airtemp
  21. INFO [09:28:30] XmlQuery@110: The current node is: encode
  22. TRACE [09:28:30] EncodeDataExpr@51: encode
  23. TRACE [09:28:30] CoverageExpr@57: coverage
  24. TRACE [09:28:30] DynamicMetadataSource@104: Reading metadata for dynamic coverage: mean_summer_airtemp
  25. TRACE [09:28:30] DynamicMetadataSource@110: coverages: [mean_summer_airtemp]
  26. DEBUG [09:28:30] DbMetadataSource@851: Reading metadata for coverage 'mean_summer_airtemp'
  27. DEBUG [09:28:30] DbMetadataSource@881: SQL query: SELECT id, name, gml_type_id, native_format_id FROM ps9_coverage WHERE name='mean_summer_airtemp'
  28. DEBUG [09:28:30] DbMetadataSource@901: SQL query: SELECT metadata_type_id, value FROM ps9_extra_metadata WHERE coverage_id=1
  29. DEBUG [09:28:30] DbMetadataSource@922: SQL query: SELECT native_crs_ids FROM ps9_domain_set WHERE coverage_id=1
  30. DEBUG [09:28:30] DbMetadataSource@934: CRS id: 8
  31. INFO [09:28:30] DbMetadataSource@941: Decoding http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326 ...
  32. DEBUG [09:28:30] CrsUtil@938: http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326 CRS is already decoded in cache.
  33. INFO [09:28:30] CrsUtil@291: http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326 definition is already in cache: do not need to fetch GML definition.
  34. TRACE [09:28:30] DbMetadataSource@948: Coverage mean_summer_airtemp CRS decoded: it has 2 axes.
  35. DEBUG [09:28:30] DbMetadataSource@973: SQL query: SELECT storage_table, storage_id FROM ps9_range_set WHERE coverage_id=1
  36. DEBUG [09:28:30] DbMetadataSource@996: SQL query: SELECT name, oid FROM ps9_rasdaman_collection WHERE id=1
  37. TRACE [09:28:30] DbMetadataSource@1008: Coverage 'mean_summer_airtemp' has range-set data in mean_summer_airtemp:3073.
  38. DEBUG [09:28:30] DbMetadataSource@1025: SQL query: SELECT name, data_type_id, field_table, field_id FROM ps9_range_type_component WHERE coverage_id=1 ORDER BY component_order ASC
  39. TRACE [09:28:30] RangeElement@75: Range Element { name 'value', type 'char'}
  40. DEBUG [09:28:30] DbMetadataSource@1055: Added range element: Range Element { name 'value', type 'char'}
  41. DEBUG [09:28:30] DbMetadataSource@1065: SQL query: SELECT grid_origin FROM ps9_gridded_domain_set WHERE coverage_id=1
  42. DEBUG [09:28:30] DbMetadataSource@1077: Grid origin component: -8.975
  43. DEBUG [09:28:30] DbMetadataSource@1077: Grid origin component: 111.975
  44. TRACE [09:28:30] DbMetadataSource@1080: Gridded coverage 'mean_summer_airtemp' has origin '[-8.975, 111.975]'
  45. DEBUG [09:28:30] DbMetadataSource@1106: SQL query: SELECT id, rasdaman_order FROM ps9_grid_axis WHERE gridded_coverage_id=1 ORDER BY rasdaman_order
  46. DEBUG [09:28:30] DbMetadataSource@1122: Found axis with id 1
  47. DEBUG [09:28:30] DbMetadataSource@1129: SQL query: SELECT offset_vector FROM ps9_rectilinear_axis WHERE grid_axis_id=1
  48. DEBUG [09:28:30] DbMetadataSource@1138: Offset-vector 1 component: 0
  49. DEBUG [09:28:30] DbMetadataSource@1138: Offset-vector 1 component: 0.05
  50. TRACE [09:28:30] DbMetadataSource@1141: Axis 1 has offset-vector [0, 0.05]
  51. DEBUG [09:28:30] DbMetadataSource@1944: RasQL query : select sdom(c)[0]from mean_summer_airtemp AS c where oid(c) = 3073
  52. rasj[0] rasj: rasdaman Java API. rasdaman 6.1test -- generated Tue Jan 6 17:52:20 CET 2009.
  53. rasj[0] Using server http://localhost:7001
  54. TRACE [09:28:30] RasUtil@135: Executing query select sdom(c)[0]from mean_summer_airtemp AS c where oid(c) = 3073
  55. DEBUG [09:28:30] DbMetadataSource@1171: SQL query: SELECT COUNT(*), MAX(coefficient) FROM ps9_vector_coefficients WHERE grid_axis_id=1
  56. TRACE [09:28:30] DbMetadataSource@1190: Axis 0 of coverage 'mean_summer_airtemp' is not irregular.
  57. TRACE [09:28:30] CellDomainElement@51: cell domain 0:885
  58. DEBUG [09:28:30] DbMetadataSource@1204: Added WCPS `cellDomain' element: CellDomainElement#0 [0, 885]
  59. DEBUG [09:28:30] DbMetadataSource@1122: Found axis with id 2
  60. DEBUG [09:28:30] DbMetadataSource@1129: SQL query: SELECT offset_vector FROM ps9_rectilinear_axis WHERE grid_axis_id=2
  61. DEBUG [09:28:30] DbMetadataSource@1138: Offset-vector 2 component: -0.05
  62. DEBUG [09:28:30] DbMetadataSource@1138: Offset-vector 2 component: 0
  63. TRACE [09:28:30] DbMetadataSource@1141: Axis 2 has offset-vector [-0.05, 0]
  64. DEBUG [09:28:30] DbMetadataSource@1944: RasQL query : select sdom(c)[1]from mean_summer_airtemp AS c where oid(c) = 3073
  65. rasj[0] rasj: rasdaman Java API. rasdaman 6.1test -- generated Tue Jan 6 17:52:20 CET 2009.
  66. rasj[0] Using server http://localhost:7001
  67. TRACE [09:28:30] RasUtil@135: Executing query select sdom(c)[1]from mean_summer_airtemp AS c where oid(c) = 3073
  68. DEBUG [09:28:30] DbMetadataSource@1171: SQL query: SELECT COUNT(*), MAX(coefficient) FROM ps9_vector_coefficients WHERE grid_axis_id=2
  69. TRACE [09:28:30] DbMetadataSource@1190: Axis 1 of coverage 'mean_summer_airtemp' is not irregular.
  70. TRACE [09:28:30] CellDomainElement@51: cell domain 0:710
  71. DEBUG [09:28:30] DbMetadataSource@1204: Added WCPS `cellDomain' element: CellDomainElement#1 [0, 710]
  72. DEBUG [09:28:30] Vectors@77: dot-product between [0, 0.05] and [-0.05, 0] is: 0.0
  73. TRACE [09:28:30] DomainElement@117: Domain #0 {Name:Long | Type:x | UoM:degree | [111.975,156.275] | CRS:http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326'}
  74. DEBUG [09:28:30] CoverageMetadata@166: Added WCPS `domain' element: Domain #0 {Name:Long | Type:x | UoM:degree | [111.975,156.275] | CRS:http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326'}
  75. TRACE [09:28:30] DomainElement@117: Domain #1 {Name:Lat | Type:y | UoM:degree | [-44.525,-8.975] | CRS:http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326'}
  76. DEBUG [09:28:30] CoverageMetadata@166: Added WCPS `domain' element: Domain #1 {Name:Lat | Type:y | UoM:degree | [-44.525,-8.975] | CRS:http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326'}
  77. INFO [09:28:30] CrsUtil@1036: EPSG(0):4326/EPSG(0):4326 comparison is *not* cached: need to ask SECORE.
  78. DEBUG [09:28:30] CrsUtil@1042: Checking equivalence of CRSs via http://localhost:8080/def...
  79. DEBUG [09:28:30] SecoreFilter@89: Filter:doFilter()
  80. DEBUG [09:28:30] SecoreFilter@64: Filter:DoBeforeProcessing
  81. DEBUG [09:28:30] SecoreFilter@97: Request URI: /def/equal
  82. DEBUG [09:28:30] SecoreServlet@68: Request URI: http://localhost:8080/def/equal?1=http%3A%2F%2Fkahlua.eecs.jacobs-university.de%3A8080%2Fdef%2Fcrs%2FEPSG%2F0%2F4326&2=http%3A%2F%2Flocalhost%3A8080%2Fdef%2Fcrs%2FEPSG%2F0%2F4326
  83. TRACE [09:28:30] ResolveRequest@88: Parsing URI: http://localhost:8080/def/equal?1=http%3A%2F%2Fkahlua.eecs.jacobs-university.de%3A8080%2Fdef%2Fcrs%2FEPSG%2F0%2F4326&2=http%3A%2F%2Flocalhost%3A8080%2Fdef%2Fcrs%2FEPSG%2F0%2F4326
  84. TRACE [09:28:30] ResolveRequest@88: Parsing URI: http://kahlua.eecs.jacobs-university.de:8080/def/crs/EPSG/0/4326
  85. TRACE [09:28:30] ResolveRequest@88: Parsing URI: http://localhost:8080/def/crs/EPSG/0/4326/
  86. DEBUG [09:28:30] SecoreServlet@71: Set service URI to http://localhost:8080/def/
  87. Saving properties in "/usr/share/tomcat7/.basex"...
  88. /usr/share/tomcat7/.basex could not be written.
  89. DEBUG [09:28:30] BaseX@76: Secore database directory: /var/lib/tomcat7/webapps/secoredb
  90. INFO [09:28:30] BaseX@93: Database connection to userdb successfully opened.
  91. DEBUG [09:28:30] BaseX@95: The database gml doesn't seem to exist
  92. INFO [09:28:30] BaseX@97: Initializing database gml
  93. java.lang.OutOfMemoryError: Java heap space
  94. DEBUG [09:28:30] SecoreFilter@71: Filter:DoAfterProcessing
  95. DEBUG [09:28:30] CrsUtil@1105: http://localhost:8080/def/equal?1=http%3A%2F%2Fkahlua.eecs.jacobs-university.de%3A8080%2Fdef%2Fcrs%2FEPSG%2F0%2F4326&2=http%3A%2F%2Flocalhost%3A8080%2Fdef%2Fcrs%2FEPSG%2F0%2F4326
  96. ERROR [09:28:30] DbMetadataSource@1328: Failed reading metadata
  97. XmlNotValid:
  98. at petascope.util.CrsUtil$CrsUri.checkEquivalence(CrsUtil.java:1137)
  99. at petascope.util.CrsUtil$CrsUri.areEquivalent(CrsUtil.java:1043)
  100. at petascope.wcps.server.core.Bbox.<init>(Bbox.java:116)
  101. at petascope.core.CoverageMetadata.setupMetadata(CoverageMetadata.java:374)
  102. at petascope.core.CoverageMetadata.<init>(CoverageMetadata.java:171)
  103. at petascope.core.DbMetadataSource.read(DbMetadataSource.java:1244)
  104. at petascope.core.DynamicMetadataSource.read(DynamicMetadataSource.java:120)
  105. at petascope.wcps.server.core.CoverageExpr.<init>(CoverageExpr.java:72)
  106. at petascope.wcps.server.core.EncodeDataExpr.<init>(EncodeDataExpr.java:77)
  107. at petascope.wcps.server.core.XmlQuery.startParsing(XmlQuery.java:120)
  108. at petascope.wcps.server.core.ProcessCoveragesRequest.<init>(ProcessCoveragesRequest.java:102)
  109. at petascope.wcps.server.core.Wcps.pcPrepare(Wcps.java:118)
  110. at petascope.wcps.server.core.Wcps.pcPrepare(Wcps.java:112)
  111. at petascope.wcps.server.servlet.WcpsServlet.doPost(WcpsServlet.java:181)
  112. at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
  113. at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
  114. at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
  115. at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
  116. at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
  117. at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
  118. at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
  119. at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
  120. at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
  121. at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
  122. at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
  123. at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
  124. at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1001)
  125. at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:579)
  126. at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
  127. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
  128. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
  129. at java.lang.Thread.run(Thread.java:724)
  130. Caused by: java.lang.NullPointerException
  131. at petascope.util.CrsUtil$CrsUri.checkEquivalence(CrsUtil.java:1121)
  132. ... 31 more
  133. ERROR [09:28:30] WcpsServlet@263: WCPS: error
  134. ERROR [09:28:30] WcpsServlet@264: WCPS: setting response mimetype to text/html; charset=utf-8
  135. ERROR [09:28:30] WcpsServlet@266: WCPS: returning the following error message
  136. WcpsError:
  137. at petascope.wcps.server.core.CoverageExpr.<init>(CoverageExpr.java:84)
  138. at petascope.wcps.server.core.EncodeDataExpr.<init>(EncodeDataExpr.java:77)
  139. at petascope.wcps.server.core.XmlQuery.startParsing(XmlQuery.java:120)
  140. at petascope.wcps.server.core.ProcessCoveragesRequest.<init>(ProcessCoveragesRequest.java:102)
  141. at petascope.wcps.server.core.Wcps.pcPrepare(Wcps.java:118)
  142. at petascope.wcps.server.core.Wcps.pcPrepare(Wcps.java:112)
  143. at petascope.wcps.server.servlet.WcpsServlet.doPost(WcpsServlet.java:181)
  144. at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
  145. at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
  146. at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
  147. at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
  148. at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
  149. at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
  150. at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
  151. at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
  152. at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
  153. at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
  154. at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
  155. at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
  156. at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1001)
  157. at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:579)
  158. at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
  159. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
  160. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
  161. at java.lang.Thread.run(Thread.java:724)
  162. Caused by: XmlNotValid:
  163. at petascope.core.DbMetadataSource.read(DbMetadataSource.java:1333)
  164. at petascope.core.DynamicMetadataSource.read(DynamicMetadataSource.java:120)
  165. at petascope.wcps.server.core.CoverageExpr.<init>(CoverageExpr.java:72)
  166. ... 24 more
  167. Caused by: XmlNotValid:
  168. at petascope.util.CrsUtil$CrsUri.checkEquivalence(CrsUtil.java:1137)
  169. at petascope.util.CrsUtil$CrsUri.areEquivalent(CrsUtil.java:1043)
  170. at petascope.wcps.server.core.Bbox.<init>(Bbox.java:116)
  171. at petascope.core.CoverageMetadata.setupMetadata(CoverageMetadata.java:374)
  172. at petascope.core.CoverageMetadata.<init>(CoverageMetadata.java:171)
  173. at petascope.core.DbMetadataSource.read(DbMetadataSource.java:1244)
  174. ... 26 more
  175. Caused by: java.lang.NullPointerException
  176. at petascope.util.CrsUtil$CrsUri.checkEquivalence(CrsUtil.java:1121)
  177. ... 31 more
  178. ERROR [09:28:30] WcpsServlet@268: WCPS: end of error message
  179. ERROR [09:28:30] WcpsServlet@275: StackTrace:
  180. WcpsError:
  181. at petascope.wcps.server.core.CoverageExpr.<init>(CoverageExpr.java:84)
  182. at petascope.wcps.server.core.EncodeDataExpr.<init>(EncodeDataExpr.java:77)
  183. at petascope.wcps.server.core.XmlQuery.startParsing(XmlQuery.java:120)
  184. at petascope.wcps.server.core.ProcessCoveragesRequest.<init>(ProcessCoveragesRequest.java:102)
  185. at petascope.wcps.server.core.Wcps.pcPrepare(Wcps.java:118)
  186. at petascope.wcps.server.core.Wcps.pcPrepare(Wcps.java:112)
  187. at petascope.wcps.server.servlet.WcpsServlet.doPost(WcpsServlet.java:181)
  188. at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
  189. at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
  190. at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
  191. at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
  192. at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:225)
  193. at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
  194. at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
  195. at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
  196. at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
  197. at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)
  198. at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
  199. at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
  200. at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1001)
  201. at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:579)
  202. at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
  203. at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
  204. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
  205. at java.lang.Thread.run(Thread.java:724)
  206. Caused by: XmlNotValid:
  207. at petascope.core.DbMetadataSource.read(DbMetadataSource.java:1333)
  208. at petascope.core.DynamicMetadataSource.read(DynamicMetadataSource.java:120)
  209. at petascope.wcps.server.core.CoverageExpr.<init>(CoverageExpr.java:72)
  210. ... 24 more
  211. Caused by: XmlNotValid:
  212. at petascope.util.CrsUtil$CrsUri.checkEquivalence(CrsUtil.java:1137)
  213. at petascope.util.CrsUtil$CrsUri.areEquivalent(CrsUtil.java:1043)
  214. at petascope.wcps.server.core.Bbox.<init>(Bbox.java:116)
  215. at petascope.core.CoverageMetadata.setupMetadata(CoverageMetadata.java:374)
  216. at petascope.core.CoverageMetadata.<init>(CoverageMetadata.java:171)
  217. at petascope.core.DbMetadataSource.read(DbMetadataSource.java:1244)
  218. ... 26 more
  219. Caused by: java.lang.NullPointerException
  220. at petascope.util.CrsUtil$CrsUri.checkEquivalence(CrsUtil.java:1121)
  221. ... 31 more
  222. ERROR [09:28:30] WcpsServlet@278: WCPS: done with error
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