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- from nipype.interfaces.dcm2nii import Dcm2niix
- from tempfile import mkdtemp
- import sys
- def main():
- dcmpath = sys.argv[-1]
- outdir = mkdtemp()
- # interface
- x = Dcm2niix()
- x.inputs.source_dir = dcmpath
- x.inputs.bids_format = True
- x.inputs.output_dir = outdir
- print(outdir)
- res = x.run()
- import pdb; pdb.set_trace()
- if __name__ == "__main__":
- if len(sys.argv) != 2:
- print("Provide DICOM directory path")
- sys.exit(1)
- main()
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