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fortran in sage-5.0.1 notebook fails

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Jun 23rd, 2012
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  1. error: Command "/Users/bael/sage/sage-5.0.1/local/bin/sage-g77_shared -Wall /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7/fortran_module_0module.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7/fortranobject.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o -L"Using built-in specs.
  2. COLLECT_GCC=gfortran
  3. COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper
  4. /Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/x86_64-apple-darwin10.8.0/4.6.3" -lgfortran -o ./fortran_module_0.so" failed with exit status 1
  5. Found executable /Users/bael/sage/sage-5.0.1/local/bin/sage-g77_shared
  6. Found executable /usr/bin/ar
  7. Found executable /usr/bin/ranlib
  8. Could not locate executable xlf95
  9. gnu: no Fortran 90 compiler found
  10. Found executable /usr/bin/ld
  11. gnu: no Fortran 90 compiler found
  12. Using built-in specs.
  13. COLLECT_GCC=gfortran
  14. COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper
  15. Target: x86_64-apple-darwin10.8.0
  16. Configured with: ../src/configure --prefix=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-local-prefix=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-gmp=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-mpfr=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-mpc=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-system-zlib --disable-multilib
  17. Thread model: posix
  18. gcc version 4.6.3 (GCC)
  19. COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.7' '-v' '-Zbundle' '-undefined' 'dynamic_lookup' '-Wall' '-ffixed-form' '-fno-second-underscore' '-fPIC' '-O3' '-funroll-loops' '-I' '/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7' '-I' '/Users/bael/sage/sage-5.0.1/local/lib/python2.7/site-packages/numpy/core/include' '-I' '/Users/bael/sage/sage-5.0.1/local/include/python2.7' '-c' '-c' '-o' '/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o' '-mtune=core2'
  20. /Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/f951 /Users/bael/.sage//temp/Baels_MacBook_Air.local/2689//tmp_0.f -ffixed-form -I /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7 -I /Users/bael/sage/sage-5.0.1/local/lib/python2.7/site-packages/numpy/core/include -I /Users/bael/sage/sage-5.0.1/local/include/python2.7 -fPIC -quiet -dumpbase tmp_0.f -mmacosx-version-min=10.7 -mtune=core2 -auxbase-strip /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o -O3 -Wall -version -ffixed-form -fno-second-underscore -fPIC -funroll-loops -fintrinsic-modules-path /Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/finclude -o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T//ccTbl5jw.s
  21. GNU Fortran (GCC) version 4.6.3 (x86_64-apple-darwin10.8.0)
  22. compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR version 3.1.0-p8, MPC version 1.0.0dev
  23. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
  24. GNU Fortran (GCC) version 4.6.3 (x86_64-apple-darwin10.8.0)
  25. compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR version 3.1.0-p8, MPC version 1.0.0dev
  26. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
  27. COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.7' '-v' '-Zbundle' '-undefined' 'dynamic_lookup' '-Wall' '-ffixed-form' '-fno-second-underscore' '-fPIC' '-O3' '-funroll-loops' '-I' '/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7' '-I' '/Users/bael/sage/sage-5.0.1/local/lib/python2.7/site-packages/numpy/core/include' '-I' '/Users/bael/sage/sage-5.0.1/local/include/python2.7' '-c' '-c' '-o' '/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o' '-mtune=core2'
  28. as -arch x86_64 -force_cpusubtype_ALL -o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T//ccTbl5jw.s
  29. COMPILER_PATH=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/:/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/
  30. LIBRARY_PATH=/Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/:/Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/:/Users/bael/sage/sage-5.0.1/local/lib/:/Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/x86_64-apple-darwin10.8.0/4.6.3/../../../:/usr/lib/
  31. COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.7' '-v' '-Zbundle' '-undefined' 'dynamic_lookup' '-Wall' '-ffixed-form' '-fno-second-underscore' '-fPIC' '-O3' '-funroll-loops' '-I' '/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7' '-I' '/Users/bael/sage/sage-5.0.1/local/lib/python2.7/site-packages/numpy/core/include' '-I' '/Users/bael/sage/sage-5.0.1/local/include/python2.7' '-c' '-c' '-o' '/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o' '-mtune=core2'
  32. Driving: gfortran -mmacosx-version-min=10.7 -fPIC -v -bundle -undefined dynamic_lookup -Wall /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7/fortran_module_0module.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7/fortranobject.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o -LUsing built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper /Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/x86_64-apple-darwin10.8.0/4.6.3 -l gfortran -o ./fortran_module_0.so -l gfortran -shared-libgcc
  33. gfortran: error: built-in: No such file or directory
  34. gfortran: error: specs.: No such file or directory
  35. gfortran: error: COLLECT_GCC=gfortran: No such file or directory
  36. gfortran: error: COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper: No such file or directory
  37. Using built-in specs.
  38. COLLECT_GCC=gfortran
  39. COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper
  40. Target: x86_64-apple-darwin10.8.0
  41. Configured with: ../src/configure --prefix=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-local-prefix=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-gmp=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-mpfr=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-mpc=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-system-zlib --disable-multilib
  42. Thread model: posix
  43. gcc version 4.6.3 (GCC)
  44. Driving: gfortran -mmacosx-version-min=10.7 -fPIC -v -bundle -undefined dynamic_lookup -Wall /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7/fortran_module_0module.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/src.macosx-10.6-x86_64-2.7/fortranobject.o /var/folders/f4/881mfg491yxdf3zx37ynf5580000gn/T/tmpSLdvBd/Users/bael/.sage/temp/Baels_MacBook_Air.local/2689/tmp_0.o -LUsing built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper /Users/bael/sage/sage-5.0.1/local/bin/../lib/gcc/x86_64-apple-darwin10.8.0/4.6.3 -l gfortran -o ./fortran_module_0.so -l gfortran -shared-libgcc
  45. gfortran: error: built-in: No such file or directory
  46. gfortran: error: specs.: No such file or directory
  47. gfortran: error: COLLECT_GCC=gfortran: No such file or directory
  48. gfortran: error: COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper: No such file or directory
  49. Using built-in specs.
  50. COLLECT_GCC=gfortran
  51. COLLECT_LTO_WRAPPER=/Users/bael/sage/sage-5.0.1/local/bin/../libexec/gcc/x86_64-apple-darwin10.8.0/4.6.3/lto-wrapper
  52. Target: x86_64-apple-darwin10.8.0
  53. Configured with: ../src/configure --prefix=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-local-prefix=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-gmp=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-mpfr=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-mpc=/Users/buildbot/build/sage/bsd-1/bsd_64_binary/build/sage-5.0.1.rc0/local --with-system-zlib --disable-multilib
  54. Thread model: posix
  55. gcc version 4.6.3 (GCC)
  56.  
  57. Traceback (most recent call last): REAL*8 A(N)
  58. File "", line 1, in <module>
  59.  
  60. File "/Users/bael/sage/sage-5.0.1/devel/sagenb/sagenb/misc/support.py", line 481, in syseval
  61. return system.eval(cmd, sage_globals, locals = sage_globals)
  62. File "/Users/bael/sage/sage-5.0.1/local/lib/python2.7/site-packages/sage/misc/inline_fortran.py", line 91, in eval
  63. os.unlink(name + '.so')
  64. OSError: [Errno 2] No such file or directory: 'fortran_module_0.so'
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