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MicroManager Problem Report Shutters

jblugagne
Jan 28th, 2019
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  1. #Report Format Version: 2.1
  2. #User Name: null
  3. #Organization: null
  4. #User e-mail: null
  5. #User Description:
  6. #MAC: a0-48-1c-ab-cf-42
  7. #Host: RM-HP
  8. #User: DunlopLab
  9. #Pid: 5056
  10. #Starting Config File: C:\Users\DunlopLab\Documents\MicroManager\BernieConfiguration.cfg
  11. #Config Changed: no
  12. ***** BEGIN Starting Config (C:\Users\DunlopLab\Documents\MicroManager\BernieConfiguration.cfg) *****
  13. # Generated by Configurator on Thu Jan 17 20:40:26 EST 2019
  14.  
  15.  
  16.  
  17. # Reset
  18.  
  19. Property,Core,Initialize,0
  20.  
  21.  
  22.  
  23. # Devices
  24.  
  25. Device,COM5,SerialManager,COM5
  26.  
  27. Device,COM4,SerialManager,COM4
  28.  
  29. Device,AndorCamera,Andor,Andor
  30.  
  31. Device,TIScope,NikonTI,TIScope
  32.  
  33. Device,TIEpiShutter,NikonTI,TIEpiShutter
  34.  
  35. Device,TIDiaShutter,NikonTI,TIDiaShutter
  36.  
  37. Device,TINosePiece,NikonTI,TINosePiece
  38.  
  39. Device,TIFilterBlock1,NikonTI,TIFilterBlock1
  40.  
  41. Device,TILightPath,NikonTI,TILightPath
  42.  
  43. Device,TIZDrive,NikonTI,TIZDrive
  44.  
  45. Device,TIPFSOffset,NikonTI,TIPFSOffset
  46.  
  47. Device,TIPFSStatus,NikonTI,TIPFSStatus
  48.  
  49. Device,LumencorSola,LumencorSpectra,Spectra
  50.  
  51. Device,LudlController,Ludl,LudlController
  52.  
  53. Device,XYStage,Ludl,XYStage
  54.  
  55.  
  56.  
  57. # Pre-init settings for devices
  58.  
  59. Property,COM5,AnswerTimeout,500.0000
  60.  
  61. Property,COM5,BaudRate,9600
  62.  
  63. Property,COM5,DataBits,8
  64.  
  65. Property,COM5,DelayBetweenCharsMs,0.0000
  66.  
  67. Property,COM5,Fast USB to Serial,Disable
  68.  
  69. Property,COM5,Handshaking,Off
  70.  
  71. Property,COM5,Parity,None
  72.  
  73. Property,COM5,StopBits,2
  74.  
  75. Property,COM5,Verbose,1
  76.  
  77. Property,COM4,AnswerTimeout,500.0000
  78.  
  79. Property,COM4,BaudRate,9600
  80.  
  81. Property,COM4,DataBits,8
  82.  
  83. Property,COM4,DelayBetweenCharsMs,0.0000
  84.  
  85. Property,COM4,Fast USB to Serial,Disable
  86.  
  87. Property,COM4,Handshaking,Off
  88.  
  89. Property,COM4,Parity,None
  90.  
  91. Property,COM4,StopBits,1
  92.  
  93. Property,COM4,Verbose,1
  94.  
  95. Property,AndorCamera,Camera,| Clara | DR328_C02~G | 2187 |
  96.  
  97. Property,LumencorSola,Port,COM4
  98.  
  99. Property,LumencorSola,SetLE_Type,Sola
  100.  
  101. Property,LudlController,Port,COM5
  102.  
  103.  
  104.  
  105. # Pre-init settings for COM ports
  106.  
  107.  
  108.  
  109. # Hub (parent) references
  110.  
  111. Parent,TIEpiShutter,TIScope
  112.  
  113. Parent,TIDiaShutter,TIScope
  114.  
  115. Parent,TINosePiece,TIScope
  116.  
  117. Parent,TIFilterBlock1,TIScope
  118.  
  119. Parent,TILightPath,TIScope
  120.  
  121. Parent,TIZDrive,TIScope
  122.  
  123. Parent,TIPFSOffset,TIScope
  124.  
  125. Parent,TIPFSStatus,TIScope
  126.  
  127.  
  128.  
  129. # Initialize
  130.  
  131. Property,Core,Initialize,1
  132.  
  133.  
  134.  
  135. # Delays
  136.  
  137. Delay,TIFilterBlock1,250.0
  138.  
  139.  
  140.  
  141. # Focus directions
  142.  
  143.  
  144.  
  145. # Roles
  146.  
  147. Property,Core,Camera,AndorCamera
  148.  
  149. Property,Core,Shutter,TIDiaShutter
  150.  
  151. Property,Core,Focus,TIZDrive
  152.  
  153. Property,Core,AutoShutter,1
  154.  
  155.  
  156.  
  157. # Camera-synchronized devices
  158.  
  159.  
  160.  
  161. # Labels
  162.  
  163. # TINosePiece
  164.  
  165. Label,TINosePiece,5,6-Unknown
  166.  
  167. Label,TINosePiece,4,5-Unknown
  168.  
  169. Label,TINosePiece,3,4-Unknown
  170.  
  171. Label,TINosePiece,2,3-(Achromat) 20x NA 0.40 Dry
  172.  
  173. Label,TINosePiece,1,2-(Achromat) 40x NA 0.65 Dry
  174.  
  175. Label,TINosePiece,0,1-Plan Apo 100x NA 1.40 Oil
  176.  
  177. # TIFilterBlock1
  178.  
  179. Label,TIFilterBlock1,5,6-59017
  180.  
  181. Label,TIFilterBlock1,4,5-TRITC
  182.  
  183. Label,TIFilterBlock1,3,4-YFPHQ
  184.  
  185. Label,TIFilterBlock1,2,3-GFPHQ
  186.  
  187. Label,TIFilterBlock1,1,2-CFPHQ
  188.  
  189. Label,TIFilterBlock1,0,1------
  190.  
  191. # TILightPath
  192.  
  193. Label,TILightPath,3,4-Left80
  194.  
  195. Label,TILightPath,2,3-Right100
  196.  
  197. Label,TILightPath,1,2-Left100
  198.  
  199. Label,TILightPath,0,1-Eye100
  200.  
  201.  
  202.  
  203. # Configuration presets
  204.  
  205. # Group: Imaging Channel
  206.  
  207. # Preset: YFP
  208.  
  209. ConfigGroup,Imaging Channel,YFP,TIFilterBlock1,Label,4-YFPHQ
  210.  
  211. ConfigGroup,Imaging Channel,YFP,Core,Shutter,TIEpiShutter
  212.  
  213.  
  214.  
  215. # Preset: CFP
  216.  
  217. ConfigGroup,Imaging Channel,CFP,TIFilterBlock1,Label,2-CFPHQ
  218.  
  219. ConfigGroup,Imaging Channel,CFP,Core,Shutter,TIEpiShutter
  220.  
  221.  
  222.  
  223. # Preset: RFP
  224.  
  225. ConfigGroup,Imaging Channel,RFP,TIFilterBlock1,Label,5-TRITC
  226.  
  227. ConfigGroup,Imaging Channel,RFP,Core,Shutter,TIEpiShutter
  228.  
  229.  
  230.  
  231. # Preset: GFP
  232.  
  233. ConfigGroup,Imaging Channel,GFP,TIFilterBlock1,Label,3-GFPHQ
  234.  
  235. ConfigGroup,Imaging Channel,GFP,Core,Shutter,TIEpiShutter
  236.  
  237.  
  238.  
  239. # Preset: Trans
  240.  
  241. ConfigGroup,Imaging Channel,Trans,TIFilterBlock1,Label,1------
  242.  
  243. ConfigGroup,Imaging Channel,Trans,Core,Shutter,TIDiaShutter
  244.  
  245.  
  246.  
  247. # Preset: FRET
  248.  
  249. ConfigGroup,Imaging Channel,FRET,TIFilterBlock1,Label,6-59017
  250.  
  251. ConfigGroup,Imaging Channel,FRET,Core,Shutter,TIEpiShutter
  252.  
  253.  
  254.  
  255.  
  256.  
  257. # Group: Objective
  258.  
  259. # Preset: 100x
  260.  
  261. ConfigGroup,Objective,100x,TINosePiece,Label,1-Plan Apo 100x NA 1.40 Oil
  262.  
  263.  
  264.  
  265. # Preset: 40x
  266.  
  267. ConfigGroup,Objective,40x,TINosePiece,Label,2-(Achromat) 40x NA 0.65 Dry
  268.  
  269.  
  270.  
  271. # Preset: 20x
  272.  
  273. ConfigGroup,Objective,20x,TINosePiece,Label,3-(Achromat) 20x NA 0.40 Dry
  274.  
  275.  
  276.  
  277.  
  278.  
  279.  
  280.  
  281. # Group: Camera Settings
  282.  
  283. # Preset: NIS-Elements
  284.  
  285. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,AD_Converter,2. 14bit
  286.  
  287. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,Binning,2
  288.  
  289. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,CCDTemperature continuous update,On
  290.  
  291. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,CCDTemperatureSetPoint,-20
  292.  
  293. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,Output_Amplifier,Normal
  294.  
  295. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,Overlap,On
  296.  
  297. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,ReadoutMode,10.000 MHz
  298.  
  299. ConfigGroup,Camera Settings,NIS-Elements,AndorCamera,Trigger,Internal
  300.  
  301.  
  302.  
  303.  
  304.  
  305.  
  306.  
  307. # PixelSize settings
  308.  
  309.  
  310.  
  311. ***** END Starting Config (C:\Users\DunlopLab\Documents\MicroManager\BernieConfiguration.cfg) *****
  312. ***** BEGIN Captured Log *****
  313. 2019-01-28T11:50:32.362348 tid4804 [IFO,LogManager] Added secondary log file C:\Users\DunlopLab\MMProblemReport\CoreLogCapture.txt with log level trace
  314.  
  315. 2019-01-28T11:50:32.362348 tid4804 [IFO,App] Problem Report: Start of log capture
  316.  
  317. 2019-01-28T11:50:32.393548 tid3416 [IFO,App] ***** BEGIN Problem Report System Info *****
  318.  
  319. 2019-01-28T11:50:32.393548 tid3416 [IFO,App] MMStudio version: 2.0.0-gamma1 20190114
  320.  
  321. [ ] Core version: MMCore version 8.7.1
  322.  
  323. [ ] Core device API version: Device API version 69, Module API version 10
  324.  
  325. 2019-01-28T11:50:32.393548 tid3416 [IFO,App] Operating system: Windows 7 (amd64) 6.1
  326.  
  327. 2019-01-28T11:50:32.393548 tid3416 [IFO,App] Java version: 1.8.0_152
  328.  
  329. [ ] Java runtime: Java(TM) SE Runtime Environment 1.8.0_152-b16
  330.  
  331. [ ] JVM: Java HotSpot(TM) 64-Bit Server VM; mixed mode
  332.  
  333. [ ] JVM architecture: 64-bit
  334.  
  335. 2019-01-28T11:50:32.424748 tid3416 [IFO,App] JVM arguments:
  336.  
  337. [ ] -XX:SoftRefLRUPolicyMSPerMB=1000000000000
  338.  
  339. [ ] -Dsun.java2d.dpiaware=false
  340.  
  341. [ ] -Xmx2000m
  342.  
  343. [ ] -XX:MaxDirectMemorySize=1000g
  344.  
  345. [ ] (End JVM args)
  346.  
  347. 2019-01-28T11:50:32.424748 tid3416 [IFO,App] Java system properties:
  348.  
  349. [ ] awt.toolkit = sun.awt.windows.WToolkit
  350.  
  351. [ ] file.encoding = Cp1252
  352.  
  353. [ ] file.encoding.pkg = sun.io
  354.  
  355. [ ] file.separator = \
  356.  
  357. [ ] java.awt.graphicsenv = sun.awt.Win32GraphicsEnvironment
  358.  
  359. [ ] java.awt.printerjob = sun.awt.windows.WPrinterJob
  360.  
  361. [ ] java.class.path (split at ';') =
  362.  
  363. [ ] C:\PROGRA~1\MICRO-~1.0GA\ij.jar
  364.  
  365. [ ] java.class.version = 52.0
  366.  
  367. [ ] java.endorsed.dirs = C:\Program Files\Micro-Manager-2.0gamma\jre\lib\endorsed
  368.  
  369. [ ] java.ext.dirs = C:\Program Files\Micro-Manager-2.0gamma\jre\lib\ext;C:\windows\Sun\Java\lib\ext
  370.  
  371. [ ] java.home = C:\Program Files\Micro-Manager-2.0gamma\jre
  372.  
  373. [ ] java.io.tmpdir = C:\Users\DUNLOP~1\AppData\Local\Temp\
  374.  
  375. [ ] java.library.path (split at ';') =
  376.  
  377. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\bin
  378.  
  379. [ ] C:\windows\Sun\Java\bin
  380.  
  381. [ ] C:\windows\system32
  382.  
  383. [ ] C:\windows
  384.  
  385. [ ] C:\Program Files (x86)\Common Files\Oracle\Java\javapath
  386.  
  387. [ ] C:\ProgramData\Oracle\Java\javapath
  388.  
  389. [ ] c:\Program Files (x86)\Intel\iCLS Client\
  390.  
  391. [ ] c:\Program Files\Intel\iCLS Client\
  392.  
  393. [ ] C:\windows\system32
  394.  
  395. [ ] C:\windows
  396.  
  397. [ ] C:\windows\System32\Wbem
  398.  
  399. [ ] C:\windows\System32\WindowsPowerShell\v1.0\
  400.  
  401. [ ] c:\Program Files (x86)\Hewlett-Packard\HP Performance Advisor
  402.  
  403. [ ] C:\Program Files\Intel\Intel(R) Management Engine Components\DAL
  404.  
  405. [ ] C:\Program Files\Intel\Intel(R) Management Engine Components\IPT
  406.  
  407. [ ] C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL
  408.  
  409. [ ] C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT
  410.  
  411. [ ] .
  412.  
  413. [ ] java.runtime.name = Java(TM) SE Runtime Environment
  414.  
  415. [ ] java.runtime.version = 1.8.0_152-b16
  416.  
  417. [ ] java.specification.name = Java Platform API Specification
  418.  
  419. [ ] java.specification.vendor = Oracle Corporation
  420.  
  421. [ ] java.specification.version = 1.8
  422.  
  423. [ ] java.vendor = Oracle Corporation
  424.  
  425. [ ] java.vendor.url = http://java.oracle.com/
  426.  
  427. [ ] java.vendor.url.bug = http://bugreport.sun.com/bugreport/
  428.  
  429. [ ] java.version = 1.8.0_152
  430.  
  431. [ ] java.vm.info = mixed mode
  432.  
  433. [ ] java.vm.name = Java HotSpot(TM) 64-Bit Server VM
  434.  
  435. [ ] java.vm.specification.name = Java Virtual Machine Specification
  436.  
  437. [ ] java.vm.specification.vendor = Oracle Corporation
  438.  
  439. [ ] java.vm.specification.version = 1.8
  440.  
  441. [ ] java.vm.vendor = Oracle Corporation
  442.  
  443. [ ] java.vm.version = 25.152-b16
  444.  
  445. [ ] line.separator =
  446.  
  447. [ ]
  448.  
  449. [ ] os.arch = amd64
  450.  
  451. [ ] os.name = Windows 7
  452.  
  453. [ ] os.version = 6.1
  454.  
  455. [ ] path.separator = ;
  456.  
  457. [ ] sun.arch.data.model = 64
  458.  
  459. [ ] sun.awt.enableExtraMouseButtons = true
  460.  
  461. [ ] sun.awt.exception.handler = org.micromanager.internal.diagnostics.ThreadExceptionLogger
  462.  
  463. [ ] sun.boot.class.path (split at ';') =
  464.  
  465. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\resources.jar
  466.  
  467. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\rt.jar
  468.  
  469. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\sunrsasign.jar
  470.  
  471. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\jsse.jar
  472.  
  473. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\jce.jar
  474.  
  475. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\charsets.jar
  476.  
  477. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\lib\jfr.jar
  478.  
  479. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\classes
  480.  
  481. [ ] sun.boot.library.path (split at ';') =
  482.  
  483. [ ] C:\Program Files\Micro-Manager-2.0gamma\jre\bin
  484.  
  485. [ ] sun.cpu.endian = little
  486.  
  487. [ ] sun.cpu.isalist = amd64
  488.  
  489. [ ] sun.desktop = windows
  490.  
  491. [ ] sun.io.unicode.encoding = UnicodeLittle
  492.  
  493. [ ] sun.java.command = ij.ImageJ -ijpath C:\PROGRA~1\MICRO-~1.0GA\
  494.  
  495. [ ] sun.java.launcher = SUN_STANDARD
  496.  
  497. [ ] sun.java2d.dpiaware = false
  498.  
  499. [ ] sun.jnu.encoding = Cp1252
  500.  
  501. [ ] sun.management.compiler = HotSpot 64-Bit Tiered Compilers
  502.  
  503. [ ] sun.os.patch.level = Service Pack 1
  504.  
  505. [ ] user.country = US
  506.  
  507. [ ] user.dir = C:\Program Files\Micro-Manager-2.0gamma
  508.  
  509. [ ] user.home = C:\Users\DunlopLab
  510.  
  511. [ ] user.language = en
  512.  
  513. [ ] user.name = DunlopLab
  514.  
  515. [ ] user.script =
  516.  
  517. [ ] user.timezone = America/New_York
  518.  
  519. [ ] user.variant =
  520.  
  521. [ ] (End Java system properties)
  522.  
  523. 2019-01-28T11:50:32.424748 tid3416 [IFO,App] Processors available to JVM: 8
  524.  
  525. 2019-01-28T11:50:32.440348 tid3416 [IFO,App] Total physical memory (caveats apply if JVM is 32-bit): 34279854080 (31.9 GiB)
  526.  
  527. [ ] Committed virtual memory size: 1063854080 (1014.6 MiB)
  528.  
  529. [ ] Free physical memory (may be meaningless if JVM is 32-bit): 30469328896 (28.4 GiB)
  530.  
  531. 2019-01-28T11:50:32.455948 tid3416 [IFO,App] JVM heap memory usage: used = 102122944 (97.4 MiB); committed = 411041792 (392.0 MiB); max = 1864368128 (1.7 GiB)
  532.  
  533. [ ] JVM non-heap memory usage: used = 61975720 (59.1 MiB); committed = 63504384 (60.6 MiB); max = unavailable
  534.  
  535. 2019-01-28T11:50:32.455948 tid3416 [IFO,App] All Java threads:
  536.  
  537. [ ] id 2 ("Reference Handler"): WAITING
  538.  
  539. [ ] id 3 ("Finalizer"): WAITING
  540.  
  541. [ ] id 4 ("Signal Dispatcher"): RUNNABLE
  542.  
  543. [ ] id 5 ("Attach Listener"): RUNNABLE
  544.  
  545. [ ] id 12 ("RMI TCP Accept-0"): RUNNABLE
  546.  
  547. [ ] id 13 ("RMI Reaper"): WAITING
  548.  
  549. [ ] id 14 ("GC Daemon"): TIMED_WAITING
  550.  
  551. [ ] id 15 ("Java2D Disposer"): WAITING
  552.  
  553. [ ] id 16 ("AWT-Shutdown"): WAITING
  554.  
  555. [ ] id 17 ("AWT-Windows"): RUNNABLE
  556.  
  557. [ ] id 19 ("AWT-EventQueue-0"): WAITING
  558.  
  559. [ ] id 22 ("D3D Screen Updater"): TIMED_WAITING
  560.  
  561. [ ] id 23 ("DestroyJavaVM"): RUNNABLE
  562.  
  563. [ ] id 26 ("User Profile Saver Pool Thread 0"): TIMED_WAITING
  564.  
  565. [ ] id 27 ("TimerQueue"): TIMED_WAITING
  566.  
  567. [ ] id 30 ("EDTHangLogger timer"): TIMED_WAITING
  568.  
  569. [ ] id 31 ("Thread-6"): TIMED_WAITING
  570.  
  571. [ ] id 33 ("BeanShell interpreter"): TIMED_WAITING
  572.  
  573. [ ] id 74 ("SwingWorker-pool-2-thread-1"): RUNNABLE
  574.  
  575. [ ] (End all Java threads)
  576.  
  577. 2019-01-28T11:50:32.455948 tid3416 [IFO,App] Deadlocked Java threads: none detected
  578.  
  579. 2019-01-28T11:50:32.455948 tid3416 [IFO,App] MMCore version: MMCore version 8.7.1
  580.  
  581. [ ] Circular buffer size (MB): 250
  582.  
  583. 2019-01-28T11:50:32.455948 tid3416 [IFO,App] Core property cache ("system state cache") contents:
  584.  
  585. [ ] COM5/AnswerTimeout = 500.0000
  586.  
  587. [ ] COM5/BaudRate = 9600
  588.  
  589. [ ] COM5/DataBits = 8
  590.  
  591. [ ] COM5/DelayBetweenCharsMs = 0.0000
  592.  
  593. [ ] COM5/Description [RO] = Serial port driver (boost:asio)
  594.  
  595. [ ] COM5/Fast USB to Serial = Disable
  596.  
  597. [ ] COM5/Handshaking = Off
  598.  
  599. [ ] COM5/Name [RO] = COM5
  600.  
  601. [ ] COM5/Parity = None
  602.  
  603. [ ] COM5/StopBits = 2
  604.  
  605. [ ] COM5/Verbose = 1
  606.  
  607. [ ] COM4/AnswerTimeout = 500.0000
  608.  
  609. [ ] COM4/BaudRate = 9600
  610.  
  611. [ ] COM4/DataBits = 8
  612.  
  613. [ ] COM4/DelayBetweenCharsMs = 0.0000
  614.  
  615. [ ] COM4/Description [RO] = Serial port driver (boost:asio)
  616.  
  617. [ ] COM4/Fast USB to Serial = Disable
  618.  
  619. [ ] COM4/Handshaking = Off
  620.  
  621. [ ] COM4/Name [RO] = COM4
  622.  
  623. [ ] COM4/Parity = None
  624.  
  625. [ ] COM4/StopBits = 1
  626.  
  627. [ ] COM4/Verbose = 1
  628.  
  629. [ ] AndorCamera/1. Camera Information : | Type | Model | Serial No. | [RO] = | Clara | DR328_C02~G | 2187 |
  630.  
  631. [ ] AndorCamera/AD_Converter = 2. 14bit
  632.  
  633. [ ] AndorCamera/ActualInterval-ms [RO] = 91.75
  634.  
  635. [ ] AndorCamera/Advanced | Snap Image Additional Delay (ms) = 0
  636.  
  637. [ ] AndorCamera/Advanced | Snap Image Timing Mode = Delay for Exposure
  638.  
  639. [ ] AndorCamera/Binning = 2
  640.  
  641. [ ] AndorCamera/CCDTemperature [RO] = 26
  642.  
  643. [ ] AndorCamera/CCDTemperature Help [RO] = Wait for temperature to stabilize before acquisition.
  644.  
  645. [ ] AndorCamera/CCDTemperature continuous update = On
  646.  
  647. [ ] AndorCamera/CCDTemperatureSetPoint = -20
  648.  
  649. [ ] AndorCamera/Camera = | Clara | DR328_C02~G | 2187 |
  650.  
  651. [ ] AndorCamera/CoolerMode = Fan off at shutdown
  652.  
  653. [ ] AndorCamera/Description [RO] = Andor camera adapter
  654.  
  655. [ ] AndorCamera/Exposure = 10.0000
  656.  
  657. [ ] AndorCamera/FanMode = Full
  658.  
  659. [ ] AndorCamera/Isolated Crop Mode = Off
  660.  
  661. [ ] AndorCamera/KeepCleanTime [RO] = 6.85
  662.  
  663. [ ] AndorCamera/Output_Amplifier = Normal
  664.  
  665. [ ] AndorCamera/Overlap = On
  666.  
  667. [ ] AndorCamera/Overlap Help [RO] = Should only turn on Overlap if using Burst or Live mode.
  668.  
  669. [ ] AndorCamera/PixelType = 16bit
  670.  
  671. [ ] AndorCamera/Pre-Amp-Gain = 1.5x
  672.  
  673. [ ] AndorCamera/ReadMode = Image
  674.  
  675. [ ] AndorCamera/ReadoutMode = 10.000 MHz
  676.  
  677. [ ] AndorCamera/ReadoutTime [RO] = 84.90
  678.  
  679. [ ] AndorCamera/Region of Interest = Full Image
  680.  
  681. [ ] AndorCamera/Shutter = Open
  682.  
  683. [ ] AndorCamera/Shutter Closing Time = 20
  684.  
  685. [ ] AndorCamera/Shutter Opening Time = 20
  686.  
  687. [ ] AndorCamera/Shutter TTL Value = High to Open
  688.  
  689. [ ] AndorCamera/SpuriousNoiseFilter = None
  690.  
  691. [ ] AndorCamera/SpuriousNoiseFilterDescription [RO] = Spurious Noise Filter is Off
  692.  
  693. [ ] AndorCamera/SpuriousNoiseFilterThreshold = 0.0000
  694.  
  695. [ ] AndorCamera/TimeOut = 10000
  696.  
  697. [ ] AndorCamera/TransposeCorrection = 0
  698.  
  699. [ ] AndorCamera/TransposeMirrorX = 0
  700.  
  701. [ ] AndorCamera/TransposeMirrorY = 0
  702.  
  703. [ ] AndorCamera/TransposeXY = 0
  704.  
  705. [ ] AndorCamera/Trigger = Internal
  706.  
  707. [ ] AndorCamera/VerticalSpeed (microseconds) [RO] =
  708.  
  709. [ ] TIScope/DeviceAddress [RO] = USB_DEVICE(1)
  710.  
  711. [ ] TIScope/DeviceIndex [RO] = 1
  712.  
  713. [ ] TIScope/DriverVersion [RO] = micusb.sys 3.0.1.9
  714.  
  715. [ ] TIScope/FirmwareVersion [RO] = Ti-E V4.00
  716.  
  717. [ ] TIScope/SoftwareVersion [RO] = 4.4.1.728
  718.  
  719. [ ] TIEpiShutter/Name [RO] = TIEpiShutter
  720.  
  721. [ ] TIEpiShutter/State = 0
  722.  
  723. [ ] TIDiaShutter/Name [RO] = TIDiaShutter
  724.  
  725. [ ] TIDiaShutter/State = 0
  726.  
  727. [ ] TINosePiece/ExtraDelayMs = 0.0000
  728.  
  729. [ ] TINosePiece/Label = 1-Plan Apo 100x NA 1.40 Oil
  730.  
  731. [ ] TINosePiece/Name [RO] = TINosePiece
  732.  
  733. [ ] TINosePiece/State = 0
  734.  
  735. [ ] TIFilterBlock1/ExtraDelayMs = 250.0000
  736.  
  737. [ ] TIFilterBlock1/Label = 1------
  738.  
  739. [ ] TIFilterBlock1/Name [RO] = TIFilterBlock1
  740.  
  741. [ ] TIFilterBlock1/State = 0
  742.  
  743. [ ] TILightPath/ExtraDelayMs = 0.0000
  744.  
  745. [ ] TILightPath/Label = 1-Eye100
  746.  
  747. [ ] TILightPath/Name [RO] = TILightPath
  748.  
  749. [ ] TILightPath/State = 0
  750.  
  751. [ ] TIZDrive/Name [RO] = TIZDrive
  752.  
  753. [ ] TIZDrive/Speed = 1
  754.  
  755. [ ] TIZDrive/Tolerance = 0
  756.  
  757. [ ] TIPFSOffset/Name [RO] = TIPFSOffset
  758.  
  759. [ ] TIPFSOffset/Position = 57.2500
  760.  
  761. [ ] TIPFSStatus/FullFocusTimeoutMs = 5000.0000
  762.  
  763. [ ] TIPFSStatus/FullFocusWaitAfterLockMs = 0.0000
  764.  
  765. [ ] TIPFSStatus/Name [RO] = TIPFSStatus
  766.  
  767. [ ] TIPFSStatus/State = Off
  768.  
  769. [ ] TIPFSStatus/Status [RO] = Out of focus search range
  770.  
  771. [ ] LumencorSola/Description [RO] = Lumencor Spectra Light Engine
  772.  
  773. [ ] LumencorSola/Name [RO] = Spectra
  774.  
  775. [ ] LumencorSola/Port = COM4
  776.  
  777. [ ] LumencorSola/SetLE_Type = Sola
  778.  
  779. [ ] LumencorSola/State = 0
  780.  
  781. [ ] LumencorSola/White_Enable = 0
  782.  
  783. [ ] LumencorSola/White_Level = 100
  784.  
  785. [ ] LudlController/Description [RO] = Ludl Controller (Mac 2000/5000)
  786.  
  787. [ ] LudlController/Name [RO] = LudlController
  788.  
  789. [ ] LudlController/Port = COM5
  790.  
  791. [ ] LudlController/Reset = Operate
  792.  
  793. [ ] LudlController/TransmissionDelay = 0
  794.  
  795. [ ] LudlController/Version [RO] = Version no. : 12.200 MAC6000 Interface with USB/ETH
  796.  
  797. [ ] XYStage/Acceleration = 1.0000
  798.  
  799. [ ] XYStage/Description [RO] = Ludl XY stage driver adapter
  800.  
  801. [ ] XYStage/Name [RO] = Stage
  802.  
  803. [ ] XYStage/Speed = 20480.0000
  804.  
  805. [ ] XYStage/StartSpeed = 500.0000
  806.  
  807. [ ] XYStage/StepSize = 0.1000
  808.  
  809. [ ] XYStage/StepSize-X = 0.1000
  810.  
  811. [ ] XYStage/StepSize-Y = 0.1000
  812.  
  813. [ ] XYStage/TransposeMirrorX = 0
  814.  
  815. [ ] XYStage/TransposeMirrorY = 0
  816.  
  817. [ ] Core/AutoFocus = TIPFSStatus
  818.  
  819. [ ] Core/AutoShutter = 1
  820.  
  821. [ ] Core/Camera = AndorCamera
  822.  
  823. [ ] Core/ChannelGroup = Imaging Channel
  824.  
  825. [ ] Core/Focus = TIZDrive
  826.  
  827. [ ] Core/Galvo =
  828.  
  829. [ ] Core/ImageProcessor =
  830.  
  831. [ ] Core/Initialize = 1
  832.  
  833. [ ] Core/SLM =
  834.  
  835. [ ] Core/Shutter = TIDiaShutter
  836.  
  837. [ ] Core/TimeoutMs = 5000
  838.  
  839. [ ] Core/XYStage = XYStage
  840.  
  841. 2019-01-28T11:50:32.471548 tid3416 [IFO,App] ***** END Problem Report System Info *****
  842.  
  843. 2019-01-28T11:50:32.518348 tid4804 [IFO,App] User has been prompted to reproduce problem
  844.  
  845. 2019-01-28T11:51:33.790056 tid4804 [dbg,App] [UI] JMenu "Devices" clicked in MainFrame.
  846.  
  847. 2019-01-28T11:51:35.443659 tid4804 [dbg,dev:COM5] SetCommand -> TRXDEL\r
  848.  
  849. 2019-01-28T11:51:35.506059 tid4804 [dbg,dev:COM5] GetAnswer <- :A 0\n
  850.  
  851. 2019-01-28T11:51:35.506059 tid4804 [dbg,dev:COM5] SetCommand -> ACCEL X Y\r
  852.  
  853. 2019-01-28T11:51:35.584059 tid4804 [dbg,dev:COM5] GetAnswer <- :A 1 1 \n
  854.  
  855. 2019-01-28T11:51:35.584059 tid4804 [dbg,dev:COM5] SetCommand -> SPEED X Y\r
  856.  
  857. 2019-01-28T11:51:35.662059 tid4804 [dbg,dev:COM5] GetAnswer <- :A 204800 204800 \n
  858.  
  859. 2019-01-28T11:51:35.662059 tid4804 [dbg,dev:COM5] SetCommand -> STSPEED X Y\r
  860.  
  861. 2019-01-28T11:51:35.771259 tid4804 [dbg,dev:COM5] GetAnswer <- :A 5000 5000 \n
  862.  
  863. 2019-01-28T11:51:37.331262 tid4804 [dbg,App] [UI] JButton "None" clicked in PropertyEditor.
  864.  
  865. 2019-01-28T11:51:38.563664 tid4804 [dbg,App] [UI] JCheckBox "shutters" toggled on in PropertyEditor.
  866.  
  867. 2019-01-28T11:51:55.052893 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  868.  
  869. 2019-01-28T11:52:59.761807 tid4804 [IFO,App] ##### User remark: Right now, the Dia shutter is "closed", I have just launched MM, nothing has happened yet
  870.  
  871. 2019-01-28T11:52:59.761807 tid4804 [dbg,App] [UI] JButton "Insert" clicked in ProblemReportFrame.
  872.  
  873. 2019-01-28T11:53:03.771014 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  874.  
  875. 2019-01-28T11:53:03.927014 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  876.  
  877. 2019-01-28T11:53:04.129815 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  878.  
  879. 2019-01-28T11:53:18.996641 tid4804 [dbg,App] [UI] "ComboBox.list" set to "1" in PropertyEditor.
  880.  
  881. 2019-01-28T11:53:18.996641 tid4804 [IFO,App] Setting value 1 at row 3
  882.  
  883. 2019-01-28T11:53:18.996641 tid4804 [IFO,App] TIDiaShutter/State:1
  884.  
  885. 2019-01-28T11:53:18.996641 tid4804 [dbg,Core:dev:TIDiaShutter] Will set property "State" to "1"
  886.  
  887. 2019-01-28T11:53:19.168241 tid4804 [dbg,Core:dev:TIDiaShutter] Did set property "State" to "1"
  888.  
  889. 2019-01-28T11:53:19.168241 tid4804 [dbg,Core] Waiting for device TIDiaShutter...
  890.  
  891. 2019-01-28T11:53:19.168241 tid5036 [dbg,dev:TIScope] Waiting for all peripherals with a timeout of 1 ms
  892.  
  893. 2019-01-28T11:53:19.168241 tid5036 [dbg,dev:TIScope] 0 peripheral(s) are still busy
  894.  
  895. 2019-01-28T11:53:19.168241 tid4804 [dbg,Core] Finished waiting for device TIDiaShutter
  896.  
  897. 2019-01-28T11:53:19.168241 tid4804 [dbg,Core] Will update system state cache
  898.  
  899. 2019-01-28T11:53:19.168241 tid4804 [dbg,dev:COM5] SetCommand -> TRXDEL\r
  900.  
  901. 2019-01-28T11:53:19.230641 tid4804 [dbg,dev:COM5] GetAnswer <- :A 0\n
  902.  
  903. 2019-01-28T11:53:19.230641 tid4804 [dbg,dev:COM5] SetCommand -> ACCEL X Y\r
  904.  
  905. 2019-01-28T11:53:19.308641 tid4804 [dbg,dev:COM5] GetAnswer <- :A 1 1 \n
  906.  
  907. 2019-01-28T11:53:19.308641 tid4804 [dbg,dev:COM5] SetCommand -> SPEED X Y\r
  908.  
  909. 2019-01-28T11:53:19.402241 tid4804 [dbg,dev:COM5] GetAnswer <- :A 204800 204800 \n
  910.  
  911. 2019-01-28T11:53:19.402241 tid4804 [dbg,dev:COM5] SetCommand -> STSPEED X Y\r
  912.  
  913. 2019-01-28T11:53:19.495842 tid4804 [dbg,dev:COM5] GetAnswer <- :A 5000 5000 \n
  914.  
  915. 2019-01-28T11:53:19.495842 tid4804 [IFO,Core] Did update system state cache
  916.  
  917. 2019-01-28T11:53:19.495842 tid4804 [IFO,App] Updating GUI; config pad = true; from cache = true
  918.  
  919. 2019-01-28T11:53:19.511442 tid4804 [dbg,dev:COM5] SetCommand -> WHERE X Y\r
  920.  
  921. 2019-01-28T11:53:19.589442 tid4804 [dbg,dev:COM5] GetAnswer <- :A -1 11 \n
  922.  
  923. 2019-01-28T11:53:19.589442 tid4804 [IFO,Core] Default autofocus set to TIPFSStatus
  924.  
  925. 2019-01-28T11:53:19.589442 tid4804 [IFO,App] Rebuilding config group table
  926.  
  927. 2019-01-28T11:53:19.589442 tid4804 [IFO,App] Finished rebuilding config group table
  928.  
  929. 2019-01-28T11:53:19.589442 tid4804 [IFO,App] Finished updating GUI
  930.  
  931. 2019-01-28T11:53:23.739049 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  932.  
  933. 2019-01-28T11:53:30.759061 tid4804 [IFO,App] ##### User remark: At this point, the Trans light was turned on, but the TIDiaShutter-State value is still 0
  934.  
  935. 2019-01-28T11:53:30.759061 tid4804 [dbg,App] [UI] JButton "Insert" clicked in ProblemReportFrame.
  936.  
  937. 2019-01-28T11:53:40.041078 tid4804 [dbg,App] [UI] "ComboBox.list" set to "0" in PropertyEditor.
  938.  
  939. 2019-01-28T11:53:40.041078 tid4804 [IFO,App] Setting value 0 at row 3
  940.  
  941. 2019-01-28T11:53:40.041078 tid4804 [IFO,App] TIDiaShutter/State:0
  942.  
  943. 2019-01-28T11:53:40.041078 tid4804 [dbg,Core:dev:TIDiaShutter] Will set property "State" to "0"
  944.  
  945. 2019-01-28T11:53:40.041078 tid4804 [dbg,Core:dev:TIDiaShutter] Did set property "State" to "0"
  946.  
  947. 2019-01-28T11:53:40.041078 tid4804 [dbg,Core] Waiting for device TIDiaShutter...
  948.  
  949. 2019-01-28T11:53:40.041078 tid5036 [dbg,dev:TIScope] Waiting for all peripherals with a timeout of 1 ms
  950.  
  951. 2019-01-28T11:53:40.041078 tid5036 [dbg,dev:TIScope] 0 peripheral(s) are still busy
  952.  
  953. 2019-01-28T11:53:40.041078 tid4804 [dbg,Core] Finished waiting for device TIDiaShutter
  954.  
  955. 2019-01-28T11:53:40.041078 tid4804 [dbg,Core] Will update system state cache
  956.  
  957. 2019-01-28T11:53:40.041078 tid4804 [dbg,dev:COM5] SetCommand -> TRXDEL\r
  958.  
  959. 2019-01-28T11:53:40.119078 tid4804 [dbg,dev:COM5] GetAnswer <- :A 0\n
  960.  
  961. 2019-01-28T11:53:40.119078 tid4804 [dbg,dev:COM5] SetCommand -> ACCEL X Y\r
  962.  
  963. 2019-01-28T11:53:40.197078 tid4804 [dbg,dev:COM5] GetAnswer <- :A 1 1 \n
  964.  
  965. 2019-01-28T11:53:40.197078 tid4804 [dbg,dev:COM5] SetCommand -> SPEED X Y\r
  966.  
  967. 2019-01-28T11:53:40.290678 tid4804 [dbg,dev:COM5] GetAnswer <- :A 204800 204800 \n
  968.  
  969. 2019-01-28T11:53:40.290678 tid4804 [dbg,dev:COM5] SetCommand -> STSPEED X Y\r
  970.  
  971. 2019-01-28T11:53:40.384278 tid4804 [dbg,dev:COM5] GetAnswer <- :A 5000 5000 \n
  972.  
  973. 2019-01-28T11:53:40.384278 tid4804 [IFO,Core] Did update system state cache
  974.  
  975. 2019-01-28T11:53:40.384278 tid4804 [IFO,App] Updating GUI; config pad = true; from cache = true
  976.  
  977. 2019-01-28T11:53:40.399878 tid4804 [dbg,dev:COM5] SetCommand -> WHERE X Y\r
  978.  
  979. 2019-01-28T11:53:40.493479 tid4804 [dbg,dev:COM5] GetAnswer <- :A -1 11 \n
  980.  
  981. 2019-01-28T11:53:40.493479 tid4804 [IFO,Core] Default autofocus set to TIPFSStatus
  982.  
  983. 2019-01-28T11:53:40.493479 tid4804 [IFO,App] Rebuilding config group table
  984.  
  985. 2019-01-28T11:53:40.493479 tid4804 [IFO,App] Finished rebuilding config group table
  986.  
  987. 2019-01-28T11:53:40.493479 tid4804 [IFO,App] Finished updating GUI
  988.  
  989. 2019-01-28T11:53:58.121510 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  990.  
  991. 2019-01-28T11:53:58.261910 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  992.  
  993. 2019-01-28T11:53:58.402310 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  994.  
  995. 2019-01-28T11:54:01.350715 tid4804 [IFO,App] ##### User remark: The light is still on, and the value is still 0
  996.  
  997. 2019-01-28T11:54:01.350715 tid4804 [dbg,App] [UI] JButton "Insert" clicked in ProblemReportFrame.
  998.  
  999. 2019-01-28T11:54:27.901962 tid4804 [dbg,App] [UI] "ComboBox.list" set to "GFP" in MainFrame.
  1000.  
  1001. 2019-01-28T11:54:27.901962 tid4804 [dbg,Core] Config group Imaging Channel: will apply preset GFP
  1002.  
  1003. 2019-01-28T11:54:27.901962 tid4804 [dbg,Core:dev:TIFilterBlock1] Will set property "Label" to "3-GFPHQ"
  1004.  
  1005. 2019-01-28T11:54:27.901962 tid4804 [dbg,dev:TIFilterBlock1] Will ignore next position change callback if it reports the target position
  1006.  
  1007. 2019-01-28T11:54:27.901962 tid4804 [dbg,Core:dev:TIFilterBlock1] Did set property "Label" to "3-GFPHQ"
  1008.  
  1009. 2019-01-28T11:54:27.901962 tid5036 [dbg,dev:TIScope] [TiCOMFilterBlockCassette(1)] Invoking notification callback for position (3)
  1010.  
  1011. 2019-01-28T11:54:27.901962 tid5036 [dbg,dev:TIFilterBlock1] Ignoring position change callback (expected to be spurious)
  1012.  
  1013. 2019-01-28T11:54:27.901962 tid4804 [IFO,Core] Default shutter set to TIEpiShutter
  1014.  
  1015. 2019-01-28T11:54:27.901962 tid4804 [dbg,App] Notification for Device: Core Property: Shutter changed to value: TIEpiShutter
  1016.  
  1017. 2019-01-28T11:54:27.901962 tid4804 [dbg,Core] Config group Imaging Channel: did apply preset GFP
  1018.  
  1019. 2019-01-28T11:54:27.901962 tid4804 [dbg,Core] Waiting for device TIFilterBlock1...
  1020.  
  1021. 2019-01-28T11:54:28.276362 tid5036 [dbg,App] Notification for Device: TIFilterBlock1 Property: State changed to value: 2
  1022.  
  1023. 2019-01-28T11:54:28.276362 tid5036 [dbg,App] Notification for Device: TIFilterBlock1 Property: Label changed to value: 3-GFPHQ
  1024.  
  1025. 2019-01-28T11:54:28.276362 tid5036 [dbg,dev:TIFilterBlock1] Considering move to have completed, based on scope busy status
  1026.  
  1027. 2019-01-28T11:54:28.385563 tid5036 [dbg,dev:TIScope] Message loop has backlog, so we are busy (pre-check)
  1028.  
  1029. 2019-01-28T11:54:28.432363 tid5036 [dbg,dev:TIScope] [TiCOMFilterBlockCassette(1)] Invoking notification callback for position (3)
  1030.  
  1031. 2019-01-28T11:54:28.432363 tid5036 [dbg,App] Notification for Device: TIFilterBlock1 Property: State changed to value: 2
  1032.  
  1033. 2019-01-28T11:54:28.432363 tid5036 [dbg,App] Notification for Device: TIFilterBlock1 Property: Label changed to value: 3-GFPHQ
  1034.  
  1035. 2019-01-28T11:54:28.432363 tid5036 [dbg,dev:TIScope] Message loop has backlog, so we are busy (pre-check)
  1036.  
  1037. 2019-01-28T11:54:28.432363 tid5036 [dbg,dev:TIScope] [TiCOMFilterBlockCassette(1)] Invoking notification callback for position (3)
  1038.  
  1039. 2019-01-28T11:54:28.432363 tid5036 [dbg,App] Notification for Device: TIFilterBlock1 Property: State changed to value: 2
  1040.  
  1041. 2019-01-28T11:54:28.432363 tid5036 [dbg,App] Notification for Device: TIFilterBlock1 Property: Label changed to value: 3-GFPHQ
  1042.  
  1043. 2019-01-28T11:54:28.541563 tid4804 [dbg,Core] Finished waiting for device TIFilterBlock1
  1044.  
  1045. 2019-01-28T11:54:28.541563 tid4804 [dbg,Core] Will set camera AndorCamera exposure to 10.000 ms
  1046.  
  1047. 2019-01-28T11:54:28.541563 tid4804 [dbg,Core] Did set camera AndorCamera exposure to 10.000 ms
  1048.  
  1049. 2019-01-28T11:54:28.541563 tid4804 [IFO,App] Refreshing config group table
  1050.  
  1051. 2019-01-28T11:54:28.541563 tid4804 [IFO,App] Finished refreshing config group table
  1052.  
  1053. 2019-01-28T11:54:28.541563 tid4804 [IFO,App] Updating GUI; config pad = false; from cache = false
  1054.  
  1055. 2019-01-28T11:54:28.557163 tid4804 [dbg,dev:COM5] SetCommand -> WHERE X Y\r
  1056.  
  1057. 2019-01-28T11:54:28.650763 tid4804 [dbg,dev:COM5] GetAnswer <- :A 0 14 \n
  1058.  
  1059. 2019-01-28T11:54:28.650763 tid4804 [IFO,Core] Default autofocus set to TIPFSStatus
  1060.  
  1061. 2019-01-28T11:54:28.650763 tid4804 [IFO,App] Finished updating GUI
  1062.  
  1063. 2019-01-28T11:54:38.743981 tid4804 [dbg,App] [UI] "ComboBox.list" set to "1" in PropertyEditor.
  1064.  
  1065. 2019-01-28T11:54:38.743981 tid4804 [IFO,App] Setting value 1 at row 1
  1066.  
  1067. 2019-01-28T11:54:38.743981 tid4804 [IFO,App] TIEpiShutter/State:1
  1068.  
  1069. 2019-01-28T11:54:38.743981 tid4804 [dbg,Core:dev:TIEpiShutter] Will set property "State" to "1"
  1070.  
  1071. 2019-01-28T11:54:38.915581 tid4804 [dbg,Core:dev:TIEpiShutter] Did set property "State" to "1"
  1072.  
  1073. 2019-01-28T11:54:38.915581 tid4804 [dbg,Core] Waiting for device TIEpiShutter...
  1074.  
  1075. 2019-01-28T11:54:38.915581 tid5036 [dbg,dev:TIScope] Waiting for all peripherals with a timeout of 1 ms
  1076.  
  1077. 2019-01-28T11:54:38.915581 tid5036 [dbg,dev:TIScope] 0 peripheral(s) are still busy
  1078.  
  1079. 2019-01-28T11:54:38.915581 tid4804 [dbg,Core] Finished waiting for device TIEpiShutter
  1080.  
  1081. 2019-01-28T11:54:38.915581 tid4804 [dbg,Core] Will update system state cache
  1082.  
  1083. 2019-01-28T11:54:38.915581 tid4804 [dbg,dev:COM5] SetCommand -> TRXDEL\r
  1084.  
  1085. 2019-01-28T11:54:38.977981 tid4804 [dbg,dev:COM5] GetAnswer <- :A 0\n
  1086.  
  1087. 2019-01-28T11:54:38.977981 tid4804 [dbg,dev:COM5] SetCommand -> ACCEL X Y\r
  1088.  
  1089. 2019-01-28T11:54:39.055981 tid4804 [dbg,dev:COM5] GetAnswer <- :A 1 1 \n
  1090.  
  1091. 2019-01-28T11:54:39.055981 tid4804 [dbg,dev:COM5] SetCommand -> SPEED X Y\r
  1092.  
  1093. 2019-01-28T11:54:39.149582 tid4804 [dbg,dev:COM5] GetAnswer <- :A 204800 204800 \n
  1094.  
  1095. 2019-01-28T11:54:39.149582 tid4804 [dbg,dev:COM5] SetCommand -> STSPEED X Y\r
  1096.  
  1097. 2019-01-28T11:54:39.243182 tid4804 [dbg,dev:COM5] GetAnswer <- :A 5000 5000 \n
  1098.  
  1099. 2019-01-28T11:54:39.243182 tid4804 [IFO,Core] Did update system state cache
  1100.  
  1101. 2019-01-28T11:54:39.243182 tid4804 [IFO,App] Updating GUI; config pad = true; from cache = true
  1102.  
  1103. 2019-01-28T11:54:39.258782 tid4804 [dbg,dev:COM5] SetCommand -> WHERE X Y\r
  1104.  
  1105. 2019-01-28T11:54:39.352382 tid4804 [dbg,dev:COM5] GetAnswer <- :A 1 13 \n
  1106.  
  1107. 2019-01-28T11:54:39.352382 tid4804 [IFO,Core] Default autofocus set to TIPFSStatus
  1108.  
  1109. 2019-01-28T11:54:39.352382 tid4804 [IFO,App] Rebuilding config group table
  1110.  
  1111. 2019-01-28T11:54:39.352382 tid4804 [IFO,App] Finished rebuilding config group table
  1112.  
  1113. 2019-01-28T11:54:39.352382 tid4804 [IFO,App] Finished updating GUI
  1114.  
  1115. 2019-01-28T11:54:44.718791 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  1116.  
  1117. 2019-01-28T11:54:44.843592 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  1118.  
  1119. 2019-01-28T11:54:44.999592 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  1120.  
  1121. 2019-01-28T11:54:55.155610 tid4804 [dbg,App] [UI] JTextField clicked in ProblemReportFrame.
  1122.  
  1123. 2019-01-28T11:55:46.167700 tid4804 [IFO,App] ##### User remark: The DIA shutter is still on, and the EPI shutter does not open, no matter what I do and in what order. The value displayed in the device property browser is always 0.
  1124.  
  1125. 2019-01-28T11:55:46.167700 tid4804 [dbg,App] [UI] JButton "Insert" clicked in ProblemReportFrame.
  1126.  
  1127. 2019-01-28T11:55:55.995717 tid4804 [IFO,App] User has stopped log capture
  1128.  
  1129. 2019-01-28T11:55:55.995717 tid2352 [IFO,App] ***** BEGIN Problem Report System Info (incremental) *****
  1130.  
  1131. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] Total physical memory (caveats apply if JVM is 32-bit): 34279854080 (31.9 GiB)
  1132.  
  1133. [ ] Committed virtual memory size: 1050546176 (1001.9 MiB)
  1134.  
  1135. [ ] Free physical memory (may be meaningless if JVM is 32-bit): 30445109248 (28.4 GiB)
  1136.  
  1137. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] JVM heap memory usage: used = 35203568 (33.6 MiB); committed = 394788864 (376.5 MiB); max = 1864368128 (1.7 GiB)
  1138.  
  1139. [ ] JVM non-heap memory usage: used = 67382128 (64.3 MiB); committed = 69140480 (65.9 MiB); max = unavailable
  1140.  
  1141. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] All Java threads:
  1142.  
  1143. [ ] id 2 ("Reference Handler"): WAITING
  1144.  
  1145. [ ] id 3 ("Finalizer"): WAITING
  1146.  
  1147. [ ] id 4 ("Signal Dispatcher"): RUNNABLE
  1148.  
  1149. [ ] id 5 ("Attach Listener"): RUNNABLE
  1150.  
  1151. [ ] id 12 ("RMI TCP Accept-0"): RUNNABLE
  1152.  
  1153. [ ] id 13 ("RMI Reaper"): WAITING
  1154.  
  1155. [ ] id 14 ("GC Daemon"): TIMED_WAITING
  1156.  
  1157. [ ] id 15 ("Java2D Disposer"): WAITING
  1158.  
  1159. [ ] id 16 ("AWT-Shutdown"): WAITING
  1160.  
  1161. [ ] id 17 ("AWT-Windows"): RUNNABLE
  1162.  
  1163. [ ] id 19 ("AWT-EventQueue-0"): RUNNABLE
  1164.  
  1165. [ ] id 22 ("D3D Screen Updater"): TIMED_WAITING
  1166.  
  1167. [ ] id 23 ("DestroyJavaVM"): RUNNABLE
  1168.  
  1169. [ ] id 26 ("User Profile Saver Pool Thread 0"): WAITING
  1170.  
  1171. [ ] id 27 ("TimerQueue"): TIMED_WAITING
  1172.  
  1173. [ ] id 30 ("EDTHangLogger timer"): TIMED_WAITING
  1174.  
  1175. [ ] id 31 ("Thread-6"): TIMED_WAITING
  1176.  
  1177. [ ] id 33 ("BeanShell interpreter"): TIMED_WAITING
  1178.  
  1179. [ ] id 74 ("SwingWorker-pool-2-thread-1"): WAITING
  1180.  
  1181. [ ] id 323 ("SwingWorker-pool-2-thread-2"): RUNNABLE
  1182.  
  1183. [ ] (End all Java threads)
  1184.  
  1185. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] Deadlocked Java threads: none detected
  1186.  
  1187. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] MMCore version: MMCore version 8.7.1
  1188.  
  1189. [ ] Circular buffer size (MB): 250
  1190.  
  1191. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] Core property cache ("system state cache") contents:
  1192.  
  1193. [ ] COM5/AnswerTimeout = 500.0000
  1194.  
  1195. [ ] COM5/BaudRate = 9600
  1196.  
  1197. [ ] COM5/DataBits = 8
  1198.  
  1199. [ ] COM5/DelayBetweenCharsMs = 0.0000
  1200.  
  1201. [ ] COM5/Description [RO] = Serial port driver (boost:asio)
  1202.  
  1203. [ ] COM5/Fast USB to Serial = Disable
  1204.  
  1205. [ ] COM5/Handshaking = Off
  1206.  
  1207. [ ] COM5/Name [RO] = COM5
  1208.  
  1209. [ ] COM5/Parity = None
  1210.  
  1211. [ ] COM5/StopBits = 2
  1212.  
  1213. [ ] COM5/Verbose = 1
  1214.  
  1215. [ ] COM4/AnswerTimeout = 500.0000
  1216.  
  1217. [ ] COM4/BaudRate = 9600
  1218.  
  1219. [ ] COM4/DataBits = 8
  1220.  
  1221. [ ] COM4/DelayBetweenCharsMs = 0.0000
  1222.  
  1223. [ ] COM4/Description [RO] = Serial port driver (boost:asio)
  1224.  
  1225. [ ] COM4/Fast USB to Serial = Disable
  1226.  
  1227. [ ] COM4/Handshaking = Off
  1228.  
  1229. [ ] COM4/Name [RO] = COM4
  1230.  
  1231. [ ] COM4/Parity = None
  1232.  
  1233. [ ] COM4/StopBits = 1
  1234.  
  1235. [ ] COM4/Verbose = 1
  1236.  
  1237. [ ] AndorCamera/1. Camera Information : | Type | Model | Serial No. | [RO] = | Clara | DR328_C02~G | 2187 |
  1238.  
  1239. [ ] AndorCamera/AD_Converter = 2. 14bit
  1240.  
  1241. [ ] AndorCamera/ActualInterval-ms [RO] = 91.75
  1242.  
  1243. [ ] AndorCamera/Advanced | Snap Image Additional Delay (ms) = 0
  1244.  
  1245. [ ] AndorCamera/Advanced | Snap Image Timing Mode = Delay for Exposure
  1246.  
  1247. [ ] AndorCamera/Binning = 2
  1248.  
  1249. [ ] AndorCamera/CCDTemperature [RO] = -15
  1250.  
  1251. [ ] AndorCamera/CCDTemperature Help [RO] = Wait for temperature to stabilize before acquisition.
  1252.  
  1253. [ ] AndorCamera/CCDTemperature continuous update = On
  1254.  
  1255. [ ] AndorCamera/CCDTemperatureSetPoint = -20
  1256.  
  1257. [ ] AndorCamera/Camera = | Clara | DR328_C02~G | 2187 |
  1258.  
  1259. [ ] AndorCamera/CoolerMode = Fan off at shutdown
  1260.  
  1261. [ ] AndorCamera/Description [RO] = Andor camera adapter
  1262.  
  1263. [ ] AndorCamera/Exposure = 10.0000
  1264.  
  1265. [ ] AndorCamera/FanMode = Full
  1266.  
  1267. [ ] AndorCamera/Isolated Crop Mode = Off
  1268.  
  1269. [ ] AndorCamera/KeepCleanTime [RO] = 6.8512
  1270.  
  1271. [ ] AndorCamera/Output_Amplifier = Normal
  1272.  
  1273. [ ] AndorCamera/Overlap = On
  1274.  
  1275. [ ] AndorCamera/Overlap Help [RO] = Should only turn on Overlap if using Burst or Live mode.
  1276.  
  1277. [ ] AndorCamera/PixelType = 16bit
  1278.  
  1279. [ ] AndorCamera/Pre-Amp-Gain = 1.5x
  1280.  
  1281. [ ] AndorCamera/ReadMode = Image
  1282.  
  1283. [ ] AndorCamera/ReadoutMode = 10.000 MHz
  1284.  
  1285. [ ] AndorCamera/ReadoutTime [RO] = 84.9008
  1286.  
  1287. [ ] AndorCamera/Region of Interest = Full Image
  1288.  
  1289. [ ] AndorCamera/Shutter = Open
  1290.  
  1291. [ ] AndorCamera/Shutter Closing Time = 20
  1292.  
  1293. [ ] AndorCamera/Shutter Opening Time = 20
  1294.  
  1295. [ ] AndorCamera/Shutter TTL Value = High to Open
  1296.  
  1297. [ ] AndorCamera/SpuriousNoiseFilter = None
  1298.  
  1299. [ ] AndorCamera/SpuriousNoiseFilterDescription [RO] = Spurious Noise Filter is Off
  1300.  
  1301. [ ] AndorCamera/SpuriousNoiseFilterThreshold = 0.0000
  1302.  
  1303. [ ] AndorCamera/TimeOut = 10000
  1304.  
  1305. [ ] AndorCamera/TransposeCorrection = 0
  1306.  
  1307. [ ] AndorCamera/TransposeMirrorX = 0
  1308.  
  1309. [ ] AndorCamera/TransposeMirrorY = 0
  1310.  
  1311. [ ] AndorCamera/TransposeXY = 0
  1312.  
  1313. [ ] AndorCamera/Trigger = Internal
  1314.  
  1315. [ ] AndorCamera/VerticalSpeed (microseconds) [RO] =
  1316.  
  1317. [ ] TIScope/DeviceAddress [RO] = USB_DEVICE(1)
  1318.  
  1319. [ ] TIScope/DeviceIndex [RO] = 1
  1320.  
  1321. [ ] TIScope/DriverVersion [RO] = micusb.sys 3.0.1.9
  1322.  
  1323. [ ] TIScope/FirmwareVersion [RO] = Ti-E V4.00
  1324.  
  1325. [ ] TIScope/SoftwareVersion [RO] = 4.4.1.728
  1326.  
  1327. [ ] TIEpiShutter/Name = TIEpiShutter
  1328.  
  1329. [ ] TIEpiShutter/State = 0
  1330.  
  1331. [ ] TIDiaShutter/Name = TIDiaShutter
  1332.  
  1333. [ ] TIDiaShutter/State = 0
  1334.  
  1335. [ ] TINosePiece/ExtraDelayMs = 0.0000
  1336.  
  1337. [ ] TINosePiece/Label = 1-Plan Apo 100x NA 1.40 Oil
  1338.  
  1339. [ ] TINosePiece/Name [RO] = TINosePiece
  1340.  
  1341. [ ] TINosePiece/State = 0
  1342.  
  1343. [ ] TIFilterBlock1/ExtraDelayMs = 250.0000
  1344.  
  1345. [ ] TIFilterBlock1/Label = 3-GFPHQ
  1346.  
  1347. [ ] TIFilterBlock1/Name [RO] = TIFilterBlock1
  1348.  
  1349. [ ] TIFilterBlock1/State = 2
  1350.  
  1351. [ ] TILightPath/ExtraDelayMs = 0.0000
  1352.  
  1353. [ ] TILightPath/Label = 1-Eye100
  1354.  
  1355. [ ] TILightPath/Name [RO] = TILightPath
  1356.  
  1357. [ ] TILightPath/State = 0
  1358.  
  1359. [ ] TIZDrive/Name [RO] = TIZDrive
  1360.  
  1361. [ ] TIZDrive/Speed = 1
  1362.  
  1363. [ ] TIZDrive/Tolerance = 0
  1364.  
  1365. [ ] TIPFSOffset/Name [RO] = TIPFSOffset
  1366.  
  1367. [ ] TIPFSOffset/Position = 57.2500
  1368.  
  1369. [ ] TIPFSStatus/FullFocusTimeoutMs = 5000.0000
  1370.  
  1371. [ ] TIPFSStatus/FullFocusWaitAfterLockMs = 0.0000
  1372.  
  1373. [ ] TIPFSStatus/Name [RO] = TIPFSStatus
  1374.  
  1375. [ ] TIPFSStatus/State = Off
  1376.  
  1377. [ ] TIPFSStatus/Status [RO] = Out of focus search range
  1378.  
  1379. [ ] LumencorSola/Description = Lumencor Spectra Light Engine
  1380.  
  1381. [ ] LumencorSola/Name = Spectra
  1382.  
  1383. [ ] LumencorSola/Port = COM4
  1384.  
  1385. [ ] LumencorSola/SetLE_Type = Sola
  1386.  
  1387. [ ] LumencorSola/State = 0
  1388.  
  1389. [ ] LumencorSola/White_Enable = 0
  1390.  
  1391. [ ] LumencorSola/White_Level = 100
  1392.  
  1393. [ ] LudlController/Description [RO] = Ludl Controller (Mac 2000/5000)
  1394.  
  1395. [ ] LudlController/Name [RO] = LudlController
  1396.  
  1397. [ ] LudlController/Port = COM5
  1398.  
  1399. [ ] LudlController/Reset = Operate
  1400.  
  1401. [ ] LudlController/TransmissionDelay = 0
  1402.  
  1403. [ ] LudlController/Version [RO] = Version no. : 12.200 MAC6000 Interface with USB/ETH
  1404.  
  1405. [ ] XYStage/Acceleration = 1.0000
  1406.  
  1407. [ ] XYStage/Description [RO] = Ludl XY stage driver adapter
  1408.  
  1409. [ ] XYStage/Name [RO] = Stage
  1410.  
  1411. [ ] XYStage/Speed = 20480.0000
  1412.  
  1413. [ ] XYStage/StartSpeed = 500.0000
  1414.  
  1415. [ ] XYStage/StepSize = 0.1000
  1416.  
  1417. [ ] XYStage/StepSize-X = 0.1000
  1418.  
  1419. [ ] XYStage/StepSize-Y = 0.1000
  1420.  
  1421. [ ] XYStage/TransposeMirrorX = 0
  1422.  
  1423. [ ] XYStage/TransposeMirrorY = 0
  1424.  
  1425. [ ] Core/AutoFocus = TIPFSStatus
  1426.  
  1427. [ ] Core/AutoShutter = 1
  1428.  
  1429. [ ] Core/Camera = AndorCamera
  1430.  
  1431. [ ] Core/ChannelGroup = Imaging Channel
  1432.  
  1433. [ ] Core/Focus = TIZDrive
  1434.  
  1435. [ ] Core/Galvo =
  1436.  
  1437. [ ] Core/ImageProcessor =
  1438.  
  1439. [ ] Core/Initialize = 1
  1440.  
  1441. [ ] Core/SLM =
  1442.  
  1443. [ ] Core/Shutter = TIEpiShutter
  1444.  
  1445. [ ] Core/TimeoutMs = 5000
  1446.  
  1447. [ ] Core/XYStage = XYStage
  1448.  
  1449. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] ***** END Problem Report System Info (incremental) *****
  1450.  
  1451. 2019-01-28T11:55:56.011317 tid2352 [IFO,App] Problem Report: End of log capture
  1452.  
  1453. 2019-01-28T11:55:56.011317 tid2352 [IFO,LogManager] Removing secondary log file C:\Users\DunlopLab\MMProblemReport\CoreLogCapture.txt
  1454.  
  1455. ***** END Captured Log *****
  1456. ***** END OF PROBLEM REPORT *****
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