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- Jun-19 16:03:13.939 [Actor Thread 4] WARN nextflow.processor.TaskContext - Cannot serialize context map. Cause: java.lang.IllegalArgumentException: type cannot be null. -- Resume will not work on this process
- Jun-19 16:03:13.942 [Actor Thread 4] DEBUG nextflow.processor.TaskContext - Failed to serialize delegate map items: [
- 'x':[null] = [firstName:Jane, lastName:Doe]
- '$':[java.lang.Boolean] = true
- 'task':[nextflow.processor.TaskConfig] = [process:foo, index:2, echo:false, validExitStatus:[0], maxRetries:1, maxErrors:3, shell:[/bin/bash, -ue], executor:local, name:foo (2), cacheable:true, errorStrategy:TERMINATE, workDir:/Volumes/LG_01_WD3TB/tmp/preqctest/work/85/8e1bdbe341d5644034fd3e24426884, hash:858e1bdbe341d5644034fd3e24426884]
- 'paramsFilePath':[java.io.File] = /Volumes/LG_01_WD3TB/tmp/preqctest/work/85/8e1bdbe341d5644034fd3e24426884/params.yaml
- 'yaml':[org.yaml.snakeyaml.Yaml] = Yaml:94182769
- ]
- com.esotericsoftware.kryo.KryoException: java.lang.IllegalArgumentException: type cannot be null.
- Serialization trace:
- multiRepresenters (org.yaml.snakeyaml.representer.Representer)
- representer (org.yaml.snakeyaml.Yaml)
- at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:82)
- at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:495)
- at com.esotericsoftware.kryo.Kryo.writeObject(Kryo.java:523)
- at com.esotericsoftware.kryo.serializers.ObjectField.write(ObjectField.java:61)
- at com.esotericsoftware.kryo.serializers.FieldSerializer.write(FieldSerializer.java:495)
- at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:599)
- at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:95)
- at com.esotericsoftware.kryo.serializers.MapSerializer.write(MapSerializer.java:21)
- at com.esotericsoftware.kryo.Kryo.writeClassAndObject(Kryo.java:599)
- at com.esotericsoftware.kryo.Kryo$writeClassAndObject$1.call(Unknown Source)
- at nextflow.util.KryoHelper.serialize(SerializationHelper.groovy:166)
- at nextflow.util.KryoHelper$serialize.call(Unknown Source)
- at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:48)
- at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:113)
- at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:125)
- at nextflow.processor.TaskContext.serialize(TaskContext.groovy:181)
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