#!/bin/bash
#SBATCH -o job-%A_task.out
#SBATCH --job-name=paral_cor
#SBATCH --partition=normal
#SBATCH --time=1-00:00:00
#SBATCH --mem=200G
#SBATCH --cpus-per-task=16
#SBATCH --array=1-10

#Set up whatever package we need to run with

module load gcc/8.1.0 openblas/0.3.3 R

# SET UP DIRECTORIES

OUTPUT="$HOME"/PROJET_M2/data/$(date +"%Y%m%d")_parallel_nodes_test
mkdir -p "$OUTPUT"

export FILENAME="$HOME"/vipailler/PROJET_M2/bin/RHO_COR.R

subset=$((SLURM_ARRAY_TASK_ID))
file="$HOME"/PROJET_M2/raw/truelength2.prok2.uniref2.rares.tsv

#Run the program

echo "Start job :"`date` >> "$OUTPUT"/"$SLURM_ARRAY_TASK_ID".txt
echo "Start job :"`date`

echo PWD $PWD

Rscript $FILENAME --file $file --subset $subset   > "$OUTPUT"/"$SLURM_ARRAY_TASK_ID"

wait


echo "Stop job : "`date` >> "$OUTPUT"/"$SLURM_ARRAY_TASK_ID".txt
echo "Stop job : "`date`