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- allsnps: YES
- ## qpAdm version: 1000
- seed: 1878777527
- read 1073741824 bytes
- read 2147483648 bytes
- read 2179966984 bytes
- packed geno read OK
- end of inpack
- left pops:
- Alalakh_MLBA_outlier
- Uzbekistan_BA_Dzharkutan1
- Kazakhstan_LBA_Zevakinskiy
- right pops:
- Cameroon_SMA.DG
- EEHG
- WSHG
- PPN
- WEHG
- Anatolia_N
- Iran_GanjDareh_N
- Russia_UstBelaya_Angara
- ONG.SG
- Botai
- CHG
- 0 Alalakh_MLBA_outlier 1
- 1 Uzbekistan_BA_Dzharkutan1 7
- 2 Kazakhstan_LBA_Zevakinskiy 5
- 3 Cameroon_SMA.DG 1
- 4 EEHG 5
- 5 WSHG 3
- 6 PPN 11
- 7 WEHG 33
- 8 Anatolia_N 22
- 9 Iran_GanjDareh_N 8
- 10 Russia_UstBelaya_Angara 8
- 11 ONG.SG 6
- 12 Botai 2
- 13 CHG 2
- jackknife block size: 0.050
- snps: 1150509 indivs: 114
- number of blocks for block jackknife: 713
- ## ncols: 1150509
- coverage: Alalakh_MLBA_outlier 733730
- coverage: Uzbekistan_BA_Dzharkutan1 1054006
- coverage: Kazakhstan_LBA_Zevakinskiy 1006597
- coverage: Cameroon_SMA.DG 1140138
- coverage: EEHG 1052093
- coverage: WSHG 858019
- coverage: PPN 847771
- coverage: WEHG 1140599
- coverage: Anatolia_N 1139031
- coverage: Iran_GanjDareh_N 1057358
- coverage: Russia_UstBelaya_Angara 1072574
- coverage: ONG.SG 1143397
- coverage: Botai 926654
- coverage: CHG 1149558
- dof (jackknife): 621.581
- numsnps used: 1150509
- codimension 1
- f4info:
- f4rank: 1 dof: 9 chisq: 5.527 tail: 0.786148228 dofdiff: 11 chisqdiff: -5.527 taildiff: 1
- B:
- scale 1.000
- EEHG 1.366
- WSHG 1.477
- PPN 0.018
- WEHG 1.230
- Anatolia_N 0.221
- Iran_GanjDareh_N -0.888
- Russia_UstBelaya_Angara 1.204
- ONG.SG 0.423
- Botai 1.363
- CHG -0.334
- A:
- scale 463.543
- Uzbekistan_BA_Dzharkutan1 -0.188
- Kazakhstan_LBA_Zevakinskiy 1.402
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 5.527 taildiff: 0.786148228
- B:
- scale 2111.861 331.766
- EEHG -0.611 1.455
- WSHG -1.512 1.458
- PPN -0.138 0.015
- WEHG -1.123 1.233
- Anatolia_N -0.132 0.239
- Iran_GanjDareh_N 0.550 -0.905
- Russia_UstBelaya_Angara -1.718 1.126
- ONG.SG -0.796 0.382
- Botai -1.461 1.342
- CHG -0.140 -0.380
- A:
- scale 1.414 1.414
- Uzbekistan_BA_Dzharkutan1 1.414 0.000
- Kazakhstan_LBA_Zevakinskiy 0.000 1.414
- best coefficients: 0.882 0.118
- Jackknife mean: 0.881705843 0.118294157
- std. errors: 0.030 0.030
- error covariance (* 1,000,000)
- 873 -873
- -873 873
- summ: Alalakh_MLBA_outlier 2 0.786148 0.882 0.118 873 -873 873
- fixed pat wt dof chisq tail prob
- 00 0 9 5.527 0.786148 0.882 0.118
- 01 1 10 20.856 0.0221217 1.000 0.000
- 10 1 10 682.923 0 0.000 1.000
- best pat: 00 0.786148 - -
- best pat: 01 0.0221217 chi(nested): 15.329 p-value for nested model: 9.03363e-05
- coeffs: 0.882 0.118
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Uzbekistan_BA_Dzharkutan1 EEHG -0.000289 -0.875941
- details: Kazakhstan_LBA_Zevakinskiy EEHG 0.004385 12.603316
- dscore: EEHG f4: 0.000263 Z: 0.811165
- details: Uzbekistan_BA_Dzharkutan1 WSHG -0.000716 -2.046627
- details: Kazakhstan_LBA_Zevakinskiy WSHG 0.004396 11.596519
- dscore: WSHG f4: -0.000112 Z: -0.325045
- details: Uzbekistan_BA_Dzharkutan1 PPN -0.000065 -0.206622
- details: Kazakhstan_LBA_Zevakinskiy PPN 0.000044 0.135116
- dscore: PPN f4: -0.000052 Z: -0.168804
- details: Uzbekistan_BA_Dzharkutan1 WEHG -0.000532 -1.714087
- details: Kazakhstan_LBA_Zevakinskiy WEHG 0.003716 11.485198
- dscore: WEHG f4: -0.000030 Z: -0.096901
- details: Uzbekistan_BA_Dzharkutan1 Anatolia_N -0.000063 -0.222121
- details: Kazakhstan_LBA_Zevakinskiy Anatolia_N 0.000720 2.443207
- dscore: Anatolia_N f4: 0.000030 Z: 0.108491
- details: Uzbekistan_BA_Dzharkutan1 Iran_GanjDareh_N 0.000261 0.893872
- details: Kazakhstan_LBA_Zevakinskiy Iran_GanjDareh_N -0.002727 -8.999452
- dscore: Iran_GanjDareh_N f4: -0.000093 Z: -0.323363
- details: Uzbekistan_BA_Dzharkutan1 Russia_UstBelaya_Angara -0.000814 -2.707689
- details: Kazakhstan_LBA_Zevakinskiy Russia_UstBelaya_Angara 0.003394 10.455123
- dscore: Russia_UstBelaya_Angara f4: -0.000316 Z: -1.070337
- details: Uzbekistan_BA_Dzharkutan1 ONG.SG -0.000377 -1.212019
- details: Kazakhstan_LBA_Zevakinskiy ONG.SG 0.001151 3.455861
- dscore: ONG.SG f4: -0.000196 Z: -0.640329
- details: Uzbekistan_BA_Dzharkutan1 Botai -0.000692 -1.927900
- details: Kazakhstan_LBA_Zevakinskiy Botai 0.004046 10.432455
- dscore: Botai f4: -0.000132 Z: -0.373967
- details: Uzbekistan_BA_Dzharkutan1 CHG -0.000066 -0.200616
- details: Kazakhstan_LBA_Zevakinskiy CHG -0.001146 -3.423932
- dscore: CHG f4: -0.000194 Z: -0.599700
- gendstat: Cameroon_SMA.DG EEHG 0.811
- gendstat: Cameroon_SMA.DG WSHG -0.325
- gendstat: Cameroon_SMA.DG PPN -0.169
- gendstat: Cameroon_SMA.DG WEHG -0.097
- gendstat: Cameroon_SMA.DG Anatolia_N 0.108
- gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -0.323
- gendstat: Cameroon_SMA.DG Russia_UstBelaya_Angara -1.070
- gendstat: Cameroon_SMA.DG ONG.SG -0.640
- gendstat: Cameroon_SMA.DG Botai -0.374
- gendstat: Cameroon_SMA.DG CHG -0.600
- gendstat: EEHG WSHG -1.336
- gendstat: EEHG PPN -0.964
- gendstat: EEHG WEHG -1.218
- gendstat: EEHG Anatolia_N -0.879
- gendstat: EEHG Iran_GanjDareh_N -1.156
- gendstat: EEHG Russia_UstBelaya_Angara -2.025
- gendstat: EEHG ONG.SG -1.446
- gendstat: EEHG Botai -1.438
- gendstat: EEHG CHG -1.418
- gendstat: WSHG PPN 0.168
- gendstat: WSHG WEHG 0.286
- gendstat: WSHG Anatolia_N 0.479
- gendstat: WSHG Iran_GanjDareh_N 0.058
- gendstat: WSHG Russia_UstBelaya_Angara -0.688
- gendstat: WSHG ONG.SG -0.254
- gendstat: WSHG Botai -0.072
- gendstat: WSHG CHG -0.234
- gendstat: PPN WEHG 0.084
- gendstat: PPN Anatolia_N 0.382
- gendstat: PPN Iran_GanjDareh_N -0.135
- gendstat: PPN Russia_UstBelaya_Angara -0.846
- gendstat: PPN ONG.SG -0.444
- gendstat: PPN Botai -0.213
- gendstat: PPN CHG -0.455
- gendstat: WEHG Anatolia_N 0.290
- gendstat: WEHG Iran_GanjDareh_N -0.233
- gendstat: WEHG Russia_UstBelaya_Angara -1.083
- gendstat: WEHG ONG.SG -0.572
- gendstat: WEHG Botai -0.345
- gendstat: WEHG CHG -0.575
- gendstat: Anatolia_N Iran_GanjDareh_N -0.512
- gendstat: Anatolia_N Russia_UstBelaya_Angara -1.328
- gendstat: Anatolia_N ONG.SG -0.807
- gendstat: Anatolia_N Botai -0.520
- gendstat: Anatolia_N CHG -0.851
- gendstat: Iran_GanjDareh_N Russia_UstBelaya_Angara -0.798
- gendstat: Iran_GanjDareh_N ONG.SG -0.357
- gendstat: Iran_GanjDareh_N Botai -0.120
- gendstat: Iran_GanjDareh_N CHG -0.356
- gendstat: Russia_UstBelaya_Angara ONG.SG 0.473
- gendstat: Russia_UstBelaya_Angara Botai 0.659
- gendstat: Russia_UstBelaya_Angara CHG 0.385
- gendstat: ONG.SG Botai 0.194
- gendstat: ONG.SG CHG 0.007
- gendstat: Botai CHG -0.176
- ##end of qpAdm: 391.301 seconds cpu 1257.591 Mbytes in use
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