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misnomer001

hajji_firuz_ia = HF_C + aigyrzhal success

misnomer001
Jan 21st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 2010761916
  4.  
  5. left pops:
  6. Hajji_Firuz_IA
  7. Hajji_Firuz_C
  8. Aigyrzhal_BA
  9.  
  10. right pops:
  11. Sarazm_EN
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. CHG
  17. EEHG
  18. WEHG
  19. WSHG
  20. Onge.DG
  21. Russia_Shamanka_EN.SG
  22. Steppe_Eneolithic
  23. Caucasus_Eneolithic
  24. Kazakhstan_Botai.SG
  25.  
  26. 0 Hajji_Firuz_IA 1
  27. 1 Hajji_Firuz_C 5
  28. 2 Aigyrzhal_BA 2
  29. 3 Sarazm_EN 2
  30. 4 Ganj_Dareh_N 7
  31. 5 PPN 8
  32. 6 Anatolia_N 22
  33. 7 Iberia_MN 4
  34. 8 CHG 2
  35. 9 EEHG 4
  36. 10 WEHG 36
  37. 11 WSHG 3
  38. 12 Onge.DG 2
  39. 13 Russia_Shamanka_EN.SG 10
  40. 14 Steppe_Eneolithic 3
  41. 15 Caucasus_Eneolithic 3
  42. 16 Kazakhstan_Botai.SG 3
  43. jackknife block size: 0.050
  44. snps: 1150475 indivs: 117
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150475
  47. coverage: Hajji_Firuz_IA 479454
  48. coverage: Hajji_Firuz_C 1021945
  49. coverage: Aigyrzhal_BA 818114
  50. coverage: Sarazm_EN 867960
  51. coverage: Ganj_Dareh_N 1029695
  52. coverage: PPN 835499
  53. coverage: Anatolia_N 1134099
  54. coverage: Iberia_MN 967760
  55. coverage: CHG 1149558
  56. coverage: EEHG 1029995
  57. coverage: WEHG 1141246
  58. coverage: WSHG 858019
  59. coverage: Onge.DG 1120748
  60. coverage: Russia_Shamanka_EN.SG 1149998
  61. coverage: Steppe_Eneolithic 1017729
  62. coverage: Caucasus_Eneolithic 784983
  63. coverage: Kazakhstan_Botai.SG 1149870
  64. dof (jackknife): 459.768
  65. numsnps used: 1150475
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 12 chisq: 7.730 tail: 0.805869246 dofdiff: 14 chisqdiff: -7.730 taildiff: 1
  69. B:
  70. scale 1.000
  71. Ganj_Dareh_N 0.527
  72. PPN 1.635
  73. Anatolia_N 1.759
  74. Iberia_MN 1.308
  75. CHG 0.523
  76. EEHG -0.675
  77. WEHG 0.380
  78. WSHG -1.326
  79. Onge.DG -0.010
  80. Russia_Shamanka_EN.SG -0.189
  81. Steppe_Eneolithic -0.298
  82. Caucasus_Eneolithic 0.968
  83. Kazakhstan_Botai.SG -1.246
  84. A:
  85. scale 685.530
  86. Hajji_Firuz_C 0.410
  87. Aigyrzhal_BA -1.354
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 7.730 taildiff: 0.805869246
  93. B:
  94. scale 1.000 1.000
  95. Ganj_Dareh_N 0.521 -1.337
  96. PPN 1.630 -0.739
  97. Anatolia_N 1.755 1.557
  98. Iberia_MN 1.298 0.714
  99. CHG 0.520 -0.136
  100. EEHG -0.685 -1.136
  101. WEHG 0.373 -0.710
  102. WSHG -1.340 -0.138
  103. Onge.DG -0.008 -0.664
  104. Russia_Shamanka_EN.SG -0.196 0.855
  105. Steppe_Eneolithic -0.307 -0.444
  106. Caucasus_Eneolithic 0.962 0.945
  107. Kazakhstan_Botai.SG -1.255 1.908
  108. A:
  109. scale 682.010 9084.487
  110. Hajji_Firuz_C 0.388 1.057
  111. Aigyrzhal_BA -1.360 0.939
  112.  
  113.  
  114. best coefficients: 0.768 0.232
  115. Jackknife mean: 0.767679881 0.232320119
  116. std. errors: 0.028 0.028
  117.  
  118. error covariance (* 1000000)
  119. 777 -777
  120. -777 777
  121.  
  122.  
  123. summ: Hajji_Firuz_IA 2 0.805869 0.768 0.232 777 -777 777
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 00 0 12 7.730 0.805869 0.768 0.232
  127. 01 1 13 70.927 5.41554e-10 1.000 -0.000
  128. 10 1 13 490.171 0 0.000 1.000
  129. best pat: 00 0.805869 - -
  130. best pat: 01 5.41554e-10 chi(nested): 63.197 p-value for nested model: 1.86989e-15
  131.  
  132. coeffs: 0.768 0.232
  133.  
  134. ## dscore:: f_4(Base, Fit, Rbase, right2)
  135. ## genstat:: f_4(Base, Fit, right1, right2)
  136.  
  137. details: Hajji_Firuz_C Ganj_Dareh_N 0.000190 0.657417
  138. details: Aigyrzhal_BA Ganj_Dareh_N -0.001157 -3.904811
  139. dscore: Ganj_Dareh_N f4: -0.000123 Z: -0.453680
  140.  
  141. details: Hajji_Firuz_C PPN 0.000947 2.806261
  142. details: Aigyrzhal_BA PPN -0.003266 -9.322948
  143. dscore: PPN f4: -0.000032 Z: -0.100038
  144.  
  145. details: Hajji_Firuz_C Anatolia_N 0.001267 4.090248
  146. details: Aigyrzhal_BA Anatolia_N -0.003285 -9.507543
  147. dscore: Anatolia_N f4: 0.000209 Z: 0.705567
  148.  
  149. details: Hajji_Firuz_C Iberia_MN 0.000939 3.053844
  150. details: Aigyrzhal_BA Iberia_MN -0.002436 -7.660468
  151. dscore: Iberia_MN f4: 0.000155 Z: 0.536825
  152.  
  153. details: Hajji_Firuz_C CHG 0.000362 1.196079
  154. details: Aigyrzhal_BA CHG -0.001007 -3.162336
  155. dscore: CHG f4: 0.000044 Z: 0.152857
  156.  
  157. details: Hajji_Firuz_C EEHG -0.000428 -1.320297
  158. details: Aigyrzhal_BA EEHG 0.001323 3.734122
  159. dscore: EEHG f4: -0.000021 Z: -0.067527
  160.  
  161. details: Hajji_Firuz_C WEHG 0.000260 0.780235
  162. details: Aigyrzhal_BA WEHG -0.000725 -1.984222
  163. dscore: WEHG f4: 0.000031 Z: 0.098007
  164.  
  165. details: Hajji_Firuz_C WSHG -0.000675 -2.018385
  166. details: Aigyrzhal_BA WSHG 0.002744 7.400856
  167. dscore: WSHG f4: 0.000120 Z: 0.374005
  168.  
  169. details: Hajji_Firuz_C Onge.DG 0.000011 0.032091
  170. details: Aigyrzhal_BA Onge.DG -0.000010 -0.028298
  171. dscore: Onge.DG f4: 0.000006 Z: 0.018791
  172.  
  173. details: Hajji_Firuz_C Russia_Shamanka_EN.SG 0.000123 0.374114
  174. details: Aigyrzhal_BA Russia_Shamanka_EN.SG 0.000576 1.625751
  175. dscore: Russia_Shamanka_EN.SG f4: 0.000229 Z: 0.729416
  176.  
  177. details: Hajji_Firuz_C Steppe_Eneolithic -0.000146 -0.502743
  178. details: Aigyrzhal_BA Steppe_Eneolithic 0.000624 1.999424
  179. dscore: Steppe_Eneolithic f4: 0.000033 Z: 0.119878
  180.  
  181. details: Hajji_Firuz_C Caucasus_Eneolithic 0.000800 2.382144
  182. details: Aigyrzhal_BA Caucasus_Eneolithic -0.001722 -4.925655
  183. dscore: Caucasus_Eneolithic f4: 0.000214 Z: 0.681588
  184.  
  185. details: Hajji_Firuz_C Kazakhstan_Botai.SG -0.000396 -1.281513
  186. details: Aigyrzhal_BA Kazakhstan_Botai.SG 0.002780 8.135700
  187. dscore: Kazakhstan_Botai.SG f4: 0.000342 Z: 1.154450
  188.  
  189. gendstat: Sarazm_EN Ganj_Dareh_N -0.454
  190. gendstat: Sarazm_EN PPN -0.100
  191. gendstat: Sarazm_EN Anatolia_N 0.706
  192. gendstat: Sarazm_EN Iberia_MN 0.537
  193. gendstat: Sarazm_EN CHG 0.153
  194. gendstat: Sarazm_EN EEHG -0.068
  195. gendstat: Sarazm_EN WEHG 0.098
  196. gendstat: Sarazm_EN WSHG 0.374
  197. gendstat: Sarazm_EN Onge.DG 0.019
  198. gendstat: Sarazm_EN Russia_Shamanka_EN.SG 0.729
  199. gendstat: Sarazm_EN Steppe_Eneolithic 0.120
  200. gendstat: Sarazm_EN Caucasus_Eneolithic 0.682
  201. gendstat: Sarazm_EN Kazakhstan_Botai.SG 1.154
  202. gendstat: Ganj_Dareh_N PPN 0.313
  203. gendstat: Ganj_Dareh_N Anatolia_N 1.347
  204. gendstat: Ganj_Dareh_N Iberia_MN 1.043
  205. gendstat: Ganj_Dareh_N CHG 0.603
  206. gendstat: Ganj_Dareh_N EEHG 0.370
  207. gendstat: Ganj_Dareh_N WEHG 0.574
  208. gendstat: Ganj_Dareh_N WSHG 0.835
  209. gendstat: Ganj_Dareh_N Onge.DG 0.460
  210. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 1.329
  211. gendstat: Ganj_Dareh_N Steppe_Eneolithic 0.653
  212. gendstat: Ganj_Dareh_N Caucasus_Eneolithic 1.118
  213. gendstat: Ganj_Dareh_N Kazakhstan_Botai.SG 1.770
  214. gendstat: PPN Anatolia_N 1.220
  215. gendstat: PPN Iberia_MN 0.779
  216. gendstat: PPN CHG 0.254
  217. gendstat: PPN EEHG 0.037
  218. gendstat: PPN WEHG 0.246
  219. gendstat: PPN WSHG 0.488
  220. gendstat: PPN Onge.DG 0.125
  221. gendstat: PPN Russia_Shamanka_EN.SG 0.887
  222. gendstat: PPN Steppe_Eneolithic 0.236
  223. gendstat: PPN Caucasus_Eneolithic 0.781
  224. gendstat: PPN Kazakhstan_Botai.SG 1.254
  225. gendstat: Anatolia_N Iberia_MN -0.313
  226. gendstat: Anatolia_N CHG -0.640
  227. gendstat: Anatolia_N EEHG -0.940
  228. gendstat: Anatolia_N WEHG -0.925
  229. gendstat: Anatolia_N WSHG -0.321
  230. gendstat: Anatolia_N Onge.DG -0.777
  231. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.080
  232. gendstat: Anatolia_N Steppe_Eneolithic -0.803
  233. gendstat: Anatolia_N Caucasus_Eneolithic 0.019
  234. gendstat: Anatolia_N Kazakhstan_Botai.SG 0.534
  235. gendstat: Iberia_MN CHG -0.407
  236. gendstat: Iberia_MN EEHG -0.666
  237. gendstat: Iberia_MN WEHG -0.585
  238. gendstat: Iberia_MN WSHG -0.122
  239. gendstat: Iberia_MN Onge.DG -0.526
  240. gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.283
  241. gendstat: Iberia_MN Steppe_Eneolithic -0.492
  242. gendstat: Iberia_MN Caucasus_Eneolithic 0.205
  243. gendstat: Iberia_MN Kazakhstan_Botai.SG 0.699
  244. gendstat: CHG EEHG -0.219
  245. gendstat: CHG WEHG -0.041
  246. gendstat: CHG WSHG 0.245
  247. gendstat: CHG Onge.DG -0.125
  248. gendstat: CHG Russia_Shamanka_EN.SG 0.645
  249. gendstat: CHG Steppe_Eneolithic -0.041
  250. gendstat: CHG Caucasus_Eneolithic 0.562
  251. gendstat: CHG Kazakhstan_Botai.SG 1.036
  252. gendstat: EEHG WEHG 0.232
  253. gendstat: EEHG WSHG 0.520
  254. gendstat: EEHG Onge.DG 0.090
  255. gendstat: EEHG Russia_Shamanka_EN.SG 0.947
  256. gendstat: EEHG Steppe_Eneolithic 0.223
  257. gendstat: EEHG Caucasus_Eneolithic 0.772
  258. gendstat: EEHG Kazakhstan_Botai.SG 1.585
  259. gendstat: WEHG WSHG 0.349
  260. gendstat: WEHG Onge.DG -0.095
  261. gendstat: WEHG Russia_Shamanka_EN.SG 0.807
  262. gendstat: WEHG Steppe_Eneolithic 0.008
  263. gendstat: WEHG Caucasus_Eneolithic 0.614
  264. gendstat: WEHG Kazakhstan_Botai.SG 1.359
  265. gendstat: WSHG Onge.DG -0.371
  266. gendstat: WSHG Russia_Shamanka_EN.SG 0.420
  267. gendstat: WSHG Steppe_Eneolithic -0.324
  268. gendstat: WSHG Caucasus_Eneolithic 0.275
  269. gendstat: WSHG Kazakhstan_Botai.SG 0.973
  270. gendstat: Onge.DG Russia_Shamanka_EN.SG 0.890
  271. gendstat: Onge.DG Steppe_Eneolithic 0.096
  272. gendstat: Onge.DG Caucasus_Eneolithic 0.659
  273. gendstat: Onge.DG Kazakhstan_Botai.SG 1.213
  274. gendstat: Russia_Shamanka_EN.SG Steppe_Eneolithic -0.751
  275. gendstat: Russia_Shamanka_EN.SG Caucasus_Eneolithic -0.046
  276. gendstat: Russia_Shamanka_EN.SG Kazakhstan_Botai.SG 0.504
  277. gendstat: Steppe_Eneolithic Caucasus_Eneolithic 0.639
  278. gendstat: Steppe_Eneolithic Kazakhstan_Botai.SG 1.324
  279. gendstat: Caucasus_Eneolithic Kazakhstan_Botai.SG 0.406
  280.  
  281. ## end of run
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