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Sep 21st, 2024
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  1. /home/dosas/AdmixTools/src/qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: /home/dosas/Documents/qpAdm/fstatsa.txt
  5. popleft: /home/dosas/Documents/qpAdm/left.txt
  6. popright: /home/dosas/Documents/qpAdm/right.txt
  7. details: YES
  8. ## /home/dosas/AdmixTools/src/qpAdm -p parqpadm.txt
  9. ## qpAdm version: 2050
  10. seed: 22522873
  11. inbreed set NO
  12.  
  13. left pops:
  14. dosasnebula
  15. Turkey_WestByzantine
  16. Russia_Sunghir_Medieval.SG
  17.  
  18. right pops:
  19. Mbuti.DG
  20. Russia_Ust_Ishim.DG
  21. China_Tianyuan
  22. Russia_Sunghir3.SG
  23. Russia_Kostenki14.SG
  24. Russia_MA1_HG.SG
  25. SATP
  26. Russia_DevilsCave_N.SG
  27. Papuan.DG
  28. Switzerland_Bichon.SG
  29. Israel_Natufian
  30. Morocco_Iberomaurusian
  31. WHG
  32. Turkey_Epipaleolithic
  33. ONG.SG
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 1 dof: 13 chisq: 15.220 tail: 0.293820613 dofdiff: 15 chisqdiff: -15.220 taildiff: 1
  38. B:
  39. scale 1.000
  40. Russia_Ust_Ishim.DG 0.648
  41. China_Tianyuan 0.435
  42. Russia_Sunghir3.SG 1.089
  43. Russia_Kostenki14.SG 0.690
  44. Russia_MA1_HG.SG 1.239
  45. SATP 0.112
  46. Russia_DevilsCave_N.SG 0.782
  47. Papuan.DG 0.368
  48. Switzerland_Bichon.SG 2.058
  49. Israel_Natufian -0.832
  50. Morocco_Iberomaurusian -0.250
  51. WHG 1.946
  52. Turkey_Epipaleolithic -0.387
  53. ONG.SG 0.713
  54. A:
  55. scale 572.569
  56. Turkey_WestByzantine -0.293
  57. Russia_Sunghir_Medieval.SG 1.384
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 15.220 taildiff: 0.293820613
  63. B:
  64. scale 1641.127 385.154
  65. Russia_Ust_Ishim.DG -0.215 0.686
  66. China_Tianyuan 0.545 0.641
  67. Russia_Sunghir3.SG -0.668 1.076
  68. Russia_Kostenki14.SG 0.496 0.875
  69. Russia_MA1_HG.SG -1.751 0.977
  70. SATP -0.907 -0.107
  71. Russia_DevilsCave_N.SG 0.532 1.043
  72. Papuan.DG -0.406 0.349
  73. Switzerland_Bichon.SG -1.285 2.067
  74. Israel_Natufian 1.309 -0.628
  75. Morocco_Iberomaurusian 1.027 -0.034
  76. WHG -1.281 1.925
  77. Turkey_Epipaleolithic 1.602 -0.031
  78. ONG.SG 0.036 0.804
  79. A:
  80. scale 1.414 1.414
  81. Turkey_WestByzantine 1.414 0.000
  82. Russia_Sunghir_Medieval.SG 0.000 1.414
  83.  
  84.  
  85. best coefficients: 0.825 0.175
  86. totmean: 0.825 0.175
  87. zzevarboot
  88. 0.751833595 0.248166405
  89. -0.000808633
  90. 0.002449799
  91. zzevarboot2
  92. 0.905724726 0.094275274
  93. -0.000250420
  94. 0.002405841
  95. boot mean: 0.826 0.174
  96. bootstrap saimpling of F-coeffs: 1000
  97. zzjmean 0.826 0.174
  98. std. errors: 0.058 0.058
  99.  
  100. error covariance (* 1,000,000)
  101. 3328 -3328
  102. -3328 3328
  103.  
  104.  
  105. summ: dosasnebula 2 0.293821 0.826 0.174 3328 -3328 3328
  106.  
  107. fixed pat wt dof chisq tail prob
  108. 00 0 13 15.220 0.293821 0.825 0.175
  109. 01 1 14 25.601 0.0290779 1.000 0.000
  110. 10 1 14 156.869 3.02048e-26 0.000 1.000
  111. best pat: 00 0.293821 - -
  112. best pat: 01 0.0290779 chi(nested): 10.381 p-value for nested model: 0.00127322
  113.  
  114. coeffs: 0.825 0.175
  115.  
  116. ## dscore:: f_4(Base, Fit, Rbase, right2)
  117. ## genstat:: f_4(Base, Fit, right1, right2)
  118.  
  119. details: Turkey_WestByzantine Russia_Ust_Ishim.DG -0.000131 -0.290041
  120. details: Russia_Sunghir_Medieval.SG Russia_Ust_Ishim.DG 0.001780 3.028417
  121. dscore: Russia_Ust_Ishim.DG f4: 0.000203 Z: 0.452755
  122.  
  123. details: Turkey_WestByzantine China_Tianyuan 0.000332 0.723397
  124. details: Russia_Sunghir_Medieval.SG China_Tianyuan 0.001664 2.687314
  125. dscore: China_Tianyuan f4: 0.000565 Z: 1.228896
  126.  
  127. details: Turkey_WestByzantine Russia_Sunghir3.SG -0.000407 -0.822504
  128. details: Russia_Sunghir_Medieval.SG Russia_Sunghir3.SG 0.002793 4.340055
  129. dscore: Russia_Sunghir3.SG f4: 0.000152 Z: 0.309172
  130.  
  131. details: Turkey_WestByzantine Russia_Kostenki14.SG 0.000303 0.627880
  132. details: Russia_Sunghir_Medieval.SG Russia_Kostenki14.SG 0.002271 3.776891
  133. dscore: Russia_Kostenki14.SG f4: 0.000647 Z: 1.358389
  134.  
  135. details: Turkey_WestByzantine Russia_MA1_HG.SG -0.001067 -2.052510
  136. details: Russia_Sunghir_Medieval.SG Russia_MA1_HG.SG 0.002537 3.778536
  137. dscore: Russia_MA1_HG.SG f4: -0.000437 Z: -0.842093
  138.  
  139. details: Turkey_WestByzantine SATP -0.000552 -1.130735
  140. details: Russia_Sunghir_Medieval.SG SATP -0.000279 -0.437101
  141. dscore: SATP f4: -0.000505 Z: -1.038197
  142.  
  143. details: Turkey_WestByzantine Russia_DevilsCave_N.SG 0.000324 0.864331
  144. details: Russia_Sunghir_Medieval.SG Russia_DevilsCave_N.SG 0.002709 5.549608
  145. dscore: Russia_DevilsCave_N.SG f4: 0.000741 Z: 1.985125
  146.  
  147. details: Turkey_WestByzantine Papuan.DG -0.000248 -0.692663
  148. details: Russia_Sunghir_Medieval.SG Papuan.DG 0.000906 1.900589
  149. dscore: Papuan.DG f4: -0.000046 Z: -0.128892
  150.  
  151. details: Turkey_WestByzantine Switzerland_Bichon.SG -0.000783 -1.596312
  152. details: Russia_Sunghir_Medieval.SG Switzerland_Bichon.SG 0.005367 7.954784
  153. dscore: Switzerland_Bichon.SG f4: 0.000292 Z: 0.589295
  154.  
  155. details: Turkey_WestByzantine Israel_Natufian 0.000798 1.567659
  156. details: Russia_Sunghir_Medieval.SG Israel_Natufian -0.001630 -2.331291
  157. dscore: Israel_Natufian f4: 0.000373 Z: 0.731508
  158.  
  159. details: Turkey_WestByzantine Morocco_Iberomaurusian 0.000626 1.807981
  160. details: Russia_Sunghir_Medieval.SG Morocco_Iberomaurusian -0.000089 -0.198141
  161. dscore: Morocco_Iberomaurusian f4: 0.000501 Z: 1.449823
  162.  
  163. details: Turkey_WestByzantine WHG -0.000780 -1.674301
  164. details: Russia_Sunghir_Medieval.SG WHG 0.004997 7.931658
  165. dscore: WHG f4: 0.000229 Z: 0.491520
  166.  
  167. details: Turkey_WestByzantine Turkey_Epipaleolithic 0.000976 1.901749
  168. details: Russia_Sunghir_Medieval.SG Turkey_Epipaleolithic -0.000081 -0.122374
  169. dscore: Turkey_Epipaleolithic f4: 0.000791 Z: 1.543477
  170.  
  171. details: Turkey_WestByzantine ONG.SG 0.000022 0.058661
  172. details: Russia_Sunghir_Medieval.SG ONG.SG 0.002086 4.308339
  173. dscore: ONG.SG f4: 0.000383 Z: 1.033172
  174.  
  175. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.453
  176. gendstat: Mbuti.DG China_Tianyuan 1.229
  177. gendstat: Mbuti.DG Russia_Sunghir3.SG 0.309
  178. gendstat: Mbuti.DG Russia_Kostenki14.SG 1.358
  179. gendstat: Mbuti.DG Russia_MA1_HG.SG -0.842
  180. gendstat: Mbuti.DG SATP -1.038
  181. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 1.985
  182. gendstat: Mbuti.DG Papuan.DG -0.129
  183. gendstat: Mbuti.DG Switzerland_Bichon.SG 0.589
  184. gendstat: Mbuti.DG Israel_Natufian 0.732
  185. gendstat: Mbuti.DG Morocco_Iberomaurusian 1.450
  186. gendstat: Mbuti.DG WHG 0.492
  187. gendstat: Mbuti.DG Turkey_Epipaleolithic 1.543
  188. gendstat: Mbuti.DG ONG.SG 1.033
  189. gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.674
  190. gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.092
  191. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.807
  192. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -1.111
  193. gendstat: Russia_Ust_Ishim.DG SATP -1.215
  194. gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG 1.140
  195. gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.545
  196. gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG 0.157
  197. gendstat: Russia_Ust_Ishim.DG Israel_Natufian 0.274
  198. gendstat: Russia_Ust_Ishim.DG Morocco_Iberomaurusian 0.591
  199. gendstat: Russia_Ust_Ishim.DG WHG 0.047
  200. gendstat: Russia_Ust_Ishim.DG Turkey_Epipaleolithic 0.985
  201. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.397
  202. gendstat: China_Tianyuan Russia_Sunghir3.SG -0.746
  203. gendstat: China_Tianyuan Russia_Kostenki14.SG 0.146
  204. gendstat: China_Tianyuan Russia_MA1_HG.SG -1.660
  205. gendstat: China_Tianyuan SATP -1.727
  206. gendstat: China_Tianyuan Russia_DevilsCave_N.SG 0.379
  207. gendstat: China_Tianyuan Papuan.DG -1.362
  208. gendstat: China_Tianyuan Switzerland_Bichon.SG -0.455
  209. gendstat: China_Tianyuan Israel_Natufian -0.291
  210. gendstat: China_Tianyuan Morocco_Iberomaurusian -0.125
  211. gendstat: China_Tianyuan WHG -0.586
  212. gendstat: China_Tianyuan Turkey_Epipaleolithic 0.382
  213. gendstat: China_Tianyuan ONG.SG -0.393
  214. gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.934
  215. gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -1.026
  216. gendstat: Russia_Sunghir3.SG SATP -1.043
  217. gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 1.125
  218. gendstat: Russia_Sunghir3.SG Papuan.DG -0.395
  219. gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG 0.247
  220. gendstat: Russia_Sunghir3.SG Israel_Natufian 0.348
  221. gendstat: Russia_Sunghir3.SG Morocco_Iberomaurusian 0.641
  222. gendstat: Russia_Sunghir3.SG WHG 0.137
  223. gendstat: Russia_Sunghir3.SG Turkey_Epipaleolithic 1.071
  224. gendstat: Russia_Sunghir3.SG ONG.SG 0.448
  225. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.918
  226. gendstat: Russia_Kostenki14.SG SATP -1.919
  227. gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.184
  228. gendstat: Russia_Kostenki14.SG Papuan.DG -1.395
  229. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -0.647
  230. gendstat: Russia_Kostenki14.SG Israel_Natufian -0.449
  231. gendstat: Russia_Kostenki14.SG Morocco_Iberomaurusian -0.285
  232. gendstat: Russia_Kostenki14.SG WHG -0.785
  233. gendstat: Russia_Kostenki14.SG Turkey_Epipaleolithic 0.249
  234. gendstat: Russia_Kostenki14.SG ONG.SG -0.519
  235. gendstat: Russia_MA1_HG.SG SATP -0.108
  236. gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 2.164
  237. gendstat: Russia_MA1_HG.SG Papuan.DG 0.765
  238. gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG 1.246
  239. gendstat: Russia_MA1_HG.SG Israel_Natufian 1.250
  240. gendstat: Russia_MA1_HG.SG Morocco_Iberomaurusian 1.729
  241. gendstat: Russia_MA1_HG.SG WHG 1.133
  242. gendstat: Russia_MA1_HG.SG Turkey_Epipaleolithic 1.975
  243. gendstat: Russia_MA1_HG.SG ONG.SG 1.567
  244. gendstat: SATP Russia_DevilsCave_N.SG 2.334
  245. gendstat: SATP Papuan.DG 0.861
  246. gendstat: SATP Switzerland_Bichon.SG 1.379
  247. gendstat: SATP Israel_Natufian 1.373
  248. gendstat: SATP Morocco_Iberomaurusian 1.812
  249. gendstat: SATP WHG 1.278
  250. gendstat: SATP Turkey_Epipaleolithic 2.062
  251. gendstat: SATP ONG.SG 1.718
  252. gendstat: Russia_DevilsCave_N.SG Papuan.DG -2.089
  253. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.835
  254. gendstat: Russia_DevilsCave_N.SG Israel_Natufian -0.634
  255. gendstat: Russia_DevilsCave_N.SG Morocco_Iberomaurusian -0.552
  256. gendstat: Russia_DevilsCave_N.SG WHG -1.024
  257. gendstat: Russia_DevilsCave_N.SG Turkey_Epipaleolithic 0.092
  258. gendstat: Russia_DevilsCave_N.SG ONG.SG -0.976
  259. gendstat: Papuan.DG Switzerland_Bichon.SG 0.657
  260. gendstat: Papuan.DG Israel_Natufian 0.725
  261. gendstat: Papuan.DG Morocco_Iberomaurusian 1.283
  262. gendstat: Papuan.DG WHG 0.557
  263. gendstat: Papuan.DG Turkey_Epipaleolithic 1.569
  264. gendstat: Papuan.DG ONG.SG 1.236
  265. gendstat: Switzerland_Bichon.SG Israel_Natufian 0.130
  266. gendstat: Switzerland_Bichon.SG Morocco_Iberomaurusian 0.400
  267. gendstat: Switzerland_Bichon.SG WHG -0.137
  268. gendstat: Switzerland_Bichon.SG Turkey_Epipaleolithic 0.821
  269. gendstat: Switzerland_Bichon.SG ONG.SG 0.171
  270. gendstat: Israel_Natufian Morocco_Iberomaurusian 0.242
  271. gendstat: Israel_Natufian WHG -0.230
  272. gendstat: Israel_Natufian Turkey_Epipaleolithic 0.660
  273. gendstat: Israel_Natufian ONG.SG 0.016
  274. gendstat: Morocco_Iberomaurusian WHG -0.535
  275. gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic 0.574
  276. gendstat: Morocco_Iberomaurusian ONG.SG -0.272
  277. gendstat: WHG Turkey_Epipaleolithic 0.983
  278. gendstat: WHG ONG.SG 0.310
  279. gendstat: Turkey_Epipaleolithic ONG.SG -0.747
  280.  
  281. worst Z-score with right hand mix
  282. f4(Target, Fit, Base, mix of Right pops; Z: 3.910 sum: 1.000
  283. Russia_Ust_Ishim.DG -0.055
  284. China_Tianyuan 0.304
  285. Russia_Sunghir3.SG -0.197
  286. Russia_Kostenki14.SG 0.561
  287. Russia_MA1_HG.SG -0.735
  288. SATP -0.754
  289. Russia_DevilsCave_N.SG 1.173
  290. Papuan.DG -0.987
  291. Switzerland_Bichon.SG 0.278
  292. Israel_Natufian 0.112
  293. Morocco_Iberomaurusian 0.476
  294. WHG -0.176
  295. Turkey_Epipaleolithic 0.497
  296. ONG.SG 0.503
  297.  
  298. oldmode set: terminating
  299. ##end of qpAdm: 1.171 seconds cpu 0.844 Mbytes in use
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