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SpaceQuester

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Jun 27th, 2017
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  1. #define _USE_MATH_DEFINES
  2. #include "math.h"
  3. #include <stdlib.h>
  4. #include <stdio.h>
  5. #include <locale.h>
  6. #include <time.h>
  7. #include <stdbool.h>
  8.  
  9. #define N 4
  10.  
  11. #define V f[0]
  12. #define m f[1]
  13. #define n f[2]
  14. #define h f[3]
  15.  
  16. double f[N];
  17.  
  18. double C = 1;
  19.  
  20. double g_K = 36;
  21. double g_Na = 120;
  22. double g_L = 0.3;
  23.  
  24. double E_K = -77;
  25. double E_Na = 55;
  26. double E_L = -54.4;
  27.  
  28. double I_app = 8.9;
  29.  
  30. int RandomI(int min, int max)
  31. {
  32. return ((double)rand() / (RAND_MAX - 1)) * (max - min) + min;
  33. }
  34.  
  35. double RandomD(double min, double max)
  36. {
  37. return ((double)rand() / RAND_MAX) * (max - min) + min;
  38. }
  39.  
  40. double alpha_n(double f[N])
  41. {
  42. return 0.01 * (V + 55) / (1 - exp(-(V + 55) / 10));
  43. }
  44.  
  45. double beta_n(double f[N])
  46. {
  47. return 0.125 * exp(-(V + 65) / 80);
  48. }
  49.  
  50. double alpha_m(double f[N])
  51. {
  52. return 0.1 * (V + 40) / (1 - exp(-(V + 40) / 10));
  53. }
  54.  
  55. double beta_m(double f[N])
  56. {
  57. return 4 * exp(-(V + 65) / 18);
  58. }
  59.  
  60. double alpha_h(double f[N])
  61. {
  62. return 0.07 * exp(-(V + 65) / 20);
  63. }
  64.  
  65. double beta_h(double f[N])
  66. {
  67. return 1 / (exp(-(V + 35) / 10) + 1);
  68. }
  69.  
  70. double HodgkinHuxley(int i, double f[N])
  71. {
  72. switch (i)
  73. {
  74. case 0:
  75. return (g_Na * m * m * m * h * (E_Na - V) + g_K * n * n * n * n * (E_K - V) + g_L * (E_L - V) + I_app) / C;
  76.  
  77. case 1:
  78. return alpha_m(f) * (1 - m) - beta_m(f) * m;
  79.  
  80. case 2:
  81. return alpha_n(f) * (1 - n) - beta_n(f) * n;
  82.  
  83. case 3:
  84. return alpha_h(f) * (1 - h) - beta_h(f) * h;
  85. }
  86. return 0;
  87. }
  88.  
  89. void RungeKutta(double dt, double f[N], double f_next[N])
  90. {
  91. double k[N][4];
  92.  
  93. // k1
  94. for (int i = 0; i < N; i++)
  95. k[i][0] = HodgkinHuxley(i, f) * dt;
  96.  
  97. double phi_k1[N];
  98. for (int i = 0; i < N; i++)
  99. phi_k1[i] = f[i] + k[i][0] / 2;
  100.  
  101. // k2
  102. for (int i = 0; i < N; i++)
  103. k[i][1] = HodgkinHuxley(i, phi_k1) * dt;
  104.  
  105. double phi_k2[N];
  106. for (int i = 0; i < N; i++)
  107. phi_k2[i] = f[i] + k[i][1] / 2;
  108.  
  109. // k3
  110. for (int i = 0; i < N; i++)
  111. k[i][2] = HodgkinHuxley(i, phi_k2) * dt;
  112.  
  113. double phi_k3[N];
  114. for (int i = 0; i < N; i++)
  115. phi_k3[i] = f[i] + k[i][2] / 2;
  116.  
  117. // k4
  118. for (int i = 0; i < N; i++)
  119. k[i][3] = HodgkinHuxley(i, phi_k3) * dt;
  120.  
  121. for (int i = 0; i < N; i++)
  122. f_next[i] = f[i] + (k[i][0] + 2 * k[i][1] + 2 * k[i][2] + k[i][3]) / 6;
  123. }
  124.  
  125. void CopyArray(double source[N], double target[N])
  126. {
  127. for (int i = 0; i < N; i++)
  128. target[i] = source[i];
  129. }
  130.  
  131. bool Approximately(double a, double b)
  132. {
  133. if (a < 0)
  134. a = -a;
  135.  
  136. if (b < 0)
  137. b = -b;
  138.  
  139. return a - b <= 0.000001;
  140. }
  141.  
  142. int main(int argc, char *argv[])
  143. {
  144. FILE *fp0;
  145. srand(time(NULL));
  146.  
  147. for (int i = 0; i < N; i++)
  148. f[i] = 0;
  149.  
  150. const double t_start = 0;
  151. const double t_max = 100;
  152. const double dt = 0.0001;
  153.  
  154. double t = t_start;
  155.  
  156. fp0 = fopen("results.txt", "w+");
  157. //setlocale(LC_NUMERIC, "French_Canada.1252");
  158.  
  159. clock_t start_rk4, end_rk4;
  160. start_rk4 = clock();
  161. int lastPercent = -1;
  162.  
  163. while (t < t_max || Approximately(t, t_max))
  164. {
  165. fprintf(fp0, "%f\t", t);
  166. fprintf(fp0, "%f\t", I_app);
  167. for (int i = 0; i < N; i++)
  168. {
  169. fprintf(fp0, i == N - 1 ? "%f" : "%f\t", f[i]);
  170. }
  171. fprintf(fp0, "\n");
  172.  
  173. double f_next[N];
  174.  
  175. RungeKutta(dt, f, f_next);
  176. CopyArray(f_next, f);
  177.  
  178. t += dt;
  179.  
  180. int percent = (int)(100 * (t - t_start) / (t_max - t_start));
  181. if (percent != lastPercent)
  182. {
  183. printf("Progress: %d%%\n", percent);
  184. lastPercent = percent;
  185. }
  186. }
  187.  
  188. end_rk4 = clock();
  189. double extime_rk4 = (double)(end_rk4 - start_rk4) / CLOCKS_PER_SEC;
  190. int minutes = (int)extime_rk4 / 60;
  191. int seconds = (int)extime_rk4 % 60;
  192. printf("\nExecution time is: %d minutes %d seconds\n ", minutes, seconds);
  193.  
  194. fclose(fp0);
  195.  
  196. fp0 = fopen("time_exec.txt", "w+");
  197. fprintf(fp0, "%f\n", extime_rk4);
  198. fclose(fp0);
  199. }
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