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- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Croatia_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Lebanon_MBA.SG')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Greece_Delphi_BA_Mycenaean', 'Russia_Sunghir_Medieval.SG')
- target = c('Greek.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.0809
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Greek.HO Aegean(Roman_era_1-200AD).SG 0.621 0.0378 16.4
- 2 Greek.HO Albania_BA_IA 0.0278 0.0592 0.470
- 3 Greek.HO Russia_Sunghir_Medieval.SG 0.352 0.0295 11.9
- ```
- ```c
- P 0.114
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Greek.HO Aegean(Roman_era_1-200AD).SG 0.586 0.0597 9.81
- 2 Greek.HO Greece_Delphi_BA_Mycenaean 0.0560 0.0624 0.897
- 3 Greek.HO Russia_Sunghir_Medieval.SG 0.358 0.0166 21.5
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Lebanon_MBA.SG')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Croatia_EIA', 'Russia_Sunghir_Medieval.SG')
- target = c('Montenegro_Doclea_Roman.SG')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.179
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Montenegro_Doclea_Roman.SG Aegean(Roman_era_1-200AD).SG 0.198 0.0423 4.67
- 2 Montenegro_Doclea_Roman.SG Croatia_EIA 0.126 0.0683 1.84
- 3 Montenegro_Doclea_Roman.SG Russia_Sunghir_Medieval.SG 0.676 0.0491 13.8
- ```
- ```c
- P 0.0457
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Croatian.HO Aegean(Roman_era_1-200AD).SG 0.249 0.0383 6.51
- 2 Croatian.HO Croatia_EIA 0.0529 0.0614 0.862
- 3 Croatian.HO Russia_Sunghir_Medieval.SG 0.698 0.0437 16.0
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Croatia_EIA', 'Russia_Sunghir_Medieval.SG', 'Lebanon_MBA.SG')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Greece_Delphi_BA_Mycenaean', 'Montenegro_Doclea_Roman.SG')
- target = c('Greek.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.278
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Greek.HO Aegean(Roman_era_1-200AD).SG 0.521 0.0408 12.8
- 2 Greek.HO Greece_Delphi_BA_Mycenaean -0.00820 0.0420 -0.195
- 3 Greek.HO Montenegro_Doclea_Roman.SG 0.487 0.0189 25.8
- ```
- ```c
- P 0.352
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Greek.HO Aegean(Roman_era_1-200AD).SG 0.514 0.0180 28.6
- 2 Greek.HO Montenegro_Doclea_Roman.SG 0.486 0.0180 27.0
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Croatia_EIA')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Lebanon_MBA.SG', 'Russia_Sunghir_Medieval.SG', 'Tajikistan_Ksirov_Kushan')
- target = c('Cypriot.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.0314
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Cypriot.HO Aegean(Roman_era_1-200AD).SG 0.643 0.0606 10.6
- 2 Cypriot.HO Lebanon_MBA.SG 0.246 0.0541 4.54
- 3 Cypriot.HO Russia_Sunghir_Medieval.SG 0.0353 0.0230 1.53
- 4 Cypriot.HO Tajikistan_Ksirov_Kushan 0.0763 0.0275 2.77
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Croatia_EIA', 'Turkey_Alalakh_MLBA')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Lebanon_MBA.SG', 'Russia_Sunghir_Medieval.SG', 'Tajikistan_Ksirov_Kushan')
- target = c('Cypriot.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.0217
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Cypriot.HO Aegean(Roman_era_1-200AD).SG 0.652 0.0603 10.8
- 2 Cypriot.HO Lebanon_MBA.SG 0.232 0.0530 4.38
- 3 Cypriot.HO Russia_Sunghir_Medieval.SG 0.0344 0.0235 1.47
- 4 Cypriot.HO Tajikistan_Ksirov_Kushan 0.0814 0.0273 2.98
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Croatia_EIA', 'Turkey_Alalakh_MLBA', 'Tajikistan_Ksirov_Kushan')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Lebanon_MBA.SG', 'Russia_Sunghir_Medieval.SG')
- target = c('Cypriot.HO')
- ```
- ```c
- P 0.000377
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Cypriot.HO Aegean(Roman_era_1-200AD).SG 0.639 0.0641 9.97
- 2 Cypriot.HO Lebanon_MBA.SG 0.283 0.0527 5.36
- 3 Cypriot.HO Russia_Sunghir_Medieval.SG 0.0780 0.0176 4.43
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Croatia_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Lebanon_MBA.SG')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Bulgaria_EIA', 'Russia_Sunghir_Medieval.SG')
- target = c('Bulgarian.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.0271
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Bulgarian.HO Aegean(Roman_era_1-200AD).SG 0.452 0.0512 8.81
- 2 Bulgarian.HO Bulgaria_EIA 0.000506 0.0551 0.00918
- 3 Bulgarian.HO Russia_Sunghir_Medieval.SG 0.548 0.0248 22.1
- P 0.4.93e- 14
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Bulgarian.HO Bulgaria_EIA 0.374 0.0308 12.2
- 2 Bulgarian.HO Russia_Sunghir_Medieval.SG 0.626 0.0308 20.3
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Croatia_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Lebanon_MBA.SG', 'Bulgaria_EIA')
- left = c('Aegean(Roman_era_1-200AD).SG', 'Albania_BA_IA', 'Russia_Sunghir_Medieval.SG')
- target = c('Bulgarian.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.0389
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Bulgarian.HO Aegean(Roman_era_1-200AD).SG 0.430 0.0512 8.41
- 2 Bulgarian.HO Albania_BA_IA 0.0394 0.0796 0.495
- 3 Bulgarian.HO Russia_Sunghir_Medieval.SG 0.530 0.0403 13.2
- ```
- ```c
- P 0.203
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Croatian.HO Aegean(Roman_era_1-200AD).SG 0.0174 0.0290 0.601
- 2 Croatian.HO Montenegro_Doclea_Roman.SG 0.983 0.0290 33.9
- ```
- ```c
- P 0.0293
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Albanian.HO Aegean(Roman_era_1-200AD).SG 0.505 0.0452 11.2
- 2 Albanian.HO Albania_BA_IA 0.124 0.0700 1.77
- 3 Albanian.HO Russia_Sunghir_Medieval.SG 0.371 0.0365 10.2
- ```
- ```c
- P 0.0153
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Albanian.HO Aegean(Roman_era_1-200AD).SG 0.500 0.0485 10.3
- 2 Albanian.HO Bulgaria_EIA 0.0913 0.0522 1.75
- 3 Albanian.HO Russia_Sunghir_Medieval.SG 0.409 0.0240 17.1
- ```
- ```c
- right = c('Mbuti.HO', 'Russia_Samara_EBA_Yamnaya', 'Russia_Karelia_HG', 'Serbia_IronGates_Mesolithic', 'Turkey_N', 'Iran_GanjDareh_N', 'Spain_IA', 'Greece_Minoan_Lassithi', 'Croatia_MLBA', 'Netherlands_EIA', 'Netherlands_MBA', 'Russia_IA_Ingria.SG', 'Latvia_BA', 'Turkey_EBA_II.SG', 'Israel_C', 'Armenia_EBA_KuraAraxes', 'Mongolia_North_N', 'Bulgaria_EIA', 'Greece_BA_Mycenaean', 'Macedonia_Classical_Hellenistic', 'Russia_MLBA_Sintashta', 'Iran_C_SehGabi', 'Lebanon_MBA.SG', 'Croatia_EIA', 'Russia_Sunghir_Medieval.SG', 'Aegean(Roman_era_1-200AD).SG')
- left = c('Montenegro_Doclea_Roman.SG')
- target = c('Croatian.HO')
- results = qpadm(prefix, left, right, target, allsnps = TRUE)
- results$weights
- results$popdrop
- ```
- ```c
- P 0.249
- target left weight se z
- <chr> <chr> <dbl> <dbl> <dbl>
- 1 Croatian.HO Montenegro_Doclea_Roman.SG 1 1.14e-13 8.79e12
- ```
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