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misnomer001

aln009 v2

misnomer001
May 1st, 2021
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  1. qpAdm: parameter file: par
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa.txt
  5. popleft: left1
  6. popright: right1
  7. details: YES
  8. ## qpAdm version: 1201
  9. seed: 1637411328
  10.  
  11. left pops:
  12. ALN009.A0101
  13. Uzbekistan_Bustan_BA
  14. Russia_MLBA_Sintashta
  15. Mongolia_LBA_Khovsgol_6
  16.  
  17. right pops:
  18. Mbuti.DG
  19. Russia_HG_Karelia
  20. Turkey_N
  21. Russia_HG_Tyumen
  22. Mongolia_North_N
  23. Serbia_IronGates_Mesolithic
  24. Iran_GanjDareh_N
  25. Georgia_Kotias.SG
  26. ONG.SG
  27.  
  28. codimension 1
  29. f4info:
  30. f4rank: 2 dof: 6 chisq: 10.415 tail: 0.108224742 dofdiff: 8 chisqdiff: -10.415 taildiff: 1
  31. B:
  32. scale 1.000 1.000
  33. Russia_HG_Karelia 0.404 1.409
  34. Turkey_N 0.967 0.533
  35. Russia_HG_Tyumen -0.100 0.874
  36. Mongolia_North_N -2.095 0.556
  37. Serbia_IronGates_Mesolithic 0.808 1.754
  38. Iran_GanjDareh_N 0.719 -1.220
  39. Georgia_Kotias.SG 0.849 -0.231
  40. ONG.SG -0.784 0.195
  41. A:
  42. scale 227.613 561.720
  43. Uzbekistan_Bustan_BA 0.199 -1.366
  44. Russia_MLBA_Sintashta 0.356 1.039
  45. Mongolia_LBA_Khovsgol_6 -1.683 0.231
  46.  
  47.  
  48. full rank
  49. f4info:
  50. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 6 chisqdiff: 10.415 taildiff: 0.108224742
  51. B:
  52. scale 338.073 457.110 132.886
  53. Russia_HG_Karelia -1.436 0.994 -0.463
  54. Turkey_N -0.160 1.159 -0.918
  55. Russia_HG_Tyumen -1.202 0.114 -0.017
  56. Mongolia_North_N -1.174 -1.123 2.059
  57. Serbia_IronGates_Mesolithic -1.324 1.928 -0.738
  58. Iran_GanjDareh_N 1.053 -0.686 -0.826
  59. Georgia_Kotias.SG 0.183 0.115 -0.939
  60. ONG.SG -0.439 -0.441 0.770
  61. A:
  62. scale 1.732 1.732 1.732
  63. Uzbekistan_Bustan_BA 1.732 0.000 0.000
  64. Russia_MLBA_Sintashta 0.000 1.732 0.000
  65. Mongolia_LBA_Khovsgol_6 0.000 0.000 1.732
  66.  
  67.  
  68. best coefficients: 0.383 0.472 0.145
  69. totmean: 0.383 0.472 0.145
  70. boot mean: 0.383 0.472 0.145
  71. std. errors: 0.030 0.028 0.015
  72.  
  73. error covariance (* 1,000,000)
  74. 884 -732 -152
  75. -732 802 -71
  76. -152 -71 223
  77.  
  78.  
  79. summ: ALN009.A0101 3 0.108225 0.383 0.472 0.145 884 -732 -152 802 -71 ...
  80. 223
  81.  
  82. fixed pat wt dof chisq tail prob
  83. 000 0 6 10.415 0.108225 0.383 0.472 0.145
  84. 001 1 7 98.207 2.52962e-18 0.468 0.532 0.000
  85. 010 1 7 244.419 0 0.809 0.000 0.191
  86. 100 1 7 165.527 0 0.000 0.803 0.197
  87. 011 2 8 370.571 0 1.000 0.000 0.000
  88. 101 2 8 333.918 0 0.000 1.000 0.000
  89. 110 2 8 2520.397 0 0.000 0.000 1.000
  90. best pat: 000 0.108225 - -
  91. best pat: 001 2.52962e-18 chi(nested): 87.792 p-value for nested model: 7.27188e-21
  92. best pat: 101 2.4442e-67 chi(nested): 235.711 p-value for nested model: 3.38783e-53
  93.  
  94. coeffs: 0.383 0.472 0.145
  95.  
  96. ## dscore:: f_4(Base, Fit, Rbase, right2)
  97. ## genstat:: f_4(Base, Fit, right1, right2)
  98.  
  99. details: Uzbekistan_Bustan_BA Russia_HG_Karelia -0.004249 -7.308502
  100. details: Russia_MLBA_Sintashta Russia_HG_Karelia 0.002175 4.038874
  101. details: Mongolia_LBA_Khovsgol_6 Russia_HG_Karelia -0.003482 -6.007021
  102. dscore: Russia_HG_Karelia f4: -0.001108 Z: -2.081586
  103.  
  104. details: Uzbekistan_Bustan_BA Turkey_N -0.000474 -1.262318
  105. details: Russia_MLBA_Sintashta Turkey_N 0.002536 7.088335
  106. details: Mongolia_LBA_Khovsgol_6 Turkey_N -0.006908 -18.267718
  107. dscore: Turkey_N f4: 0.000012 Z: 0.035608
  108.  
  109. details: Uzbekistan_Bustan_BA Russia_HG_Tyumen -0.003554 -5.772950
  110. details: Russia_MLBA_Sintashta Russia_HG_Tyumen 0.000250 0.430651
  111. details: Mongolia_LBA_Khovsgol_6 Russia_HG_Tyumen -0.000129 -0.201710
  112. dscore: Russia_HG_Tyumen f4: -0.001263 Z: -2.211996
  113.  
  114. details: Uzbekistan_Bustan_BA Mongolia_North_N -0.003474 -7.492221
  115. details: Russia_MLBA_Sintashta Mongolia_North_N -0.002456 -5.710084
  116. details: Mongolia_LBA_Khovsgol_6 Mongolia_North_N 0.015496 32.596081
  117. dscore: Mongolia_North_N f4: -0.000242 Z: -0.569920
  118.  
  119. details: Uzbekistan_Bustan_BA Serbia_IronGates_Mesolithic -0.003916 -9.946650
  120. details: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.004217 11.151559
  121. details: Mongolia_LBA_Khovsgol_6 Serbia_IronGates_Mesolithic -0.005553 -12.841237
  122. dscore: Serbia_IronGates_Mesolithic f4: -0.000318 Z: -0.863931
  123.  
  124. details: Uzbekistan_Bustan_BA Iran_GanjDareh_N 0.003115 7.668600
  125. details: Russia_MLBA_Sintashta Iran_GanjDareh_N -0.001501 -4.115806
  126. details: Mongolia_LBA_Khovsgol_6 Iran_GanjDareh_N -0.006219 -15.596315
  127. dscore: Iran_GanjDareh_N f4: -0.000416 Z: -1.153703
  128.  
  129. details: Uzbekistan_Bustan_BA Georgia_Kotias.SG 0.000542 0.939241
  130. details: Russia_MLBA_Sintashta Georgia_Kotias.SG 0.000251 0.466095
  131. details: Mongolia_LBA_Khovsgol_6 Georgia_Kotias.SG -0.007067 -12.358371
  132. dscore: Georgia_Kotias.SG f4: -0.000699 Z: -1.322944
  133.  
  134. details: Uzbekistan_Bustan_BA ONG.SG -0.001298 -2.805872
  135. details: Russia_MLBA_Sintashta ONG.SG -0.000965 -2.280871
  136. details: Mongolia_LBA_Khovsgol_6 ONG.SG 0.005796 12.385294
  137. dscore: ONG.SG f4: -0.000112 Z: -0.264821
  138.  
  139. gendstat: Mbuti.DG Russia_HG_Karelia -2.082
  140. gendstat: Mbuti.DG Turkey_N 0.036
  141. gendstat: Mbuti.DG Russia_HG_Tyumen -2.212
  142. gendstat: Mbuti.DG Mongolia_North_N -0.570
  143. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.864
  144. gendstat: Mbuti.DG Iran_GanjDareh_N -1.154
  145. gendstat: Mbuti.DG Georgia_Kotias.SG -1.323
  146. gendstat: Mbuti.DG ONG.SG -0.265
  147. gendstat: Russia_HG_Karelia Turkey_N 2.194
  148. gendstat: Russia_HG_Karelia Russia_HG_Tyumen -0.259
  149. gendstat: Russia_HG_Karelia Mongolia_North_N 1.522
  150. gendstat: Russia_HG_Karelia Serbia_IronGates_Mesolithic 1.704
  151. gendstat: Russia_HG_Karelia Iran_GanjDareh_N 1.274
  152. gendstat: Russia_HG_Karelia Georgia_Kotias.SG 0.632
  153. gendstat: Russia_HG_Karelia ONG.SG 1.766
  154. gendstat: Turkey_N Russia_HG_Tyumen -2.268
  155. gendstat: Turkey_N Mongolia_North_N -0.592
  156. gendstat: Turkey_N Serbia_IronGates_Mesolithic -1.152
  157. gendstat: Turkey_N Iran_GanjDareh_N -1.300
  158. gendstat: Turkey_N Georgia_Kotias.SG -1.500
  159. gendstat: Turkey_N ONG.SG -0.300
  160. gendstat: Russia_HG_Tyumen Mongolia_North_N 1.775
  161. gendstat: Russia_HG_Tyumen Serbia_IronGates_Mesolithic 1.769
  162. gendstat: Russia_HG_Tyumen Iran_GanjDareh_N 1.487
  163. gendstat: Russia_HG_Tyumen Georgia_Kotias.SG 0.820
  164. gendstat: Russia_HG_Tyumen ONG.SG 1.897
  165. gendstat: Mongolia_North_N Serbia_IronGates_Mesolithic -0.173
  166. gendstat: Mongolia_North_N Iran_GanjDareh_N -0.390
  167. gendstat: Mongolia_North_N Georgia_Kotias.SG -0.779
  168. gendstat: Mongolia_North_N ONG.SG 0.343
  169. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -0.260
  170. gendstat: Serbia_IronGates_Mesolithic Georgia_Kotias.SG -0.751
  171. gendstat: Serbia_IronGates_Mesolithic ONG.SG 0.491
  172. gendstat: Iran_GanjDareh_N Georgia_Kotias.SG -0.584
  173. gendstat: Iran_GanjDareh_N ONG.SG 0.695
  174. gendstat: Georgia_Kotias.SG ONG.SG 1.036
  175.  
  176. ##end of qpAdm: 4.875 seconds cpu 0.725 Mbytes in use
  177.  
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