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misnomer001

steppe eneolithic pass

misnomer001
Jan 27th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1849644427
  4.  
  5. left pops:
  6. Steppe_Eneolithic
  7. Georgia_Kotias.SG
  8. Geoksyur_EN
  9. Russia_Khvalynsk_EN
  10.  
  11. right pops:
  12. Mbuti.DG
  13. USA_WA_Kennewick.SG
  14. Morocco_Iberomaurusian
  15. Kazakhstan_Botai.SG
  16. Ganj_Dareh_N
  17. PPN
  18. Natufian
  19. Iberia_MN
  20. Russia_MA1.SG
  21. Georgia_Satsurblia.SG
  22. Kostenki14.SG
  23. EEHG
  24. WEHG
  25. WSHG
  26. Onge.DG
  27. Russia_Shamanka_EN.SG
  28. Ethiopia_4500BP.SG
  29.  
  30. 0 Steppe_Eneolithic 3
  31. 1 Georgia_Kotias.SG 1
  32. 2 Geoksyur_EN 21
  33. 3 Russia_Khvalynsk_EN 3
  34. 4 Mbuti.DG 5
  35. 5 USA_WA_Kennewick.SG 1
  36. 6 Morocco_Iberomaurusian 6
  37. 7 Kazakhstan_Botai.SG 3
  38. 8 Ganj_Dareh_N 7
  39. 9 PPN 8
  40. 10 Natufian 6
  41. 11 Iberia_MN 4
  42. 12 Russia_MA1.SG 1
  43. 13 Georgia_Satsurblia.SG 1
  44. 14 Kostenki14.SG 1
  45. 15 EEHG 4
  46. 16 WEHG 36
  47. 17 WSHG 3
  48. 18 Onge.DG 2
  49. 19 Russia_Shamanka_EN.SG 10
  50. 20 Ethiopia_4500BP.SG 1
  51. jackknife block size: 0.050
  52. snps: 1150535 indivs: 127
  53. number of blocks for block jackknife: 552
  54. ## ncols: 1150535
  55. coverage: Steppe_Eneolithic 1017729
  56. coverage: Georgia_Kotias.SG 1149097
  57. coverage: Geoksyur_EN 1018577
  58. coverage: Russia_Khvalynsk_EN 758497
  59. coverage: Mbuti.DG 1150376
  60. coverage: USA_WA_Kennewick.SG 640773
  61. coverage: Morocco_Iberomaurusian 1101342
  62. coverage: Kazakhstan_Botai.SG 1149870
  63. coverage: Ganj_Dareh_N 1029695
  64. coverage: PPN 835499
  65. coverage: Natufian 535079
  66. coverage: Iberia_MN 967760
  67. coverage: Russia_MA1.SG 805960
  68. coverage: Georgia_Satsurblia.SG 801311
  69. coverage: Kostenki14.SG 1048972
  70. coverage: EEHG 1029995
  71. coverage: WEHG 1141246
  72. coverage: WSHG 858019
  73. coverage: Onge.DG 1120748
  74. coverage: Russia_Shamanka_EN.SG 1149998
  75. coverage: Ethiopia_4500BP.SG 1149598
  76. dof (jackknife): 467.312
  77. numsnps used: 1150535
  78. codimension 1
  79. f4info:
  80. f4rank: 2 dof: 14 chisq: 21.525 tail: 0.0889144946 dofdiff: 16 chisqdiff: -21.525 taildiff: 1
  81. B:
  82. scale 1.000 1.000
  83. USA_WA_Kennewick.SG 0.591 0.314
  84. Morocco_Iberomaurusian 0.239 0.094
  85. Kazakhstan_Botai.SG 1.717 0.180
  86. Ganj_Dareh_N -0.525 -1.410
  87. PPN 0.010 -0.430
  88. Natufian 0.057 -0.232
  89. Iberia_MN 0.330 0.258
  90. Russia_MA1.SG 1.239 0.130
  91. Georgia_Satsurblia.SG -0.534 3.440
  92. Kostenki14.SG 0.534 0.514
  93. EEHG 2.115 0.761
  94. WEHG 1.485 0.837
  95. WSHG 1.746 0.013
  96. Onge.DG 0.334 0.063
  97. Russia_Shamanka_EN.SG 0.555 0.398
  98. Ethiopia_4500BP.SG 0.048 0.103
  99. A:
  100. scale 330.299 1277.030
  101. Georgia_Kotias.SG -1.221 1.461
  102. Geoksyur_EN -0.964 -0.929
  103. Russia_Khvalynsk_EN 0.760 -0.056
  104.  
  105.  
  106. full rank
  107. f4info:
  108. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 14 chisqdiff: 21.525 taildiff: 0.0889144946
  109. B:
  110. scale 1.000 1.000 1.000
  111. USA_WA_Kennewick.SG 0.594 0.385 0.812
  112. Morocco_Iberomaurusian 0.232 0.065 -1.821
  113. Kazakhstan_Botai.SG 1.713 0.220 0.040
  114. Ganj_Dareh_N -0.560 -1.463 1.284
  115. PPN -0.004 -0.398 1.260
  116. Natufian 0.054 -0.223 -0.040
  117. Iberia_MN 0.322 0.250 0.367
  118. Russia_MA1.SG 1.226 0.170 1.391
  119. Georgia_Satsurblia.SG -0.483 3.396 -0.940
  120. Kostenki14.SG 0.544 0.545 1.357
  121. EEHG 2.126 0.774 -1.757
  122. WEHG 1.495 0.874 -0.741
  123. WSHG 1.742 0.042 0.017
  124. Onge.DG 0.332 0.058 0.196
  125. Russia_Shamanka_EN.SG 0.551 0.394 -0.536
  126. Ethiopia_4500BP.SG 0.048 0.083 0.171
  127. A:
  128. scale 323.241 1297.406 4153.685
  129. Georgia_Kotias.SG -1.252 1.388 -1.066
  130. Geoksyur_EN -0.969 -0.990 -0.717
  131. Russia_Khvalynsk_EN 0.703 -0.307 -1.162
  132.  
  133.  
  134. best coefficients: 0.175 0.240 0.585
  135. Jackknife mean: 0.174661653 0.240023817 0.585314530
  136. std. errors: 0.031 0.034 0.017
  137.  
  138. error covariance (* 1000000)
  139. 969 -908 -61
  140. -908 1125 -217
  141. -61 -217 278
  142.  
  143.  
  144. summ: Steppe_Eneolithic 3 0.088914 0.175 0.240 0.585 969 -908 -61 1125 -217 278
  145.  
  146. fixed pat wt dof chisq tail prob
  147. 000 0 14 21.525 0.0889145 0.175 0.240 0.585
  148. 001 1 15 380.227 0 19.357 -18.357 -0.000 infeasible
  149. 010 1 15 64.904 3.55212e-08 0.372 -0.000 0.628
  150. 100 1 15 56.242 1.10214e-06 0.000 0.398 0.602
  151. 011 2 16 727.619 0 1.000 -0.000 0.000
  152. 101 2 16 1075.988 0 0.000 1.000 0.000
  153. 110 2 16 463.177 0 0.000 0.000 1.000
  154. best pat: 000 0.0889145 - -
  155. best pat: 100 1.10214e-06 chi(nested): 34.717 p-value for nested model: 3.81342e-09
  156. best pat: 110 1.93332e-88 chi(nested): 406.935 p-value for nested model: 1.70754e-90
  157.  
  158. coeffs: 0.175 0.240 0.585
  159.  
  160. ## dscore:: f_4(Base, Fit, Rbase, right2)
  161. ## genstat:: f_4(Base, Fit, right1, right2)
  162.  
  163. details: Georgia_Kotias.SG USA_WA_Kennewick.SG -0.002116 -6.155532
  164. details: Geoksyur_EN USA_WA_Kennewick.SG -0.002318 -9.065515
  165. details: Russia_Khvalynsk_EN USA_WA_Kennewick.SG 0.000966 3.467410
  166. dscore: USA_WA_Kennewick.SG f4: -0.000360 Z: -1.604662
  167.  
  168. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.000362 -0.981243
  169. details: Geoksyur_EN Morocco_Iberomaurusian -0.000539 -2.366102
  170. details: Russia_Khvalynsk_EN Morocco_Iberomaurusian 0.000938 3.450789
  171. dscore: Morocco_Iberomaurusian f4: 0.000357 Z: 1.591152
  172.  
  173. details: Georgia_Kotias.SG Kazakhstan_Botai.SG -0.006430 -15.330341
  174. details: Geoksyur_EN Kazakhstan_Botai.SG -0.005397 -19.076493
  175. details: Russia_Khvalynsk_EN Kazakhstan_Botai.SG 0.003664 11.153976
  176. dscore: Kazakhstan_Botai.SG f4: -0.000274 Z: -1.022173
  177.  
  178. details: Georgia_Kotias.SG Ganj_Dareh_N 0.000260 0.678811
  179. details: Geoksyur_EN Ganj_Dareh_N 0.002483 9.696352
  180. details: Russia_Khvalynsk_EN Ganj_Dareh_N -0.001291 -4.797266
  181. dscore: Ganj_Dareh_N f4: -0.000115 Z: -0.512491
  182.  
  183. details: Georgia_Kotias.SG PPN -0.000707 -2.077116
  184. details: Geoksyur_EN PPN 0.000032 0.136535
  185. details: Russia_Khvalynsk_EN PPN -0.000255 -0.901498
  186. dscore: PPN f4: -0.000266 Z: -1.205819
  187.  
  188. details: Georgia_Kotias.SG Natufian -0.000456 -1.569229
  189. details: Geoksyur_EN Natufian -0.000069 -0.327073
  190. details: Russia_Khvalynsk_EN Natufian 0.000105 0.400213
  191. dscore: Natufian f4: -0.000035 Z: -0.169553
  192.  
  193. details: Georgia_Kotias.SG Iberia_MN -0.001110 -2.991145
  194. details: Geoksyur_EN Iberia_MN -0.001312 -5.511141
  195. details: Russia_Khvalynsk_EN Iberia_MN 0.000525 1.839758
  196. dscore: Iberia_MN f4: -0.000201 Z: -0.875445
  197.  
  198. details: Georgia_Kotias.SG Russia_MA1.SG -0.004959 -10.415833
  199. details: Geoksyur_EN Russia_MA1.SG -0.004161 -13.375585
  200. details: Russia_Khvalynsk_EN Russia_MA1.SG 0.002128 5.942308
  201. dscore: Russia_MA1.SG f4: -0.000620 Z: -2.150081
  202.  
  203. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.005878 11.745370
  204. details: Geoksyur_EN Georgia_Satsurblia.SG -0.001020 -3.602026
  205. details: Russia_Khvalynsk_EN Georgia_Satsurblia.SG -0.001577 -4.836696
  206. dscore: Georgia_Satsurblia.SG f4: -0.000139 Z: -0.538730
  207.  
  208. details: Georgia_Kotias.SG Kostenki14.SG -0.002014 -4.272668
  209. details: Geoksyur_EN Kostenki14.SG -0.002430 -8.361268
  210. details: Russia_Khvalynsk_EN Kostenki14.SG 0.000534 1.533610
  211. dscore: Kostenki14.SG f4: -0.000623 Z: -2.206997
  212.  
  213. details: Georgia_Kotias.SG EEHG -0.006915 -14.269560
  214. details: Geoksyur_EN EEHG -0.006726 -22.039952
  215. details: Russia_Khvalynsk_EN EEHG 0.004964 14.039847
  216. dscore: EEHG f4: 0.000083 Z: 0.282622
  217.  
  218. details: Georgia_Kotias.SG WEHG -0.004702 -12.664290
  219. details: Geoksyur_EN WEHG -0.005099 -21.212925
  220. details: Russia_Khvalynsk_EN WEHG 0.003201 10.735608
  221. dscore: WEHG f4: -0.000172 Z: -0.725319
  222.  
  223. details: Georgia_Kotias.SG WSHG -0.006711 -16.216975
  224. details: Geoksyur_EN WSHG -0.005366 -17.917008
  225. details: Russia_Khvalynsk_EN WSHG 0.003785 10.549376
  226. dscore: WSHG f4: -0.000245 Z: -0.844789
  227.  
  228. details: Georgia_Kotias.SG Onge.DG -0.001374 -3.314031
  229. details: Geoksyur_EN Onge.DG -0.001210 -4.642642
  230. details: Russia_Khvalynsk_EN Onge.DG 0.000577 1.957534
  231. dscore: Onge.DG f4: -0.000193 Z: -0.778203
  232.  
  233. details: Georgia_Kotias.SG Russia_Shamanka_EN.SG -0.001689 -4.760007
  234. details: Geoksyur_EN Russia_Shamanka_EN.SG -0.002006 -8.269199
  235. details: Russia_Khvalynsk_EN Russia_Shamanka_EN.SG 0.001171 4.320577
  236. dscore: Russia_Shamanka_EN.SG f4: -0.000091 Z: -0.417289
  237.  
  238. details: Georgia_Kotias.SG Ethiopia_4500BP.SG -0.000119 -0.370274
  239. details: Geoksyur_EN Ethiopia_4500BP.SG -0.000253 -1.250096
  240. details: Russia_Khvalynsk_EN Ethiopia_4500BP.SG 0.000030 0.124499
  241. dscore: Ethiopia_4500BP.SG f4: -0.000064 Z: -0.325234
  242.  
  243. gendstat: Mbuti.DG USA_WA_Kennewick.SG -1.605
  244. gendstat: Mbuti.DG Morocco_Iberomaurusian 1.591
  245. gendstat: Mbuti.DG Kazakhstan_Botai.SG -1.022
  246. gendstat: Mbuti.DG Ganj_Dareh_N -0.512
  247. gendstat: Mbuti.DG PPN -1.206
  248. gendstat: Mbuti.DG Natufian -0.170
  249. gendstat: Mbuti.DG Iberia_MN -0.875
  250. gendstat: Mbuti.DG Russia_MA1.SG -2.150
  251. gendstat: Mbuti.DG Georgia_Satsurblia.SG -0.539
  252. gendstat: Mbuti.DG Kostenki14.SG -2.207
  253. gendstat: Mbuti.DG EEHG 0.283
  254. gendstat: Mbuti.DG WEHG -0.725
  255. gendstat: Mbuti.DG WSHG -0.845
  256. gendstat: Mbuti.DG Onge.DG -0.778
  257. gendstat: Mbuti.DG Russia_Shamanka_EN.SG -0.417
  258. gendstat: Mbuti.DG Ethiopia_4500BP.SG -0.325
  259. gendstat: USA_WA_Kennewick.SG Morocco_Iberomaurusian 2.603
  260. gendstat: USA_WA_Kennewick.SG Kazakhstan_Botai.SG 0.340
  261. gendstat: USA_WA_Kennewick.SG Ganj_Dareh_N 0.889
  262. gendstat: USA_WA_Kennewick.SG PPN 0.356
  263. gendstat: USA_WA_Kennewick.SG Natufian 1.188
  264. gendstat: USA_WA_Kennewick.SG Iberia_MN 0.566
  265. gendstat: USA_WA_Kennewick.SG Russia_MA1.SG -0.878
  266. gendstat: USA_WA_Kennewick.SG Georgia_Satsurblia.SG 0.706
  267. gendstat: USA_WA_Kennewick.SG Kostenki14.SG -0.889
  268. gendstat: USA_WA_Kennewick.SG EEHG 1.496
  269. gendstat: USA_WA_Kennewick.SG WEHG 0.708
  270. gendstat: USA_WA_Kennewick.SG WSHG 0.403
  271. gendstat: USA_WA_Kennewick.SG Onge.DG 0.581
  272. gendstat: USA_WA_Kennewick.SG Russia_Shamanka_EN.SG 1.229
  273. gendstat: USA_WA_Kennewick.SG Ethiopia_4500BP.SG 1.054
  274. gendstat: Morocco_Iberomaurusian Kazakhstan_Botai.SG -2.217
  275. gendstat: Morocco_Iberomaurusian Ganj_Dareh_N -1.838
  276. gendstat: Morocco_Iberomaurusian PPN -2.657
  277. gendstat: Morocco_Iberomaurusian Natufian -1.606
  278. gendstat: Morocco_Iberomaurusian Iberia_MN -2.306
  279. gendstat: Morocco_Iberomaurusian Russia_MA1.SG -3.082
  280. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG -1.629
  281. gendstat: Morocco_Iberomaurusian Kostenki14.SG -3.249
  282. gendstat: Morocco_Iberomaurusian EEHG -0.861
  283. gendstat: Morocco_Iberomaurusian WEHG -2.126
  284. gendstat: Morocco_Iberomaurusian WSHG -1.990
  285. gendstat: Morocco_Iberomaurusian Onge.DG -1.986
  286. gendstat: Morocco_Iberomaurusian Russia_Shamanka_EN.SG -1.922
  287. gendstat: Morocco_Iberomaurusian Ethiopia_4500BP.SG -1.612
  288. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N 0.573
  289. gendstat: Kazakhstan_Botai.SG PPN 0.031
  290. gendstat: Kazakhstan_Botai.SG Natufian 0.801
  291. gendstat: Kazakhstan_Botai.SG Iberia_MN 0.271
  292. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -1.285
  293. gendstat: Kazakhstan_Botai.SG Georgia_Satsurblia.SG 0.420
  294. gendstat: Kazakhstan_Botai.SG Kostenki14.SG -1.142
  295. gendstat: Kazakhstan_Botai.SG EEHG 1.433
  296. gendstat: Kazakhstan_Botai.SG WEHG 0.426
  297. gendstat: Kazakhstan_Botai.SG WSHG 0.133
  298. gendstat: Kazakhstan_Botai.SG Onge.DG 0.280
  299. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG 0.806
  300. gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG 0.659
  301. gendstat: Ganj_Dareh_N PPN -0.630
  302. gendstat: Ganj_Dareh_N Natufian 0.312
  303. gendstat: Ganj_Dareh_N Iberia_MN -0.341
  304. gendstat: Ganj_Dareh_N Russia_MA1.SG -1.661
  305. gendstat: Ganj_Dareh_N Georgia_Satsurblia.SG -0.085
  306. gendstat: Ganj_Dareh_N Kostenki14.SG -1.738
  307. gendstat: Ganj_Dareh_N EEHG 0.638
  308. gendstat: Ganj_Dareh_N WEHG -0.219
  309. gendstat: Ganj_Dareh_N WSHG -0.423
  310. gendstat: Ganj_Dareh_N Onge.DG -0.300
  311. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG 0.103
  312. gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG 0.189
  313. gendstat: PPN Natufian 1.013
  314. gendstat: PPN Iberia_MN 0.291
  315. gendstat: PPN Russia_MA1.SG -1.177
  316. gendstat: PPN Georgia_Satsurblia.SG 0.431
  317. gendstat: PPN Kostenki14.SG -1.258
  318. gendstat: PPN EEHG 1.212
  319. gendstat: PPN WEHG 0.427
  320. gendstat: PPN WSHG 0.068
  321. gendstat: PPN Onge.DG 0.278
  322. gendstat: PPN Russia_Shamanka_EN.SG 0.732
  323. gendstat: PPN Ethiopia_4500BP.SG 0.786
  324. gendstat: Natufian Iberia_MN -0.684
  325. gendstat: Natufian Russia_MA1.SG -1.832
  326. gendstat: Natufian Georgia_Satsurblia.SG -0.333
  327. gendstat: Natufian Kostenki14.SG -1.986
  328. gendstat: Natufian EEHG 0.370
  329. gendstat: Natufian WEHG -0.559
  330. gendstat: Natufian WSHG -0.648
  331. gendstat: Natufian Onge.DG -0.578
  332. gendstat: Natufian Russia_Shamanka_EN.SG -0.230
  333. gendstat: Natufian Ethiopia_4500BP.SG -0.108
  334. gendstat: Iberia_MN Russia_MA1.SG -1.364
  335. gendstat: Iberia_MN Georgia_Satsurblia.SG 0.206
  336. gendstat: Iberia_MN Kostenki14.SG -1.484
  337. gendstat: Iberia_MN EEHG 0.941
  338. gendstat: Iberia_MN WEHG 0.143
  339. gendstat: Iberia_MN WSHG -0.147
  340. gendstat: Iberia_MN Onge.DG 0.031
  341. gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.462
  342. gendstat: Iberia_MN Ethiopia_4500BP.SG 0.527
  343. gendstat: Russia_MA1.SG Georgia_Satsurblia.SG 1.377
  344. gendstat: Russia_MA1.SG Kostenki14.SG -0.008
  345. gendstat: Russia_MA1.SG EEHG 2.340
  346. gendstat: Russia_MA1.SG WEHG 1.584
  347. gendstat: Russia_MA1.SG WSHG 1.331
  348. gendstat: Russia_MA1.SG Onge.DG 1.320
  349. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 1.894
  350. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 1.689
  351. gendstat: Georgia_Satsurblia.SG Kostenki14.SG -1.411
  352. gendstat: Georgia_Satsurblia.SG EEHG 0.621
  353. gendstat: Georgia_Satsurblia.SG WEHG -0.108
  354. gendstat: Georgia_Satsurblia.SG WSHG -0.307
  355. gendstat: Georgia_Satsurblia.SG Onge.DG -0.166
  356. gendstat: Georgia_Satsurblia.SG Russia_Shamanka_EN.SG 0.164
  357. gendstat: Georgia_Satsurblia.SG Ethiopia_4500BP.SG 0.249
  358. gendstat: Kostenki14.SG EEHG 2.070
  359. gendstat: Kostenki14.SG WEHG 1.687
  360. gendstat: Kostenki14.SG WSHG 1.145
  361. gendstat: Kostenki14.SG Onge.DG 1.389
  362. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG 2.007
  363. gendstat: Kostenki14.SG Ethiopia_4500BP.SG 1.744
  364. gendstat: EEHG WEHG -1.027
  365. gendstat: EEHG WSHG -1.185
  366. gendstat: EEHG Onge.DG -0.832
  367. gendstat: EEHG Russia_Shamanka_EN.SG -0.634
  368. gendstat: EEHG Ethiopia_4500BP.SG -0.442
  369. gendstat: WEHG WSHG -0.276
  370. gendstat: WEHG Onge.DG -0.076
  371. gendstat: WEHG Russia_Shamanka_EN.SG 0.355
  372. gendstat: WEHG Ethiopia_4500BP.SG 0.402
  373. gendstat: WSHG Onge.DG 0.165
  374. gendstat: WSHG Russia_Shamanka_EN.SG 0.587
  375. gendstat: WSHG Ethiopia_4500BP.SG 0.555
  376. gendstat: Onge.DG Russia_Shamanka_EN.SG 0.469
  377. gendstat: Onge.DG Ethiopia_4500BP.SG 0.454
  378. gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG 0.107
  379.  
  380. ## end of run
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