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misnomer001

saidu sharif = swat_inpe+saka outlier success

misnomer001
Jan 14th, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 810
  3. seed: 1642275283
  4.  
  5. left pops:
  6. Saidu_Sharif_H
  7. Swat_InPe
  8. Saka_Outlier
  9.  
  10. right pops:
  11. Kazakhstan_Botai.SG
  12. Ganj_Dareh_N
  13. PPN
  14. Anatolia_N
  15. Iberia_MN
  16. Russia_MA1.SG
  17. CHG
  18. Kostenki14.SG
  19. EEHG
  20. WEHG
  21. WSHG
  22. Onge.DG
  23. Russia_Shamanka_EN.SG
  24. Ethiopia_4500BP.SG
  25.  
  26. 0 Saidu_Sharif_H 10
  27. 1 Swat_InPe 8
  28. 2 Saka_Outlier 3
  29. 3 Kazakhstan_Botai.SG 3
  30. 4 Ganj_Dareh_N 7
  31. 5 PPN 8
  32. 6 Anatolia_N 22
  33. 7 Iberia_MN 4
  34. 8 Russia_MA1.SG 1
  35. 9 CHG 2
  36. 10 Kostenki14.SG 1
  37. 11 EEHG 4
  38. 12 WEHG 36
  39. 13 WSHG 3
  40. 14 Onge.DG 2
  41. 15 Russia_Shamanka_EN.SG 10
  42. 16 Ethiopia_4500BP.SG 1
  43. jackknife block size: 0.050
  44. snps: 1150477 indivs: 125
  45. number of blocks for block jackknife: 552
  46. ## ncols: 1150477
  47. coverage: Saidu_Sharif_H 1107970
  48. coverage: Swat_InPe 1019932
  49. coverage: Saka_Outlier 648177
  50. coverage: Kazakhstan_Botai.SG 1149870
  51. coverage: Ganj_Dareh_N 1029695
  52. coverage: PPN 835499
  53. coverage: Anatolia_N 1134099
  54. coverage: Iberia_MN 967760
  55. coverage: Russia_MA1.SG 805960
  56. coverage: CHG 1149558
  57. coverage: Kostenki14.SG 1048972
  58. coverage: EEHG 1029995
  59. coverage: WEHG 1141246
  60. coverage: WSHG 858019
  61. coverage: Onge.DG 1120748
  62. coverage: Russia_Shamanka_EN.SG 1149998
  63. coverage: Ethiopia_4500BP.SG 1149598
  64. dof (jackknife): 470.724
  65. numsnps used: 1150477
  66. codimension 1
  67. f4info:
  68. f4rank: 1 dof: 12 chisq: 16.329 tail: 0.176633366 dofdiff: 14 chisqdiff: -16.329 taildiff: 1
  69. B:
  70. scale 1.000
  71. Ganj_Dareh_N 1.477
  72. PPN 0.281
  73. Anatolia_N -0.069
  74. Iberia_MN -0.187
  75. Russia_MA1.SG 0.138
  76. CHG 0.060
  77. Kostenki14.SG 0.714
  78. EEHG -0.645
  79. WEHG -0.842
  80. WSHG 0.103
  81. Onge.DG 2.281
  82. Russia_Shamanka_EN.SG 1.389
  83. Ethiopia_4500BP.SG 1.378
  84. A:
  85. scale 1114.399
  86. Swat_InPe 0.608
  87. Saka_Outlier -1.277
  88.  
  89.  
  90. full rank
  91. f4info:
  92. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 16.329 taildiff: 0.176633366
  93. B:
  94. scale 1.000 1.000
  95. Ganj_Dareh_N 1.491 -0.417
  96. PPN 0.330 0.546
  97. Anatolia_N -0.018 1.265
  98. Iberia_MN -0.155 1.041
  99. Russia_MA1.SG 0.181 0.831
  100. CHG 0.071 -0.794
  101. Kostenki14.SG 0.703 -0.449
  102. EEHG -0.616 -0.413
  103. WEHG -0.776 1.705
  104. WSHG 0.129 0.305
  105. Onge.DG 2.296 0.762
  106. Russia_Shamanka_EN.SG 1.403 -0.393
  107. Ethiopia_4500BP.SG 1.369 -2.101
  108. A:
  109. scale 1086.485 7506.912
  110. Swat_InPe 0.499 -1.138
  111. Saka_Outlier -1.323 -0.840
  112.  
  113.  
  114. best coefficients: 0.678 0.322
  115. Jackknife mean: 0.677503571 0.322496429
  116. std. errors: 0.025 0.025
  117.  
  118. error covariance (* 1000000)
  119. 645 -645
  120. -645 645
  121.  
  122.  
  123. summ: Saidu_Sharif_H 2 0.176633 0.678 0.322 645 -645 645
  124.  
  125. fixed pat wt dof chisq tail prob
  126. 00 0 12 16.329 0.176633 0.678 0.322
  127. 01 1 13 136.083 1.27947e-22 1.000 -0.000
  128. 10 1 13 385.520 0 0.000 1.000
  129. best pat: 00 0.176633 - -
  130. best pat: 01 1.27947e-22 chi(nested): 119.754 p-value for nested model: 7.16124e-28
  131.  
  132. coeffs: 0.678 0.322
  133.  
  134. ## dscore:: f_4(Base, Fit, Rbase, right2)
  135. ## genstat:: f_4(Base, Fit, right1, right2)
  136.  
  137. details: Swat_InPe Ganj_Dareh_N 0.000744 3.996490
  138. details: Saka_Outlier Ganj_Dareh_N -0.001783 -8.660073
  139. dscore: Ganj_Dareh_N f4: -0.000071 Z: -0.452176
  140.  
  141. details: Swat_InPe PPN 0.000058 0.311613
  142. details: Saka_Outlier PPN -0.000485 -2.190355
  143. dscore: PPN f4: -0.000117 Z: -0.753529
  144.  
  145. details: Swat_InPe Anatolia_N -0.000204 -1.295950
  146. details: Saka_Outlier Anatolia_N -0.000137 -0.655253
  147. dscore: Anatolia_N f4: -0.000182 Z: -1.349869
  148.  
  149. details: Swat_InPe Iberia_MN -0.000240 -1.389483
  150. details: Saka_Outlier Iberia_MN 0.000054 0.247927
  151. dscore: Iberia_MN f4: -0.000145 Z: -1.016739
  152.  
  153. details: Swat_InPe Russia_MA1.SG -0.000054 -0.268235
  154. details: Saka_Outlier Russia_MA1.SG -0.000329 -1.421131
  155. dscore: Russia_MA1.SG f4: -0.000142 Z: -0.848324
  156.  
  157. details: Swat_InPe CHG 0.000147 0.721465
  158. details: Saka_Outlier CHG -0.000011 -0.050090
  159. dscore: CHG f4: 0.000096 Z: 0.579409
  160.  
  161. details: Swat_InPe Kostenki14.SG 0.000382 1.780265
  162. details: Saka_Outlier Kostenki14.SG -0.000819 -3.219199
  163. dscore: Kostenki14.SG f4: -0.000005 Z: -0.026275
  164.  
  165. details: Swat_InPe EEHG -0.000227 -1.415109
  166. details: Saka_Outlier EEHG 0.000780 4.002803
  167. dscore: EEHG f4: 0.000098 Z: 0.730163
  168.  
  169. details: Swat_InPe WEHG -0.000620 -4.029691
  170. details: Saka_Outlier WEHG 0.000739 3.711227
  171. dscore: WEHG f4: -0.000182 Z: -1.349598
  172.  
  173. details: Swat_InPe WSHG 0.000005 0.032527
  174. details: Saka_Outlier WSHG -0.000204 -1.116974
  175. dscore: WSHG f4: -0.000062 Z: -0.493493
  176.  
  177. details: Swat_InPe Onge.DG 0.000937 4.718046
  178. details: Saka_Outlier Onge.DG -0.002898 -12.193852
  179. dscore: Onge.DG f4: -0.000299 Z: -1.776305
  180.  
  181. details: Swat_InPe Russia_Shamanka_EN.SG 0.000697 4.201263
  182. details: Saka_Outlier Russia_Shamanka_EN.SG -0.001684 -8.323021
  183. dscore: Russia_Shamanka_EN.SG f4: -0.000071 Z: -0.490879
  184.  
  185. details: Swat_InPe Ethiopia_4500BP.SG 0.000949 4.446499
  186. details: Saka_Outlier Ethiopia_4500BP.SG -0.001450 -6.001589
  187. dscore: Ethiopia_4500BP.SG f4: 0.000176 Z: 0.992629
  188.  
  189. gendstat: Kazakhstan_Botai.SG Ganj_Dareh_N -0.452
  190. gendstat: Kazakhstan_Botai.SG PPN -0.754
  191. gendstat: Kazakhstan_Botai.SG Anatolia_N -1.350
  192. gendstat: Kazakhstan_Botai.SG Iberia_MN -1.017
  193. gendstat: Kazakhstan_Botai.SG Russia_MA1.SG -0.848
  194. gendstat: Kazakhstan_Botai.SG CHG 0.579
  195. gendstat: Kazakhstan_Botai.SG Kostenki14.SG -0.026
  196. gendstat: Kazakhstan_Botai.SG EEHG 0.730
  197. gendstat: Kazakhstan_Botai.SG WEHG -1.350
  198. gendstat: Kazakhstan_Botai.SG WSHG -0.493
  199. gendstat: Kazakhstan_Botai.SG Onge.DG -1.776
  200. gendstat: Kazakhstan_Botai.SG Russia_Shamanka_EN.SG -0.491
  201. gendstat: Kazakhstan_Botai.SG Ethiopia_4500BP.SG 0.993
  202. gendstat: Ganj_Dareh_N PPN -0.298
  203. gendstat: Ganj_Dareh_N Anatolia_N -0.841
  204. gendstat: Ganj_Dareh_N Iberia_MN -0.486
  205. gendstat: Ganj_Dareh_N Russia_MA1.SG -0.373
  206. gendstat: Ganj_Dareh_N CHG 1.063
  207. gendstat: Ganj_Dareh_N Kostenki14.SG 0.350
  208. gendstat: Ganj_Dareh_N EEHG 1.009
  209. gendstat: Ganj_Dareh_N WEHG -0.712
  210. gendstat: Ganj_Dareh_N WSHG 0.048
  211. gendstat: Ganj_Dareh_N Onge.DG -1.302
  212. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.002
  213. gendstat: Ganj_Dareh_N Ethiopia_4500BP.SG 1.405
  214. gendstat: PPN Anatolia_N -0.564
  215. gendstat: PPN Iberia_MN -0.198
  216. gendstat: PPN Russia_MA1.SG -0.129
  217. gendstat: PPN CHG 1.252
  218. gendstat: PPN Kostenki14.SG 0.592
  219. gendstat: PPN EEHG 1.236
  220. gendstat: PPN WEHG -0.436
  221. gendstat: PPN WSHG 0.319
  222. gendstat: PPN Onge.DG -1.037
  223. gendstat: PPN Russia_Shamanka_EN.SG 0.280
  224. gendstat: PPN Ethiopia_4500BP.SG 1.685
  225. gendstat: Anatolia_N Iberia_MN 0.349
  226. gendstat: Anatolia_N Russia_MA1.SG 0.223
  227. gendstat: Anatolia_N CHG 1.961
  228. gendstat: Anatolia_N Kostenki14.SG 1.088
  229. gendstat: Anatolia_N EEHG 1.901
  230. gendstat: Anatolia_N WEHG 0.006
  231. gendstat: Anatolia_N WSHG 0.793
  232. gendstat: Anatolia_N Onge.DG -0.773
  233. gendstat: Anatolia_N Russia_Shamanka_EN.SG 0.821
  234. gendstat: Anatolia_N Ethiopia_4500BP.SG 2.420
  235. gendstat: Iberia_MN Russia_MA1.SG 0.015
  236. gendstat: Iberia_MN CHG 1.498
  237. gendstat: Iberia_MN Kostenki14.SG 0.812
  238. gendstat: Iberia_MN EEHG 1.493
  239. gendstat: Iberia_MN WEHG -0.308
  240. gendstat: Iberia_MN WSHG 0.508
  241. gendstat: Iberia_MN Onge.DG -0.901
  242. gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.495
  243. gendstat: Iberia_MN Ethiopia_4500BP.SG 1.916
  244. gendstat: Russia_MA1.SG CHG 1.182
  245. gendstat: Russia_MA1.SG Kostenki14.SG 0.649
  246. gendstat: Russia_MA1.SG EEHG 1.305
  247. gendstat: Russia_MA1.SG WEHG -0.219
  248. gendstat: Russia_MA1.SG WSHG 0.449
  249. gendstat: Russia_MA1.SG Onge.DG -0.744
  250. gendstat: Russia_MA1.SG Russia_Shamanka_EN.SG 0.383
  251. gendstat: Russia_MA1.SG Ethiopia_4500BP.SG 1.512
  252. gendstat: CHG Kostenki14.SG -0.509
  253. gendstat: CHG EEHG 0.008
  254. gendstat: CHG WEHG -1.678
  255. gendstat: CHG WSHG -0.892
  256. gendstat: CHG Onge.DG -2.124
  257. gendstat: CHG Russia_Shamanka_EN.SG -0.932
  258. gendstat: CHG Ethiopia_4500BP.SG 0.430
  259. gendstat: Kostenki14.SG EEHG 0.524
  260. gendstat: Kostenki14.SG WEHG -1.012
  261. gendstat: Kostenki14.SG WSHG -0.293
  262. gendstat: Kostenki14.SG Onge.DG -1.504
  263. gendstat: Kostenki14.SG Russia_Shamanka_EN.SG -0.361
  264. gendstat: Kostenki14.SG Ethiopia_4500BP.SG 0.936
  265. gendstat: EEHG WEHG -1.928
  266. gendstat: EEHG WSHG -1.041
  267. gendstat: EEHG Onge.DG -2.104
  268. gendstat: EEHG Russia_Shamanka_EN.SG -0.967
  269. gendstat: EEHG Ethiopia_4500BP.SG 0.413
  270. gendstat: WEHG WSHG 0.769
  271. gendstat: WEHG Onge.DG -0.683
  272. gendstat: WEHG Russia_Shamanka_EN.SG 0.803
  273. gendstat: WEHG Ethiopia_4500BP.SG 2.228
  274. gendstat: WSHG Onge.DG -1.249
  275. gendstat: WSHG Russia_Shamanka_EN.SG -0.051
  276. gendstat: WSHG Ethiopia_4500BP.SG 1.183
  277. gendstat: Onge.DG Russia_Shamanka_EN.SG 1.458
  278. gendstat: Onge.DG Ethiopia_4500BP.SG 2.629
  279. gendstat: Russia_Shamanka_EN.SG Ethiopia_4500BP.SG 1.492
  280.  
  281. ## end of run
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