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misnomer001

armenia_lba = zevakinsikiy + kuraaraxes success

misnomer001
Jan 21st, 2020
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  1. qpAdm: parameter file: /home/ash/Downloads/results/armeniamba/qpAdm__377270791.par
  2. ### THE INPUT PARAMETERS
  3. allsnps: YES
  4. ## qpAdm version: 810
  5. seed: 1761934570
  6.  
  7. left pops:
  8. Armenia_LBA.SG
  9. Caucasus_Kura_Araxes
  10. Zevakinskiy_BA
  11.  
  12. right pops:
  13. Sarazm_EN
  14. Ganj_Dareh_N
  15. PPN
  16. Anatolia_N
  17. Iberia_MN
  18. CHG
  19. EEHG
  20. WEHG
  21. WSHG
  22. Onge.DG
  23. Russia_Shamanka_EN.SG
  24. Steppe_Eneolithic
  25. Caucasus_Eneolithic
  26. Kazakhstan_Botai.SG
  27.  
  28. 0 Armenia_LBA.SG 5
  29. 1 Caucasus_Kura_Araxes 4
  30. 2 Zevakinskiy_BA 1
  31. 3 Sarazm_EN 2
  32. 4 Ganj_Dareh_N 7
  33. 5 PPN 8
  34. 6 Anatolia_N 22
  35. 7 Iberia_MN 4
  36. 8 CHG 2
  37. 9 EEHG 4
  38. 10 WEHG 36
  39. 11 WSHG 3
  40. 12 Onge.DG 2
  41. 13 Russia_Shamanka_EN.SG 10
  42. 14 Steppe_Eneolithic 3
  43. 15 Caucasus_Eneolithic 3
  44. 16 Kazakhstan_Botai.SG 3
  45. jackknife block size: 0.050
  46. snps: 1150475 indivs: 119
  47. number of blocks for block jackknife: 552
  48. ## ncols: 1150475
  49. coverage: Armenia_LBA.SG 543198
  50. coverage: Caucasus_Kura_Araxes 967288
  51. coverage: Zevakinskiy_BA 607127
  52. coverage: Sarazm_EN 867960
  53. coverage: Ganj_Dareh_N 1029695
  54. coverage: PPN 835499
  55. coverage: Anatolia_N 1134099
  56. coverage: Iberia_MN 967760
  57. coverage: CHG 1149558
  58. coverage: EEHG 1029995
  59. coverage: WEHG 1141246
  60. coverage: WSHG 858019
  61. coverage: Onge.DG 1120748
  62. coverage: Russia_Shamanka_EN.SG 1149998
  63. coverage: Steppe_Eneolithic 1017729
  64. coverage: Caucasus_Eneolithic 784983
  65. coverage: Kazakhstan_Botai.SG 1149870
  66. dof (jackknife): 461.314
  67. numsnps used: 1150475
  68. codimension 1
  69. f4info:
  70. f4rank: 1 dof: 12 chisq: 9.142 tail: 0.690784141 dofdiff: 14 chisqdiff: -9.142 taildiff: 1
  71. B:
  72. scale 1.000
  73. Ganj_Dareh_N 0.011
  74. PPN 0.056
  75. Anatolia_N 0.179
  76. Iberia_MN 0.424
  77. CHG -0.129
  78. EEHG 1.513
  79. WEHG 1.788
  80. WSHG 1.480
  81. Onge.DG 0.611
  82. Russia_Shamanka_EN.SG 1.239
  83. Steppe_Eneolithic 0.888
  84. Caucasus_Eneolithic -0.104
  85. Kazakhstan_Botai.SG 1.544
  86. A:
  87. scale 872.993
  88. Caucasus_Kura_Araxes -0.506
  89. Zevakinskiy_BA 1.321
  90.  
  91.  
  92. full rank
  93. f4info:
  94. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 9.142 taildiff: 0.690784141
  95. B:
  96. scale 1.000 1.000
  97. Ganj_Dareh_N 0.025 0.497
  98. PPN 0.056 -1.299
  99. Anatolia_N 0.184 -0.277
  100. Iberia_MN 0.436 1.448
  101. CHG -0.128 1.900
  102. EEHG 1.510 -0.478
  103. WEHG 1.798 -0.979
  104. WSHG 1.482 -0.161
  105. Onge.DG 0.615 0.217
  106. Russia_Shamanka_EN.SG 1.231 0.662
  107. Steppe_Eneolithic 0.886 -1.542
  108. Caucasus_Eneolithic -0.096 -0.224
  109. Kazakhstan_Botai.SG 1.535 1.074
  110. A:
  111. scale 876.778 10393.109
  112. Caucasus_Kura_Araxes -0.542 -1.083
  113. Zevakinskiy_BA 1.306 -0.910
  114.  
  115.  
  116. best coefficients: 0.723 0.277
  117. Jackknife mean: 0.722864909 0.277135091
  118. std. errors: 0.031 0.031
  119.  
  120. error covariance (* 1000000)
  121. 938 -938
  122. -938 938
  123.  
  124.  
  125. summ: Armenia_LBA.SG 2 0.690784 0.723 0.277 938 -938 938
  126.  
  127. fixed pat wt dof chisq tail prob
  128. 00 0 12 9.142 0.690784 0.723 0.277
  129. 01 1 13 76.055 6.05267e-11 1.000 0.000
  130. 10 1 13 257.654 0 0.000 1.000
  131. best pat: 00 0.690784 - -
  132. best pat: 01 6.05267e-11 chi(nested): 66.913 p-value for nested model: 2.83728e-16
  133.  
  134. coeffs: 0.723 0.277
  135.  
  136. ## dscore:: f_4(Base, Fit, Rbase, right2)
  137. ## genstat:: f_4(Base, Fit, right1, right2)
  138.  
  139. details: Caucasus_Kura_Araxes Ganj_Dareh_N -0.000099 -0.444208
  140. details: Zevakinskiy_BA Ganj_Dareh_N 0.000011 0.044248
  141. dscore: Ganj_Dareh_N f4: -0.000069 Z: -0.351059
  142.  
  143. details: Caucasus_Kura_Araxes PPN 0.000088 0.347520
  144. details: Zevakinskiy_BA PPN 0.000222 0.785119
  145. dscore: PPN f4: 0.000125 Z: 0.552790
  146.  
  147. details: Caucasus_Kura_Araxes Anatolia_N -0.000114 -0.468843
  148. details: Zevakinskiy_BA Anatolia_N 0.000323 1.077559
  149. dscore: Anatolia_N f4: 0.000007 Z: 0.032536
  150.  
  151. details: Caucasus_Kura_Araxes Iberia_MN -0.000441 -1.875854
  152. details: Zevakinskiy_BA Iberia_MN 0.000551 1.960585
  153. dscore: Iberia_MN f4: -0.000166 Z: -0.798749
  154.  
  155. details: Caucasus_Kura_Araxes CHG -0.000157 -0.673461
  156. details: Zevakinskiy_BA CHG -0.000354 -1.352095
  157. dscore: CHG f4: -0.000212 Z: -1.018590
  158.  
  159. details: Caucasus_Kura_Araxes EEHG -0.000901 -3.626438
  160. details: Zevakinskiy_BA EEHG 0.002310 8.432812
  161. dscore: EEHG f4: -0.000012 Z: -0.054285
  162.  
  163. details: Caucasus_Kura_Araxes WEHG -0.001046 -4.136564
  164. details: Zevakinskiy_BA WEHG 0.002785 8.578790
  165. dscore: WEHG f4: 0.000015 Z: 0.066658
  166.  
  167. details: Caucasus_Kura_Araxes WSHG -0.000917 -3.712844
  168. details: Zevakinskiy_BA WSHG 0.002243 7.579672
  169. dscore: WSHG f4: -0.000042 Z: -0.189079
  170.  
  171. details: Caucasus_Kura_Araxes Onge.DG -0.000430 -1.791792
  172. details: Zevakinskiy_BA Onge.DG 0.000912 3.160874
  173. dscore: Onge.DG f4: -0.000058 Z: -0.270813
  174.  
  175. details: Caucasus_Kura_Araxes Russia_Shamanka_EN.SG -0.000858 -3.448920
  176. details: Zevakinskiy_BA Russia_Shamanka_EN.SG 0.001792 6.014648
  177. dscore: Russia_Shamanka_EN.SG f4: -0.000124 Z: -0.560626
  178.  
  179. details: Caucasus_Kura_Araxes Steppe_Eneolithic -0.000414 -1.772929
  180. details: Zevakinskiy_BA Steppe_Eneolithic 0.001470 5.699514
  181. dscore: Steppe_Eneolithic f4: 0.000107 Z: 0.523378
  182.  
  183. details: Caucasus_Kura_Araxes Caucasus_Eneolithic 0.000051 0.211548
  184. details: Zevakinskiy_BA Caucasus_Eneolithic -0.000108 -0.365192
  185. dscore: Caucasus_Eneolithic f4: 0.000007 Z: 0.033926
  186.  
  187. details: Caucasus_Kura_Araxes Kazakhstan_Botai.SG -0.001074 -4.625261
  188. details: Zevakinskiy_BA Kazakhstan_Botai.SG 0.002213 8.139937
  189. dscore: Kazakhstan_Botai.SG f4: -0.000164 Z: -0.795535
  190.  
  191. gendstat: Sarazm_EN Ganj_Dareh_N -0.351
  192. gendstat: Sarazm_EN PPN 0.553
  193. gendstat: Sarazm_EN Anatolia_N 0.033
  194. gendstat: Sarazm_EN Iberia_MN -0.799
  195. gendstat: Sarazm_EN CHG -1.019
  196. gendstat: Sarazm_EN EEHG -0.054
  197. gendstat: Sarazm_EN WEHG 0.067
  198. gendstat: Sarazm_EN WSHG -0.189
  199. gendstat: Sarazm_EN Onge.DG -0.271
  200. gendstat: Sarazm_EN Russia_Shamanka_EN.SG -0.561
  201. gendstat: Sarazm_EN Steppe_Eneolithic 0.523
  202. gendstat: Sarazm_EN Caucasus_Eneolithic 0.034
  203. gendstat: Sarazm_EN Kazakhstan_Botai.SG -0.796
  204. gendstat: Ganj_Dareh_N PPN 0.955
  205. gendstat: Ganj_Dareh_N Anatolia_N 0.438
  206. gendstat: Ganj_Dareh_N Iberia_MN -0.542
  207. gendstat: Ganj_Dareh_N CHG -0.748
  208. gendstat: Ganj_Dareh_N EEHG 0.284
  209. gendstat: Ganj_Dareh_N WEHG 0.471
  210. gendstat: Ganj_Dareh_N WSHG 0.127
  211. gendstat: Ganj_Dareh_N Onge.DG 0.054
  212. gendstat: Ganj_Dareh_N Russia_Shamanka_EN.SG -0.298
  213. gendstat: Ganj_Dareh_N Steppe_Eneolithic 0.962
  214. gendstat: Ganj_Dareh_N Caucasus_Eneolithic 0.354
  215. gendstat: Ganj_Dareh_N Kazakhstan_Botai.SG -0.492
  216. gendstat: PPN Anatolia_N -0.734
  217. gendstat: PPN Iberia_MN -1.572
  218. gendstat: PPN CHG -1.572
  219. gendstat: PPN EEHG -0.604
  220. gendstat: PPN WEHG -0.578
  221. gendstat: PPN WSHG -0.742
  222. gendstat: PPN Onge.DG -0.867
  223. gendstat: PPN Russia_Shamanka_EN.SG -1.206
  224. gendstat: PPN Steppe_Eneolithic -0.085
  225. gendstat: PPN Caucasus_Eneolithic -0.511
  226. gendstat: PPN Kazakhstan_Botai.SG -1.363
  227. gendstat: Anatolia_N Iberia_MN -1.223
  228. gendstat: Anatolia_N CHG -1.177
  229. gendstat: Anatolia_N EEHG -0.099
  230. gendstat: Anatolia_N WEHG 0.064
  231. gendstat: Anatolia_N WSHG -0.252
  232. gendstat: Anatolia_N Onge.DG -0.368
  233. gendstat: Anatolia_N Russia_Shamanka_EN.SG -0.775
  234. gendstat: Anatolia_N Steppe_Eneolithic 0.595
  235. gendstat: Anatolia_N Caucasus_Eneolithic 0.002
  236. gendstat: Anatolia_N Kazakhstan_Botai.SG -0.983
  237. gendstat: Iberia_MN CHG -0.224
  238. gendstat: Iberia_MN EEHG 0.758
  239. gendstat: Iberia_MN WEHG 1.132
  240. gendstat: Iberia_MN WSHG 0.592
  241. gendstat: Iberia_MN Onge.DG 0.555
  242. gendstat: Iberia_MN Russia_Shamanka_EN.SG 0.222
  243. gendstat: Iberia_MN Steppe_Eneolithic 1.473
  244. gendstat: Iberia_MN Caucasus_Eneolithic 0.829
  245. gendstat: Iberia_MN Kazakhstan_Botai.SG 0.014
  246. gendstat: CHG EEHG 0.904
  247. gendstat: CHG WEHG 1.157
  248. gendstat: CHG WSHG 0.784
  249. gendstat: CHG Onge.DG 0.721
  250. gendstat: CHG Russia_Shamanka_EN.SG 0.420
  251. gendstat: CHG Steppe_Eneolithic 1.704
  252. gendstat: CHG Caucasus_Eneolithic 1.049
  253. gendstat: CHG Kazakhstan_Botai.SG 0.229
  254. gendstat: EEHG WEHG 0.153
  255. gendstat: EEHG WSHG -0.152
  256. gendstat: EEHG Onge.DG -0.219
  257. gendstat: EEHG Russia_Shamanka_EN.SG -0.584
  258. gendstat: EEHG Steppe_Eneolithic 0.637
  259. gendstat: EEHG Caucasus_Eneolithic 0.082
  260. gendstat: EEHG Kazakhstan_Botai.SG -0.870
  261. gendstat: WEHG WSHG -0.299
  262. gendstat: WEHG Onge.DG -0.405
  263. gendstat: WEHG Russia_Shamanka_EN.SG -0.846
  264. gendstat: WEHG Steppe_Eneolithic 0.550
  265. gendstat: WEHG Caucasus_Eneolithic -0.037
  266. gendstat: WEHG Kazakhstan_Botai.SG -1.055
  267. gendstat: WSHG Onge.DG -0.076
  268. gendstat: WSHG Russia_Shamanka_EN.SG -0.427
  269. gendstat: WSHG Steppe_Eneolithic 0.845
  270. gendstat: WSHG Caucasus_Eneolithic 0.202
  271. gendstat: WSHG Kazakhstan_Botai.SG -0.686
  272. gendstat: Onge.DG Russia_Shamanka_EN.SG -0.386
  273. gendstat: Onge.DG Steppe_Eneolithic 0.865
  274. gendstat: Onge.DG Caucasus_Eneolithic 0.288
  275. gendstat: Onge.DG Kazakhstan_Botai.SG -0.546
  276. gendstat: Russia_Shamanka_EN.SG Steppe_Eneolithic 1.295
  277. gendstat: Russia_Shamanka_EN.SG Caucasus_Eneolithic 0.596
  278. gendstat: Russia_Shamanka_EN.SG Kazakhstan_Botai.SG -0.234
  279. gendstat: Steppe_Eneolithic Caucasus_Eneolithic -0.466
  280. gendstat: Steppe_Eneolithic Kazakhstan_Botai.SG -1.627
  281. gendstat: Caucasus_Eneolithic Kazakhstan_Botai.SG -0.766
  282.  
  283. ## end of run
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