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dosas_EBA_N_4_way

dosas
May 15th, 2022
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  1. qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: /home/dosas/host/dosas1240K/fstatsa.txt
  5. popleft: /home/dosas/host/dosas1240K/left.txt
  6. popright: /home/dosas/host/dosas1240K/right.txt
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: 1749371972
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. dosas
  15. Turkey_N.SG
  16. Russia_Samara_EBA_Yamnaya
  17. Iran_N
  18. CHG
  19.  
  20. right pops:
  21. Mbuti.DG
  22. Russia_Ust_Ishim.DG
  23. China_Tianyuan
  24. Goyet_Neanderthal.SG
  25. Russia_Sunghir3.SG
  26. Russia_Kostenki14.SG
  27. Russia_MA1_HG.SG
  28. SATP
  29. Russia_DevilsCave_N.SG
  30. Papuan.DG
  31. Switzerland_Bichon.SG
  32. Natufian
  33. Iberomaurusian
  34. Tarim_EMBA1
  35. ONG.SG
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 3 dof: 11 chisq: 17.211 tail: 0.101773486 dofdiff: 13 chisqdiff: -17.211 taildiff: 1
  40. B:
  41. scale 1.000 1.000 1.000
  42. Russia_Ust_Ishim.DG 0.139 0.396 0.099
  43. China_Tianyuan 0.548 0.405 -0.555
  44. Goyet_Neanderthal.SG -0.051 0.132 0.142
  45. Russia_Sunghir3.SG 0.039 1.049 0.909
  46. Russia_Kostenki14.SG 0.129 0.883 0.363
  47. Russia_MA1_HG.SG 1.372 1.422 -0.877
  48. SATP 2.165 -1.207 2.036
  49. Russia_DevilsCave_N.SG 0.618 0.364 -0.014
  50. Papuan.DG 0.406 0.337 -0.378
  51. Switzerland_Bichon.SG 0.097 1.891 1.051
  52. Natufian -1.495 1.013 1.680
  53. Iberomaurusian -0.552 0.662 1.067
  54. Tarim_EMBA1 1.958 1.677 -1.598
  55. ONG.SG 0.401 0.452 -0.174
  56. A:
  57. scale 527.054 553.522 1012.892
  58. Turkey_N.SG -0.582 0.001 0.359
  59. Russia_Samara_EBA_Yamnaya 1.212 1.019 -0.546
  60. Iran_N 0.066 -1.274 -1.548
  61. CHG 1.479 -1.157 1.085
  62.  
  63.  
  64. full rank
  65. f4info:
  66. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 17.211 taildiff: 0.101773486
  67. B:
  68. scale 828.118 290.242 382.228 299.771
  69. Russia_Ust_Ishim.DG 0.279 0.435 -0.257 0.040
  70. China_Tianyuan -0.318 0.774 0.107 0.130
  71. Goyet_Neanderthal.SG -0.113 -0.065 -0.295 -0.129
  72. Russia_Sunghir3.SG 0.505 0.535 -1.334 -0.220
  73. Russia_Kostenki14.SG 0.641 0.722 -0.726 -0.092
  74. Russia_MA1_HG.SG -1.523 1.792 -0.697 -0.066
  75. SATP -1.258 0.537 0.031 3.294
  76. Russia_DevilsCave_N.SG -0.036 0.788 -0.076 0.442
  77. Papuan.DG -0.761 0.422 -0.203 -0.104
  78. Switzerland_Bichon.SG -0.107 0.825 -2.412 -0.876
  79. Natufian 2.018 -0.663 -1.914 -1.320
  80. Iberomaurusian 0.922 -0.142 -1.186 -0.514
  81. Tarim_EMBA1 -1.925 2.540 -0.319 0.198
  82. ONG.SG 0.147 0.714 -0.059 0.172
  83. A:
  84. scale 2.000 2.000 2.000 2.000
  85. Turkey_N.SG 2.000 0.000 0.000 0.000
  86. Russia_Samara_EBA_Yamnaya 0.000 2.000 0.000 0.000
  87. Iran_N 0.000 0.000 2.000 0.000
  88. CHG 0.000 0.000 0.000 2.000
  89.  
  90.  
  91. best coefficients: 0.613 0.211 0.112 0.063
  92. totmean: 0.613 0.211 0.112 0.063
  93. boot mean: 0.614 0.211 0.111 0.063
  94. std. errors: 0.042 0.035 0.075 0.047
  95.  
  96. error covariance (* 1,000,000)
  97. 1786 -116 -1989 319
  98. -116 1253 -1098 -39
  99. -1989 -1098 5621 -2533
  100. 319 -39 -2533 2253
  101.  
  102.  
  103. summ: dosas 4 0.101773 0.614 0.211 0.111 0.063 1786 -116 -1989 319 1253 ...
  104. -1098 -39 5621 -2533 2253
  105.  
  106. fixed pat wt dof chisq tail prob
  107. 0000 0 11 17.211 0.101773 0.613 0.211 0.112 0.063
  108. 0001 1 12 19.587 0.0753062 0.603 0.215 0.181 0.000
  109. 0010 1 12 19.996 0.0671531 0.652 0.239 0.000 0.109
  110. 0100 1 12 49.542 1.68089e-06 0.639 0.000 0.270 0.091
  111. 1000 1 12 348.730 0 0.000 0.374 4.302 -3.677 infeasible
  112. 0011 2 13 30.147 0.00448561 0.710 0.290 0.000 0.000
  113. 0101 2 13 52.952 9.21201e-07 0.633 0.000 0.367 0.000
  114. 0110 2 13 66.686 3.2512e-09 0.759 0.000 0.000 0.241
  115. 1001 2 13 212.800 0 0.000 0.244 0.756 0.000
  116. 1010 2 13 321.149 0 0.000 0.276 0.000 0.724
  117. 1100 2 13 250.733 0 0.000 0.000 1.275 -0.275 infeasible
  118. 0111 3 14 117.114 2.30823e-18 1.000 0.000 0.000 0.000
  119. 1011 3 14 521.719 0 0.000 1.000 0.000 0.000
  120. 1101 3 14 243.253 0 0.000 0.000 1.000 0.000
  121. 1110 3 14 343.031 0 0.000 0.000 0.000 1.000
  122. best pat: 0000 0.101773 - -
  123. best pat: 0001 0.0753062 chi(nested): 2.376 p-value for nested model: 0.123226
  124. best pat: 0011 0.00448561 chi(nested): 10.559 p-value for nested model: 0.00115595
  125. best pat: 0111 2.30823e-18 chi(nested): 86.967 p-value for nested model: 1.10357e-20
  126.  
  127. coeffs: 0.613 0.211 0.112 0.063
  128.  
  129. ## dscore:: f_4(Base, Fit, Rbase, right2)
  130. ## genstat:: f_4(Base, Fit, right1, right2)
  131.  
  132. details: Turkey_N.SG Russia_Ust_Ishim.DG 0.000337 0.692975
  133. details: Russia_Samara_EBA_Yamnaya Russia_Ust_Ishim.DG 0.001497 3.178013
  134. details: Iran_N Russia_Ust_Ishim.DG -0.000673 -1.320072
  135. details: CHG Russia_Ust_Ishim.DG 0.000132 0.216276
  136. dscore: Russia_Ust_Ishim.DG f4: 0.000456 Z: 1.014294
  137.  
  138. details: Turkey_N.SG China_Tianyuan -0.000384 -0.753092
  139. details: Russia_Samara_EBA_Yamnaya China_Tianyuan 0.002666 5.328171
  140. details: Iran_N China_Tianyuan 0.000281 0.529185
  141. details: CHG China_Tianyuan 0.000434 0.657042
  142. dscore: China_Tianyuan f4: 0.000387 Z: 0.820905
  143.  
  144. details: Turkey_N.SG Goyet_Neanderthal.SG -0.000137 -0.410216
  145. details: Russia_Samara_EBA_Yamnaya Goyet_Neanderthal.SG -0.000225 -0.698137
  146. details: Iran_N Goyet_Neanderthal.SG -0.000773 -2.196209
  147. details: CHG Goyet_Neanderthal.SG -0.000430 -1.058373
  148. dscore: Goyet_Neanderthal.SG f4: -0.000245 Z: -0.817048
  149.  
  150. details: Turkey_N.SG Russia_Sunghir3.SG 0.000609 1.086729
  151. details: Russia_Samara_EBA_Yamnaya Russia_Sunghir3.SG 0.001842 3.442767
  152. details: Iran_N Russia_Sunghir3.SG -0.003490 -5.981011
  153. details: CHG Russia_Sunghir3.SG -0.000734 -1.055693
  154. dscore: Russia_Sunghir3.SG f4: 0.000326 Z: 0.633697
  155.  
  156. details: Turkey_N.SG Russia_Kostenki14.SG 0.000774 1.430708
  157. details: Russia_Samara_EBA_Yamnaya Russia_Kostenki14.SG 0.002489 4.828774
  158. details: Iran_N Russia_Kostenki14.SG -0.001900 -3.349355
  159. details: CHG Russia_Kostenki14.SG -0.000306 -0.440956
  160. dscore: Russia_Kostenki14.SG f4: 0.000769 Z: 1.535692
  161.  
  162. details: Turkey_N.SG Russia_MA1_HG.SG -0.001839 -3.207092
  163. details: Russia_Samara_EBA_Yamnaya Russia_MA1_HG.SG 0.006173 11.418658
  164. details: Iran_N Russia_MA1_HG.SG -0.001823 -3.085685
  165. details: CHG Russia_MA1_HG.SG -0.000220 -0.301613
  166. dscore: Russia_MA1_HG.SG f4: -0.000042 Z: -0.081249
  167.  
  168. details: Turkey_N.SG SATP -0.001520 -2.670445
  169. details: Russia_Samara_EBA_Yamnaya SATP 0.001851 3.534560
  170. details: Iran_N SATP 0.000081 0.140947
  171. details: CHG SATP 0.010989 14.777709
  172. dscore: SATP f4: 0.000162 Z: 0.316156
  173.  
  174. details: Turkey_N.SG Russia_DevilsCave_N.SG -0.000043 -0.102158
  175. details: Russia_Samara_EBA_Yamnaya Russia_DevilsCave_N.SG 0.002716 6.586669
  176. details: Iran_N Russia_DevilsCave_N.SG -0.000200 -0.424041
  177. details: CHG Russia_DevilsCave_N.SG 0.001475 2.709065
  178. dscore: Russia_DevilsCave_N.SG f4: 0.000618 Z: 1.591461
  179.  
  180. details: Turkey_N.SG Papuan.DG -0.000919 -2.231971
  181. details: Russia_Samara_EBA_Yamnaya Papuan.DG 0.001454 3.591998
  182. details: Iran_N Papuan.DG -0.000532 -1.228888
  183. details: CHG Papuan.DG -0.000347 -0.675081
  184. dscore: Papuan.DG f4: -0.000338 Z: -0.887138
  185.  
  186. details: Turkey_N.SG Switzerland_Bichon.SG -0.000130 -0.233584
  187. details: Russia_Samara_EBA_Yamnaya Switzerland_Bichon.SG 0.002843 5.164398
  188. details: Iran_N Switzerland_Bichon.SG -0.006310 -10.999276
  189. details: CHG Switzerland_Bichon.SG -0.002924 -4.149032
  190. dscore: Switzerland_Bichon.SG f4: -0.000370 Z: -0.719676
  191.  
  192. details: Turkey_N.SG Natufian 0.002437 3.995047
  193. details: Russia_Samara_EBA_Yamnaya Natufian -0.002283 -4.110853
  194. details: Iran_N Natufian -0.005009 -8.258174
  195. details: CHG Natufian -0.004405 -5.984703
  196. dscore: Natufian f4: 0.000173 Z: 0.316581
  197.  
  198. details: Turkey_N.SG Iberomaurusian 0.001113 2.849673
  199. details: Russia_Samara_EBA_Yamnaya Iberomaurusian -0.000490 -1.347726
  200. details: Iran_N Iberomaurusian -0.003104 -7.717776
  201. details: CHG Iberomaurusian -0.001715 -3.503012
  202. dscore: Iberomaurusian f4: 0.000123 Z: 0.345839
  203.  
  204. details: Turkey_N.SG Tarim_EMBA1 -0.002324 -5.130286
  205. details: Russia_Samara_EBA_Yamnaya Tarim_EMBA1 0.008752 19.429760
  206. details: Iran_N Tarim_EMBA1 -0.000835 -1.681601
  207. details: CHG Tarim_EMBA1 0.000662 1.158327
  208. dscore: Tarim_EMBA1 f4: 0.000372 Z: 0.885292
  209.  
  210. details: Turkey_N.SG ONG.SG 0.000177 0.416047
  211. details: Russia_Samara_EBA_Yamnaya ONG.SG 0.002458 6.155461
  212. details: Iran_N ONG.SG -0.000153 -0.343973
  213. details: CHG ONG.SG 0.000573 1.120411
  214. dscore: ONG.SG f4: 0.000647 Z: 1.666207
  215.  
  216. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 1.014
  217. gendstat: Mbuti.DG China_Tianyuan 0.821
  218. gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.817
  219. gendstat: Mbuti.DG Russia_Sunghir3.SG 0.634
  220. gendstat: Mbuti.DG Russia_Kostenki14.SG 1.536
  221. gendstat: Mbuti.DG Russia_MA1_HG.SG -0.081
  222. gendstat: Mbuti.DG SATP 0.316
  223. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 1.591
  224. gendstat: Mbuti.DG Papuan.DG -0.887
  225. gendstat: Mbuti.DG Switzerland_Bichon.SG -0.720
  226. gendstat: Mbuti.DG Natufian 0.317
  227. gendstat: Mbuti.DG Iberomaurusian 0.346
  228. gendstat: Mbuti.DG Tarim_EMBA1 0.885
  229. gendstat: Mbuti.DG ONG.SG 1.666
  230. gendstat: Russia_Ust_Ishim.DG China_Tianyuan -0.128
  231. gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -1.342
  232. gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.232
  233. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.554
  234. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.855
  235. gendstat: Russia_Ust_Ishim.DG SATP -0.499
  236. gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG 0.352
  237. gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.769
  238. gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -1.420
  239. gendstat: Russia_Ust_Ishim.DG Natufian -0.450
  240. gendstat: Russia_Ust_Ishim.DG Iberomaurusian -0.662
  241. gendstat: Russia_Ust_Ishim.DG Tarim_EMBA1 -0.175
  242. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.426
  243. gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.132
  244. gendstat: China_Tianyuan Russia_Sunghir3.SG -0.108
  245. gendstat: China_Tianyuan Russia_Kostenki14.SG 0.657
  246. gendstat: China_Tianyuan Russia_MA1_HG.SG -0.739
  247. gendstat: China_Tianyuan SATP -0.357
  248. gendstat: China_Tianyuan Russia_DevilsCave_N.SG 0.506
  249. gendstat: China_Tianyuan Papuan.DG -1.598
  250. gendstat: China_Tianyuan Switzerland_Bichon.SG -1.268
  251. gendstat: China_Tianyuan Natufian -0.321
  252. gendstat: China_Tianyuan Iberomaurusian -0.521
  253. gendstat: China_Tianyuan Tarim_EMBA1 -0.030
  254. gendstat: China_Tianyuan ONG.SG 0.579
  255. gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 1.017
  256. gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 1.773
  257. gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG 0.344
  258. gendstat: Goyet_Neanderthal.SG SATP 0.699
  259. gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 1.836
  260. gendstat: Goyet_Neanderthal.SG Papuan.DG -0.196
  261. gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG -0.216
  262. gendstat: Goyet_Neanderthal.SG Natufian 0.676
  263. gendstat: Goyet_Neanderthal.SG Iberomaurusian 0.802
  264. gendstat: Goyet_Neanderthal.SG Tarim_EMBA1 1.224
  265. gendstat: Goyet_Neanderthal.SG ONG.SG 1.860
  266. gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.794
  267. gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -0.655
  268. gendstat: Russia_Sunghir3.SG SATP -0.251
  269. gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 0.569
  270. gendstat: Russia_Sunghir3.SG Papuan.DG -1.299
  271. gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -1.220
  272. gendstat: Russia_Sunghir3.SG Natufian -0.227
  273. gendstat: Russia_Sunghir3.SG Iberomaurusian -0.382
  274. gendstat: Russia_Sunghir3.SG Tarim_EMBA1 0.090
  275. gendstat: Russia_Sunghir3.SG ONG.SG 0.626
  276. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.428
  277. gendstat: Russia_Kostenki14.SG SATP -0.981
  278. gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG -0.278
  279. gendstat: Russia_Kostenki14.SG Papuan.DG -2.144
  280. gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.999
  281. gendstat: Russia_Kostenki14.SG Natufian -0.886
  282. gendstat: Russia_Kostenki14.SG Iberomaurusian -1.240
  283. gendstat: Russia_Kostenki14.SG Tarim_EMBA1 -0.780
  284. gendstat: Russia_Kostenki14.SG ONG.SG -0.232
  285. gendstat: Russia_MA1_HG.SG SATP 0.322
  286. gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 1.248
  287. gendstat: Russia_MA1_HG.SG Papuan.DG -0.579
  288. gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -0.552
  289. gendstat: Russia_MA1_HG.SG Natufian 0.314
  290. gendstat: Russia_MA1_HG.SG Iberomaurusian 0.313
  291. gendstat: Russia_MA1_HG.SG Tarim_EMBA1 0.905
  292. gendstat: Russia_MA1_HG.SG ONG.SG 1.375
  293. gendstat: SATP Russia_DevilsCave_N.SG 0.843
  294. gendstat: SATP Papuan.DG -0.912
  295. gendstat: SATP Switzerland_Bichon.SG -0.882
  296. gendstat: SATP Natufian 0.016
  297. gendstat: SATP Iberomaurusian -0.070
  298. gendstat: SATP Tarim_EMBA1 0.384
  299. gendstat: SATP ONG.SG 0.928
  300. gendstat: Russia_DevilsCave_N.SG Papuan.DG -2.558
  301. gendstat: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -1.828
  302. gendstat: Russia_DevilsCave_N.SG Natufian -0.743
  303. gendstat: Russia_DevilsCave_N.SG Iberomaurusian -1.152
  304. gendstat: Russia_DevilsCave_N.SG Tarim_EMBA1 -0.633
  305. gendstat: Russia_DevilsCave_N.SG ONG.SG 0.079
  306. gendstat: Papuan.DG Switzerland_Bichon.SG -0.061
  307. gendstat: Papuan.DG Natufian 0.832
  308. gendstat: Papuan.DG Iberomaurusian 1.105
  309. gendstat: Papuan.DG Tarim_EMBA1 1.718
  310. gendstat: Papuan.DG ONG.SG 2.896
  311. gendstat: Switzerland_Bichon.SG Natufian 0.818
  312. gendstat: Switzerland_Bichon.SG Iberomaurusian 0.951
  313. gendstat: Switzerland_Bichon.SG Tarim_EMBA1 1.439
  314. gendstat: Switzerland_Bichon.SG ONG.SG 1.893
  315. gendstat: Natufian Iberomaurusian -0.087
  316. gendstat: Natufian Tarim_EMBA1 0.334
  317. gendstat: Natufian ONG.SG 0.782
  318. gendstat: Iberomaurusian Tarim_EMBA1 0.560
  319. gendstat: Iberomaurusian ONG.SG 1.205
  320. gendstat: Tarim_EMBA1 ONG.SG 0.674
  321.  
  322. ##end of qpAdm: 24.593 seconds cpu 1.597 Mbytes in use
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