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  1. C:\Users\zerg\AppData\Local\Programs\Python\Python36\python.exe C:/Users/zerg/Desktop/Bioinformatyka_Projekt/fr3d_modifications.py
  2. Searching for pdb database for given RNA id...
  3. File saved to: C:\Users\zerg\Desktop\Bioinformatyka_Projekt\1EHZ_fr3d_basepairs.csv
  4. Searching for pdb database for given RNA id...
  5. Structure exists: 'C:\Users\zerg\Desktop\Bioinformatyka_Projekt\pdb1ehz.ent'
  6.  
  7. FR3D file for given pdb: 1EHZ has 1 chain
  8. ['A']
  9.  
  10. FR3D file for given pdb: 1EHZ has 51 residues
  11. ['1', '2', '3', '4', '5', '6', '7', '8', '8', '9', '11', '12', '13', '14', '14', '15', '19', '21', '21', '22', '23', '23', '24', '27', '28', '29', '33', '36', '41', '42', '43', '48', '50', '51', '52', '53', '56', '61', '62', '63', '64', '66', '67', '68', '69', '70', '71', '72', 16, 37, 712]
  12.  
  13. FR3D chemical bonds for given pdb: 1EHZ
  14. {'1': 'cWW', '2': 'cWW', '3': 'cWW', '4': 'cWW', '5': 'cWW', '6': 'cWW', '7': 'cWW', '8': 'tWH', '9': 'tHH', '11': 'cWW', '12': 'cWW', '13': 'cWW', '14': 'ncWS', '15': 'tWW', '19': 'cWW', '21': 'tSS', '22': 'cWW', '23': 'tHH', '24': 'cWW', '27': 'cWW', '28': 'cWW', '29': 'cWW', '33': 'tSH', '36': 'tHS', '41': 'cWW', '42': 'cWW', '43': 'cWW', '48': 'tWW', '50': 'cWW', '51': 'cWW', '52': 'cWW', '53': 'cWW', '56': 'cWW', '61': 'cWW', '62': 'cWW', '63': 'cWW', '64': 'cWW', '66': 'cWW', '67': 'cWW', '68': 'cWW', '69': 'cWW', '70': 'cWW', '71': 'cWW', '72': 'cWW'}
  15.  
  16. FR3D bond types for given residues in given pdb: 1EHZ
  17. {'1': 'canonical', '2': 'canonical', '3': 'canonical', '4': 'non-canonical', '5': 'canonical', '6': 'canonical', '7': 'canonical', '8': 'canonical', '9': 'non-canonical', '11': 'canonical', '12': 'canonical', '13': 'canonical', '14': 'non-canonical', '15': 'canonical', '19': 'canonical', '21': 'canonical', '22': 'canonical', '23': 'non-canonical', '24': 'canonical', '27': 'canonical', '28': 'canonical', '29': 'canonical', '33': 'canonical', '36': 'canonical', '41': 'canonical', '42': 'canonical', '43': 'canonical', '48': 'canonical', '50': 'canonical', '51': 'canonical', '52': 'canonical', '53': 'canonical', '56': 'canonical', '61': 'canonical', '62': 'canonical', '63': 'canonical', '64': 'canonical', '66': 'canonical', '67': 'canonical', '68': 'canonical', '69': 'non-canonical', '70': 'canonical', '71': 'canonical', '72': 'canonical'}
  18.  
  19. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '1', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['OP3', 'P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 24}
  20. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '2', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  21. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '3', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  22. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '4', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'non-canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  23. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '5', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  24. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '6', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  25. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '7', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  26. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '8', 'chain_id': 'A', 'chemical_bond': 'tWH', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  27. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '9', 'chain_id': 'A', 'chemical_bond': 'tHH', 'bond_type': 'non-canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  28. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '11', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  29. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '12', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  30. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '13', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  31. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '14', 'chain_id': 'A', 'chemical_bond': 'ncWS', 'bond_type': 'non-canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  32. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '15', 'chain_id': 'A', 'chemical_bond': 'tWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  33. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '19', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  34. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '21', 'chain_id': 'A', 'chemical_bond': 'tSS', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  35. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '22', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  36. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '23', 'chain_id': 'A', 'chemical_bond': 'tHH', 'bond_type': 'non-canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  37. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '24', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  38. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '27', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  39. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '28', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  40. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '29', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  41. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '33', 'chain_id': 'A', 'chemical_bond': 'tSH', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  42. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '36', 'chain_id': 'A', 'chemical_bond': 'tHS', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  43. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '41', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  44. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '42', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  45. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '43', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  46. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '48', 'chain_id': 'A', 'chemical_bond': 'tWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  47. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '50', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  48. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '51', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  49. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '52', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  50. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '53', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  51. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '56', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  52. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '61', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  53. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '62', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  54. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '63', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  55. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '64', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  56. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '66', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  57. {'id': 'ATOM', 'residue_name': 'A', 'residue_number': '67', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'N6', 'N1', 'C2', 'N3', 'C4'], 'lenght': 22}
  58. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '68', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  59. {'id': 'ATOM', 'residue_name': 'U', 'residue_number': '69', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'non-canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  60. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '70', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  61. {'id': 'ATOM', 'residue_name': 'G', 'residue_number': '71', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C4'], 'lenght': 23}
  62. {'id': 'ATOM', 'residue_name': 'C', 'residue_number': '72', 'chain_id': 'A', 'chemical_bond': 'cWW', 'bond_type': 'canonical', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N1', 'C2', 'O2', 'N3', 'C4', 'N4', 'C5', 'C6'], 'lenght': 20}
  63.  
  64.  
  65.  
  66. Searching for pdb database for given RNA id...
  67. File saved to: C:\Users\zerg\Desktop\Bioinformatyka_Projekt\1EHZ_fr3d_basepairs.csv
  68. Searching for pdb database for given RNA id...
  69. Structure exists: 'C:\Users\zerg\Desktop\Bioinformatyka_Projekt\pdb1ehz.ent'
  70. FR3D file for given pdb: 1EHZ has 1 chain
  71. ['A']
  72.  
  73. FR3D file for given pdb: 1EHZ has 51 residues
  74. ['1', '2', '3', '4', '5', '6', '7', '8', '8', '9', '11', '12', '13', '14', '14', '15', '19', '21', '21', '22', '23', '23', '24', '27', '28', '29', '33', '36', '41', '42', '43', '48', '50', '51', '52', '53', '56', '61', '62', '63', '64', '66', '67', '68', '69', '70', '71', '72', 16, 37, 712]
  75.  
  76. FR3D chemical bonds for given pdb: 1EHZ
  77. {'1': 'cWW', '2': 'cWW', '3': 'cWW', '4': 'cWW', '5': 'cWW', '6': 'cWW', '7': 'cWW', '8': 'tSS', '9': 'tHH', '11': 'cWW', '12': 'cWW', '13': 'cWW', '14': 'ncWS', '15': 'tWW', '19': 'cWW', '21': 'ncSW', '22': 'cWW', '23': 'cWW', '24': 'cWW', '27': 'cWW', '28': 'cWW', '29': 'cWW', '33': 'tSH', '36': 'tHS', '41': 'cWW', '42': 'cWW', '43': 'cWW', '48': 'tWW', '50': 'cWW', '51': 'cWW', '52': 'cWW', '53': 'cWW', '56': 'cWW', '61': 'cWW', '62': 'cWW', '63': 'cWW', '64': 'cWW', '66': 'cWW', '67': 'cWW', '68': 'cWW', '69': 'cWW', '70': 'cWW', '71': 'cWW', '72': 'cWW'}
  78.  
  79. FR3D bond types for given residues in given pdb: 1EHZ
  80. {'1': 'canonical', '2': 'canonical', '3': 'canonical', '4': 'non-canonical', '5': 'canonical', '6': 'canonical', '7': 'canonical', '8': 'canonical', '9': 'non-canonical', '11': 'canonical', '12': 'canonical', '13': 'canonical', '14': 'non-canonical', '15': 'canonical', '19': 'canonical', '21': 'non-canonical', '22': 'canonical', '23': 'canonical', '24': 'canonical', '27': 'canonical', '28': 'canonical', '29': 'canonical', '33': 'canonical', '36': 'canonical', '41': 'canonical', '42': 'canonical', '43': 'canonical', '48': 'canonical', '50': 'canonical', '51': 'canonical', '52': 'canonical', '53': 'canonical', '56': 'canonical', '61': 'canonical', '62': 'canonical', '63': 'canonical', '64': 'canonical', '66': 'canonical', '67': 'canonical', '68': 'canonical', '69': 'non-canonical', '70': 'canonical', '71': 'canonical', '72': 'canonical'}
  81.  
  82. {'id': 'HETATM', 'residue_name': 'H2U', 'residue_number': '16', 'chain_id': 'A', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C1'", "C2'", "O2'", 'N1', 'C2', 'O2', 'N3', 'C4', 'O4', 'C5', 'C6'], 'lenght': 20}
  83. {'id': 'HETATM', 'residue_name': 'YYG', 'residue_number': '37', 'chain_id': 'A', 'atoms_building': ['P', 'OP1', 'OP2', "O5'", "C5'", "C4'", "O4'", "C3'", "O3'", "C2'", "O2'", "C1'", 'N9', 'C8', 'N7', 'C5', 'C6', 'O6', 'N1', 'C2', 'N2', 'N3', 'C3', 'C4', 'C10', 'C11', 'C12', 'C13', 'C14', 'C15', 'C16', 'O17', 'O18', 'C19', 'N20', 'C21', 'O22', 'O23', 'C24'], 'lenght': 39}
  84.  
  85. Process finished with exit code 0
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