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  1. ============================= test session starts ==============================
  2. platform linux2 -- Python 2.7.13, pytest-3.0.7, py-1.5.2, pluggy-0.4.0
  3. rootdir: /home/pi/nupic, inifile:
  4. plugins: xdist-1.16.0, cov-2.5.0
  5. collected 734 items
  6.  
  7. tests/unit/nupic/serializable_test.py ..
  8. tests/unit/nupic/utils_test.py ......
  9. tests/unit/nupic/algorithms/anomaly_likelihood_jeff_test.py ...ss..
  10. tests/unit/nupic/algorithms/anomaly_likelihood_test.py .....................
  11. tests/unit/nupic/algorithms/anomaly_test.py ..............
  12. tests/unit/nupic/algorithms/backtracking_tm_constant_test.py *** Synapse consistency checking turned on for Cells4 ***
  13. .*** Synapse consistency checking turned on for Cells4 ***
  14. .*** Synapse consistency checking turned on for Cells4 ***
  15. .
  16. tests/unit/nupic/algorithms/backtracking_tm_cpp2_test.py *** Synapse consistency checking turned on for Cells4 ***
  17. *** Python segment match turned on for Cells4
  18. .
  19. tests/unit/nupic/algorithms/backtracking_tm_cpp_test.py ....FFF
  20. tests/unit/nupic/algorithms/backtracking_tm_test.py ....FFF
  21. tests/unit/nupic/algorithms/connections_test.py .........
  22. tests/unit/nupic/algorithms/inhibition_object_test.py s
  23. tests/unit/nupic/algorithms/knn_classifier_test.py .........s...
  24. tests/unit/nupic/algorithms/sdr_classifier_test.py ...........................
  25. tests/unit/nupic/algorithms/sp_learn_inference_test.py s
  26. tests/unit/nupic/algorithms/sp_overlap_test.py .s.s
  27. tests/unit/nupic/algorithms/spatial_pooler_boost_test.py ..
  28. tests/unit/nupic/algorithms/spatial_pooler_compatability_test.py ...ss....
  29. tests/unit/nupic/algorithms/spatial_pooler_compute_test.py ..
  30. tests/unit/nupic/algorithms/spatial_pooler_cpp_api_test.py ............................
  31. tests/unit/nupic/algorithms/spatial_pooler_cpp_unit_test.py ....
  32. tests/unit/nupic/algorithms/spatial_pooler_py_api_test.py ............................
  33. tests/unit/nupic/algorithms/spatial_pooler_unit_test.py s..............................F....
  34. tests/unit/nupic/algorithms/temporal_memory_test.py ...............................s.....s.
  35. tests/unit/nupic/algorithms/monitor_mixin/metric_test.py ..
  36. tests/unit/nupic/algorithms/monitor_mixin/trace_test.py ..
  37. tests/unit/nupic/data/aggregator_test.py .
  38. tests/unit/nupic/data/dictutils_test.py ......
  39. tests/unit/nupic/data/fieldmeta_test.py .....
  40. tests/unit/nupic/data/file_record_stream_test.py ......
  41. tests/unit/nupic/data/filters_test.py s
  42. tests/unit/nupic/data/functionsource_test.py ......
  43. tests/unit/nupic/data/inference_shifter_test.py ........
  44. tests/unit/nupic/data/record_stream_test.py .......
  45. tests/unit/nupic/data/utils_test.py .......
  46. tests/unit/nupic/data/generators/anomalyzer_test.py ...........
  47. tests/unit/nupic/data/generators/pattern_machine_test.py .........
  48. tests/unit/nupic/data/generators/sequence_machine_test.py .....
  49. tests/unit/nupic/docs/examples_test.py .xx.xxxxxx
  50. tests/unit/nupic/encoders/adaptivescalar_test.py .......
  51. tests/unit/nupic/encoders/category_test.py ..
  52. tests/unit/nupic/encoders/coordinate_test.py .................
  53. tests/unit/nupic/encoders/date_test.py ........
  54. tests/unit/nupic/encoders/delta_test.py .....
  55. tests/unit/nupic/encoders/geospatial_coordinate_test.py ...........
  56. tests/unit/nupic/encoders/logenc_test.py ......
  57. tests/unit/nupic/encoders/multi_test.py ..
  58. tests/unit/nupic/encoders/pass_through_encoder_test.py ....
  59. tests/unit/nupic/encoders/random_distributed_scalar_test.py ...............
  60. tests/unit/nupic/encoders/scalar_test.py .............
  61. tests/unit/nupic/encoders/scalarspace_test.py .
  62. tests/unit/nupic/encoders/sdrcategory_test.py ...
  63. tests/unit/nupic/encoders/sparse_pass_through_encoder_test.py .....
  64. tests/unit/nupic/engine/network_test.py FF..F.FFFFF
  65. tests/unit/nupic/engine/syntactic_sugar_test.py .F...
  66. tests/unit/nupic/engine/unified_py_parameter_test.py ..
  67. tests/unit/nupic/frameworks/opf/htmpredictionmodel_classifier_helper_test.py ......................
  68. tests/unit/nupic/frameworks/opf/htmpredictionmodel_test.py ......
  69. tests/unit/nupic/frameworks/opf/opf_metrics_test.py ...............................
  70. tests/unit/nupic/frameworks/opf/previous_value_model_test.py .......
  71. tests/unit/nupic/frameworks/opf/safe_interpreter_test.py ........
  72. tests/unit/nupic/frameworks/opf/two_gram_model_test.py ......
  73. tests/unit/nupic/frameworks/opf/common_models/cluster_params_test.py .
  74. tests/unit/nupic/math/lgamma_test.py .
  75. tests/unit/nupic/math/topology_test.py ....................
  76. tests/unit/nupic/regions/anomaly_likelihood_region_test.py ...
  77. tests/unit/nupic/regions/anomaly_region_test.py F
  78. tests/unit/nupic/regions/knn_anomaly_classifier_region_test.py .....................
  79. tests/unit/nupic/regions/knn_classifier_region_test.py .
  80. tests/unit/nupic/regions/record_sensor_region_test.py ...
  81. tests/unit/nupic/regions/regions_spec_test.py s...s......
  82. tests/unit/nupic/regions/sdr_classifier_region_test.py ..
  83. tests/unit/nupic/regions/tm_region_test.py ....
  84. tests/unit/nupic/support/configuration_test.py ............s....................
  85. tests/unit/nupic/support/custom_configuration_test.py ...................s.........................
  86. tests/unit/nupic/support/decorators_test.py ............
  87. tests/unit/nupic/support/group_by_test.py ......
  88. tests/unit/nupic/support/object_json_test.py ...............
  89. tests/unit/nupic/support/consoleprinter_test/consoleprinter_test.py .
  90.  
  91. =================================== FAILURES ===================================
  92. _________________ BacktrackingTMTest.testSerializationLearned __________________
  93.  
  94. self = <tests.unit.nupic.algorithms.backtracking_tm_test.BacktrackingTMTest testMethod=testSerializationLearned>
  95.  
  96. @unittest.skipUnless(capnp, "pycapnp not installed")
  97. def testSerializationLearned(self):
  98. # Create a model and give it some inputs to learn.
  99. tm1 = BacktrackingTM(numberOfCols=100, cellsPerColumn=12,
  100. verbosity=VERBOSITY)
  101. sequences = [self.generateSequence() for _ in xrange(5)]
  102. train = list(itertools.chain.from_iterable(sequences[:3]))
  103. for bottomUpInput in train:
  104. if bottomUpInput is None:
  105. tm1.reset()
  106. else:
  107. tm1.compute(bottomUpInput, True, True)
  108.  
  109. # Serialize and deserialized the TM.
  110. tmProto = BacktrackingTM.getSchema().new_message()
  111. tm1.write(tmProto)
  112. checkpointPath = os.path.join(self._tmpDir, 'a')
  113. with open(checkpointPath, "wb") as f:
  114. tmProto.write(f)
  115. with open(checkpointPath, "rb") as f:
  116. tmProto = BacktrackingTM.getSchema().read(f)
  117. tm2 = BacktrackingTM.read(tmProto)
  118.  
  119. # Check that the TMs are the same.
  120. > self.assertTMsEqual(tm1, tm2)
  121.  
  122. tests/unit/nupic/algorithms/backtracking_tm_test.py:89:
  123. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  124. tests/unit/nupic/algorithms/backtracking_tm_test.py:348: in assertTMsEqual
  125. self.assertEqual(tm1, tm2, tm1.diff(tm2))
  126. E AssertionError: <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x73df3b10> != <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x73df3f90> : [(('maxSynapsesPerSegment',), -1, -1L), (('maxSegmentsPerCell',), -1, -1L), (('seed',), 42, 42L)]
  127. ----------------------------- Captured stdout call -----------------------------
  128. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6f38> >
  129. _____________ BacktrackingTMTest.testSerializationMiddleOfSequence _____________
  130.  
  131. self = <tests.unit.nupic.algorithms.backtracking_tm_test.BacktrackingTMTest testMethod=testSerializationMiddleOfSequence>
  132.  
  133. @unittest.skipUnless(capnp, "pycapnp not installed")
  134. def testSerializationMiddleOfSequence(self):
  135. # Create a model and give it some inputs to learn.
  136. tm1 = BacktrackingTM(numberOfCols=100, cellsPerColumn=12,
  137. verbosity=VERBOSITY)
  138. sequences = [self.generateSequence() for _ in xrange(5)]
  139. train = list(itertools.chain.from_iterable(sequences[:3] +
  140. [sequences[3][:5]]))
  141. for bottomUpInput in train:
  142. if bottomUpInput is None:
  143. tm1.reset()
  144. else:
  145. tm1.compute(bottomUpInput, True, True)
  146.  
  147. # Serialize and deserialized the TM.
  148. tmProto = BacktrackingTM.getSchema().new_message()
  149. tm1.write(tmProto)
  150. checkpointPath = os.path.join(self._tmpDir, 'a')
  151. with open(checkpointPath, "wb") as f:
  152. tmProto.write(f)
  153. with open(checkpointPath, "rb") as f:
  154. tmProto = BacktrackingTM.getSchema().read(f)
  155. tm2 = BacktrackingTM.read(tmProto)
  156.  
  157. # Check that the TMs are the same.
  158. > self.assertTMsEqual(tm1, tm2)
  159.  
  160. tests/unit/nupic/algorithms/backtracking_tm_test.py:130:
  161. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  162. tests/unit/nupic/algorithms/backtracking_tm_test.py:348: in assertTMsEqual
  163. self.assertEqual(tm1, tm2, tm1.diff(tm2))
  164. E AssertionError: <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x5ed520d0> != <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x55cdb8d0> : [(('maxSynapsesPerSegment',), -1, -1L), (('maxSegmentsPerCell',), -1, -1L), (('seed',), 42, 42L)]
  165. ----------------------------- Captured stdout call -----------------------------
  166. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6b48> >
  167. ____________ BacktrackingTMTest.testSerializationMiddleOfSequence2 _____________
  168.  
  169. self = <tests.unit.nupic.algorithms.backtracking_tm_test.BacktrackingTMTest testMethod=testSerializationMiddleOfSequence2>
  170.  
  171. @unittest.skipUnless(capnp, "pycapnp not installed")
  172. def testSerializationMiddleOfSequence2(self):
  173. """More complex test of checkpointing in the middle of a sequence."""
  174. tm1 = BacktrackingTM(2048, 32, 0.21, 0.5, 11, 20, 0.1, 0.1, 1.0, 0.0, 14,
  175. False, 5, 2, False, 1960, 0, False, 3, 10, 5, 0, 32,
  176. 128, 32, 'normal')
  177. tm2 = BacktrackingTM(2048, 32, 0.21, 0.5, 11, 20, 0.1, 0.1, 1.0, 0.0, 14,
  178. False, 5, 2, False, 1960, 0, False, 3, 10, 5, 0, 32,
  179. 128, 32, 'normal')
  180.  
  181. with open(resource_filename(__name__, 'data/tm_input.csv'), 'r') as fin:
  182. reader = csv.reader(fin)
  183. records = []
  184. for bottomUpInStr in fin:
  185. bottomUpIn = numpy.array(eval('[' + bottomUpInStr.strip() + ']'),
  186. dtype='int32')
  187. records.append(bottomUpIn)
  188.  
  189. i = 1
  190. for r in records[:250]:
  191. print i
  192. i += 1
  193. output1 = tm1.compute(r, True, True)
  194. output2 = tm2.compute(r, True, True)
  195. self.assertTrue(numpy.array_equal(output1, output2))
  196.  
  197. print 'Serializing and deserializing models.'
  198.  
  199. savePath1 = os.path.join(self._tmpDir, 'tm1.bin')
  200. tmProto1 = BacktrackingTM.getSchema().new_message()
  201. tm1.write(tmProto1)
  202. with open(savePath1, "wb") as f:
  203. tmProto1.write(f)
  204. with open(savePath1, "rb") as f:
  205. tmProto3 = BacktrackingTM.getSchema().read(f)
  206. tm3 = BacktrackingTM.read(tmProto3)
  207.  
  208. savePath2 = os.path.join(self._tmpDir, 'tm2.bin')
  209. tmProto2 = BacktrackingTM.getSchema().new_message()
  210. tm2.write(tmProto2)
  211. with open(savePath2, "wb") as f:
  212. tmProto2.write(f)
  213. with open(savePath2, "rb") as f:
  214. tmProto4 = BacktrackingTM.getSchema().read(f)
  215. tm4 = BacktrackingTM.read(tmProto4)
  216.  
  217. > self.assertTMsEqual(tm1, tm3)
  218.  
  219. tests/unit/nupic/algorithms/backtracking_tm_test.py:193:
  220. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  221. tests/unit/nupic/algorithms/backtracking_tm_test.py:348: in assertTMsEqual
  222. self.assertEqual(tm1, tm2, tm1.diff(tm2))
  223. E AssertionError: <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x55cf0030> != <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x73db3cb0> : [(('maxSynapsesPerSegment',), 32, 32L), (('maxSegmentsPerCell',), 128, 128L), (('seed',), 1960, 1960L)]
  224. ----------------------------- Captured stdout call -----------------------------
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  475. Serializing and deserializing models.
  476. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6f20> >
  477. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6da0> >
  478. _________________ BacktrackingTMTest.testSerializationLearned __________________
  479.  
  480. self = <tests.unit.nupic.algorithms.backtracking_tm_test.BacktrackingTMTest testMethod=testSerializationLearned>
  481.  
  482. @unittest.skipUnless(capnp, "pycapnp not installed")
  483. def testSerializationLearned(self):
  484. # Create a model and give it some inputs to learn.
  485. tm1 = BacktrackingTM(numberOfCols=100, cellsPerColumn=12,
  486. verbosity=VERBOSITY)
  487. sequences = [self.generateSequence() for _ in xrange(5)]
  488. train = list(itertools.chain.from_iterable(sequences[:3]))
  489. for bottomUpInput in train:
  490. if bottomUpInput is None:
  491. tm1.reset()
  492. else:
  493. tm1.compute(bottomUpInput, True, True)
  494.  
  495. # Serialize and deserialized the TM.
  496. tmProto = BacktrackingTM.getSchema().new_message()
  497. tm1.write(tmProto)
  498. checkpointPath = os.path.join(self._tmpDir, 'a')
  499. with open(checkpointPath, "wb") as f:
  500. tmProto.write(f)
  501. with open(checkpointPath, "rb") as f:
  502. tmProto = BacktrackingTM.getSchema().read(f)
  503. tm2 = BacktrackingTM.read(tmProto)
  504.  
  505. # Check that the TMs are the same.
  506. > self.assertTMsEqual(tm1, tm2)
  507.  
  508. tests/unit/nupic/algorithms/backtracking_tm_test.py:89:
  509. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  510. tests/unit/nupic/algorithms/backtracking_tm_test.py:348: in assertTMsEqual
  511. self.assertEqual(tm1, tm2, tm1.diff(tm2))
  512. E AssertionError: <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x73db3270> != <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x744afb30> : [(('maxSynapsesPerSegment',), -1, -1L), (('maxSegmentsPerCell',), -1, -1L), (('seed',), 42, 42L)]
  513. ----------------------------- Captured stdout call -----------------------------
  514. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6fe0> >
  515. _____________ BacktrackingTMTest.testSerializationMiddleOfSequence _____________
  516.  
  517. self = <tests.unit.nupic.algorithms.backtracking_tm_test.BacktrackingTMTest testMethod=testSerializationMiddleOfSequence>
  518.  
  519. @unittest.skipUnless(capnp, "pycapnp not installed")
  520. def testSerializationMiddleOfSequence(self):
  521. # Create a model and give it some inputs to learn.
  522. tm1 = BacktrackingTM(numberOfCols=100, cellsPerColumn=12,
  523. verbosity=VERBOSITY)
  524. sequences = [self.generateSequence() for _ in xrange(5)]
  525. train = list(itertools.chain.from_iterable(sequences[:3] +
  526. [sequences[3][:5]]))
  527. for bottomUpInput in train:
  528. if bottomUpInput is None:
  529. tm1.reset()
  530. else:
  531. tm1.compute(bottomUpInput, True, True)
  532.  
  533. # Serialize and deserialized the TM.
  534. tmProto = BacktrackingTM.getSchema().new_message()
  535. tm1.write(tmProto)
  536. checkpointPath = os.path.join(self._tmpDir, 'a')
  537. with open(checkpointPath, "wb") as f:
  538. tmProto.write(f)
  539. with open(checkpointPath, "rb") as f:
  540. tmProto = BacktrackingTM.getSchema().read(f)
  541. tm2 = BacktrackingTM.read(tmProto)
  542.  
  543. # Check that the TMs are the same.
  544. > self.assertTMsEqual(tm1, tm2)
  545.  
  546. tests/unit/nupic/algorithms/backtracking_tm_test.py:130:
  547. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  548. tests/unit/nupic/algorithms/backtracking_tm_test.py:348: in assertTMsEqual
  549. self.assertEqual(tm1, tm2, tm1.diff(tm2))
  550. E AssertionError: <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x5ea87170> != <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x55cf0110> : [(('maxSynapsesPerSegment',), -1, -1L), (('maxSegmentsPerCell',), -1, -1L), (('seed',), 42, 42L)]
  551. ----------------------------- Captured stdout call -----------------------------
  552. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6e90> >
  553. ____________ BacktrackingTMTest.testSerializationMiddleOfSequence2 _____________
  554.  
  555. self = <tests.unit.nupic.algorithms.backtracking_tm_test.BacktrackingTMTest testMethod=testSerializationMiddleOfSequence2>
  556.  
  557. @unittest.skipUnless(capnp, "pycapnp not installed")
  558. def testSerializationMiddleOfSequence2(self):
  559. """More complex test of checkpointing in the middle of a sequence."""
  560. tm1 = BacktrackingTM(2048, 32, 0.21, 0.5, 11, 20, 0.1, 0.1, 1.0, 0.0, 14,
  561. False, 5, 2, False, 1960, 0, False, 3, 10, 5, 0, 32,
  562. 128, 32, 'normal')
  563. tm2 = BacktrackingTM(2048, 32, 0.21, 0.5, 11, 20, 0.1, 0.1, 1.0, 0.0, 14,
  564. False, 5, 2, False, 1960, 0, False, 3, 10, 5, 0, 32,
  565. 128, 32, 'normal')
  566.  
  567. with open(resource_filename(__name__, 'data/tm_input.csv'), 'r') as fin:
  568. reader = csv.reader(fin)
  569. records = []
  570. for bottomUpInStr in fin:
  571. bottomUpIn = numpy.array(eval('[' + bottomUpInStr.strip() + ']'),
  572. dtype='int32')
  573. records.append(bottomUpIn)
  574.  
  575. i = 1
  576. for r in records[:250]:
  577. print i
  578. i += 1
  579. output1 = tm1.compute(r, True, True)
  580. output2 = tm2.compute(r, True, True)
  581. self.assertTrue(numpy.array_equal(output1, output2))
  582.  
  583. print 'Serializing and deserializing models.'
  584.  
  585. savePath1 = os.path.join(self._tmpDir, 'tm1.bin')
  586. tmProto1 = BacktrackingTM.getSchema().new_message()
  587. tm1.write(tmProto1)
  588. with open(savePath1, "wb") as f:
  589. tmProto1.write(f)
  590. with open(savePath1, "rb") as f:
  591. tmProto3 = BacktrackingTM.getSchema().read(f)
  592. tm3 = BacktrackingTM.read(tmProto3)
  593.  
  594. savePath2 = os.path.join(self._tmpDir, 'tm2.bin')
  595. tmProto2 = BacktrackingTM.getSchema().new_message()
  596. tm2.write(tmProto2)
  597. with open(savePath2, "wb") as f:
  598. tmProto2.write(f)
  599. with open(savePath2, "rb") as f:
  600. tmProto4 = BacktrackingTM.getSchema().read(f)
  601. tm4 = BacktrackingTM.read(tmProto4)
  602.  
  603. > self.assertTMsEqual(tm1, tm3)
  604.  
  605. tests/unit/nupic/algorithms/backtracking_tm_test.py:193:
  606. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  607. tests/unit/nupic/algorithms/backtracking_tm_test.py:348: in assertTMsEqual
  608. self.assertEqual(tm1, tm2, tm1.diff(tm2))
  609. E AssertionError: <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x55cdb690> != <nupic.algorithms.backtracking_tm_cpp.BacktrackingTMCPP object at 0x744afb30> : [(('maxSynapsesPerSegment',), 32, 32L), (('maxSegmentsPerCell',), 128, 128L), (('seed',), 1960, 1960L)]
  610. ----------------------------- Captured stdout call -----------------------------
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  861. Serializing and deserializing models.
  862. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6d70> >
  863. <nupic.bindings.algorithms.Cells4; proxy of <Swig Object of type 'nupic::algorithms::Cells4::Cells4 *' at 0x73ed6c68> >
  864. _______________________ SpatialPoolerTest.testWriteRead ________________________
  865.  
  866. self = <tests.unit.nupic.algorithms.spatial_pooler_unit_test.SpatialPoolerTest testMethod=testWriteRead>
  867.  
  868. @unittest.skipUnless(
  869. capnp, "pycapnp is not installed, skipping serialization test.")
  870. def testWriteRead(self):
  871. sp1 = SpatialPooler(
  872. inputDimensions=[9],
  873. columnDimensions=[5],
  874. potentialRadius=3,
  875. potentialPct=0.5,
  876. globalInhibition=False,
  877. localAreaDensity=-1.0,
  878. numActiveColumnsPerInhArea=3,
  879. stimulusThreshold=1,
  880. synPermInactiveDec=0.01,
  881. synPermActiveInc=0.1,
  882. synPermConnected=0.10,
  883. minPctOverlapDutyCycle=0.1,
  884. dutyCyclePeriod=10,
  885. boostStrength=10.0,
  886. seed=42,
  887. spVerbosity=0)
  888.  
  889. # Run a record through before serializing
  890. inputVector = numpy.array([1, 0, 1, 0, 1, 0, 0, 1, 1])
  891. activeArray1 = numpy.zeros(5)
  892. sp1.compute(inputVector, True, activeArray1)
  893.  
  894. proto1 = SpatialPoolerProto_capnp.SpatialPoolerProto.new_message()
  895. sp1.write(proto1)
  896.  
  897. # Write the proto to a temp file and read it back into a new proto
  898. with tempfile.TemporaryFile() as f:
  899. proto1.write(f)
  900. f.seek(0)
  901. proto2 = SpatialPoolerProto_capnp.SpatialPoolerProto.read(f)
  902.  
  903. # Load the deserialized proto
  904. sp2 = SpatialPooler.read(proto2)
  905.  
  906. ephemeral = set(["_boostedOverlaps", "_overlaps"])
  907.  
  908. # Check that the two spatial poolers have the same attributes
  909. self.assertSetEqual(set(sp1.__dict__.keys()), set(sp2.__dict__.keys()))
  910. for k, v1 in sp1.__dict__.iteritems():
  911. v2 = getattr(sp2, k)
  912. if k in ephemeral:
  913. continue
  914. if isinstance(v1, numpy.ndarray):
  915. self.assertEqual(v1.dtype, v2.dtype,
  916. "Key %s has differing dtypes: %s vs %s" % (
  917. > k, v1.dtype, v2.dtype))
  918. E AssertionError: Key _inputDimensions has differing dtypes: int32 vs int64
  919.  
  920. tests/unit/nupic/algorithms/spatial_pooler_unit_test.py:1503: AssertionError
  921. ----------------------------- Captured stdout call -----------------------------
  922. New seed generated as: 95868 called by run line 320 -> setUp
  923. _________________________ NetworkTest.testDelayedLink __________________________
  924.  
  925. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testDelayedLink>
  926.  
  927. def testDelayedLink(self):
  928. n = engine.Network()
  929.  
  930. region1 = n.addRegion("region1", "TestNode", "")
  931. region2 = n.addRegion("region2", "TestNode", "")
  932.  
  933. names = []
  934.  
  935. propagationDelay = 2
  936. n.link("region1", "region2", "TestFanIn2", "",
  937. propagationDelay=propagationDelay)
  938.  
  939. > r1dims = engine.Dimensions([6, 4])
  940.  
  941. tests/unit/nupic/engine/network_test.py:329:
  942. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  943. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:172: in __init__
  944. engine_internal.Dimensions.__init__(self, *args)
  945. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  946.  
  947. self = <nupic.engine.Dimensions; >, args = ([6, 4],)
  948.  
  949. def __init__(self, *args):
  950. """
  951. __init__(self) -> Dimensions
  952. __init__(self, v) -> Dimensions
  953. __init__(self, x) -> Dimensions
  954. __init__(self, x, y) -> Dimensions
  955. __init__(self, x, y, z) -> Dimensions
  956. """
  957. > this = _engine_internal.new_Dimensions(*args)
  958. E NotImplementedError: Wrong number or type of arguments for overloaded function 'new_Dimensions'.
  959. E Possible C/C++ prototypes are:
  960. E nupic::Dimensions::Dimensions()
  961. E nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)
  962. E nupic::Dimensions::Dimensions(size_t)
  963. E nupic::Dimensions::Dimensions(size_t,size_t)
  964. E nupic::Dimensions::Dimensions(size_t,size_t,size_t)
  965.  
  966. ../nupic.core/bindings/py/src/nupic/bindings/engine_internal.py:613: NotImplementedError
  967. ________________________ NetworkTest.testErrorHandling _________________________
  968.  
  969. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testErrorHandling>
  970.  
  971. @unittest.skipIf(sys.platform.lower().startswith("win"),
  972. "Not supported on Windows, yet!")
  973. def testErrorHandling(self):
  974. n = engine.Network()
  975.  
  976. # Test trying to add non-existent node
  977. with self.assertRaises(Exception) as cm:
  978. n.addRegion('r', 'py.NonExistingNode', '')
  979.  
  980. self.assertEqual(cm.exception.message, "Matching Python module for NonExistingNode not found.")
  981.  
  982. orig_import = __import__
  983. def import_mock(name, *args):
  984. if name == "nupic.regions.unimportable_node":
  985. raise SyntaxError("invalid syntax (unimportable_node.py, line 5)")
  986.  
  987. return orig_import(name, *args)
  988.  
  989. with patch('__builtin__.__import__', side_effect=import_mock):
  990. # Test failure during import
  991. with self.assertRaises(Exception) as cm:
  992. n.addRegion('r', 'py.UnimportableNode', '')
  993.  
  994. self.assertEqual(cm.exception.message, "invalid syntax (unimportable_node.py, line 5)")
  995.  
  996. # Test failure in the __init__() method
  997. with self.assertRaises(Exception) as cm:
  998. n.addRegion('r', 'py.TestNode', '{ failInInit: 1 }')
  999.  
  1000. self.assertEqual(cm.exception.message, "TestNode.__init__() Failing on purpose as requested")
  1001.  
  1002. # Test failure inside the compute() method
  1003. with self.assertRaises(Exception) as cm:
  1004. r = n.addRegion('r', 'py.TestNode', '{ failInCompute: 1 }')
  1005. r.dimensions = engine.Dimensions([4, 4])
  1006. n.initialize()
  1007. n.run(1)
  1008.  
  1009. self.assertEqual(str(cm.exception),
  1010. > 'TestNode.compute() Failing on purpose as requested')
  1011. E AssertionError: "Wrong number or type of arguments for overloaded function 'new_Dimensions'.\n Possible C/C++ prototypes are:\n nupic::Dimensions::Dimensions()\n nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)\n nupic::Dimensions::Dimensions(size_t)\n nupic::Dimensions::Dimensions(size_t,size_t)\n nupic::Dimensions::Dimensions(size_t,size_t,size_t)\n" != 'TestNode.compute() Failing on purpose as requested'
  1012.  
  1013. tests/unit/nupic/engine/network_test.py:74: AssertionError
  1014. ----------------------------- Captured stdout call -----------------------------
  1015. {'singleNodeOnly': False, 'inputs': {'bottomUpIn': {'count': 0, 'requireSplitterMap': False, 'description': 'Primary input for the node', 'isDefaultInput': True, 'dataType': 'Real64', 'required': True, 'regionLevel': False}}, 'commands': {}, 'description': 'The node spec of the NuPIC 2 Python TestNode', 'parameters': {'failInCompute': {'count': 1, 'description': 'For testing failure in compute()', 'dataType': 'Int32', 'accessMode': 'ReadWrite', 'defaultValue': '0', 'constraints': ''}, 'stringParam': {'count': 0, 'description': 'String parameter', 'dataType': 'Byte', 'accessMode': 'ReadWrite', 'defaultValue': 'nodespec value', 'constraints': ''}, 'real32Param': {'count': 1, 'description': 'Real32 scalar parameter', 'dataType': 'Real32', 'accessMode': 'ReadWrite', 'defaultValue': '32.1', 'constraints': ''}, 'failInInit': {'count': 1, 'description': 'For testing failure in __init__()', 'dataType': 'Int32', 'accessMode': 'ReadWrite', 'defaultValue': '0', 'constraints': ''}, 'boolArrayParam': {'count': 0, 'description': 'bool array parameter', 'dataType': 'Bool', 'accessMode': 'ReadWrite', 'defaultValue': '', 'constraints': ''}, 'uint32Param': {'count': 1, 'description': 'UInt32 scalar parameter', 'dataType': 'UInt32', 'accessMode': 'ReadWrite', 'defaultValue': '33', 'constraints': ''}, 'boolParam': {'count': 1, 'description': 'bool parameter', 'dataType': 'Bool', 'accessMode': 'ReadWrite', 'defaultValue': 'false', 'constraints': ''}, 'int32Param': {'count': 1, 'description': 'Int32 scalar parameter', 'dataType': 'Int32', 'accessMode': 'ReadWrite', 'defaultValue': '32', 'constraints': ''}, 'uint64Param': {'count': 1, 'description': 'UInt64 scalar parameter', 'dataType': 'UInt64', 'accessMode': 'ReadWrite', 'defaultValue': '65', 'constraints': ''}, 'int64arrayParam': {'count': 0, 'description': 'Int64 array parameter', 'dataType': 'Int64', 'accessMode': 'ReadWrite', 'defaultValue': '', 'constraints': ''}, 'int64Param': {'count': 1, 'description': 'Int64 scalar parameter', 'dataType': 'Int64', 'accessMode': 'ReadWrite', 'defaultValue': '64', 'constraints': ''}, 'real64Param': {'count': 1, 'description': 'Real64 scalar parameter', 'dataType': 'Real64', 'accessMode': 'ReadWrite', 'defaultValue': '64.1', 'constraints': ''}, 'real32arrayParam': {'count': 0, 'description': 'Real32 array parameter', 'dataType': 'Real32', 'accessMode': 'ReadWrite', 'defaultValue': '', 'constraints': ''}}, 'outputs': {'bottomUpOut': {'count': 0, 'dataType': 'Real64', 'isDefaultOutput': True, 'regionLevel': False, 'description': 'Primary output for the node'}}}
  1016. ----------------------------- Captured stderr call -----------------------------
  1017. ERR: Matching Python module for NonExistingNode not found. [/home/pi/nupic.core/src/nupic/engine/RegionImplFactory.cpp line 444]
  1018. WARN: PyRegion::createSpec failed: 0x7ea7e0dc
  1019. ERR: Unable to create region r of type TestNode [/home/pi/nupic.core/src/nupic/engine/RegionImplFactory.cpp line 272]
  1020. _______________________ NetworkTest.testInputsAndOutputs _______________________
  1021.  
  1022. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testInputsAndOutputs>
  1023.  
  1024. def testInputsAndOutputs(self):
  1025. n = engine.Network()
  1026.  
  1027. region1 = n.addRegion("region1", "TestNode", "")
  1028. region2 = n.addRegion("region2", "TestNode", "")
  1029. > region1.setDimensions(engine.Dimensions([6, 4]))
  1030.  
  1031. tests/unit/nupic/engine/network_test.py:358:
  1032. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1033. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:172: in __init__
  1034. engine_internal.Dimensions.__init__(self, *args)
  1035. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1036.  
  1037. self = <nupic.engine.Dimensions; >, args = ([6, 4],)
  1038.  
  1039. def __init__(self, *args):
  1040. """
  1041. __init__(self) -> Dimensions
  1042. __init__(self, v) -> Dimensions
  1043. __init__(self, x) -> Dimensions
  1044. __init__(self, x, y) -> Dimensions
  1045. __init__(self, x, y, z) -> Dimensions
  1046. """
  1047. > this = _engine_internal.new_Dimensions(*args)
  1048. E NotImplementedError: Wrong number or type of arguments for overloaded function 'new_Dimensions'.
  1049. E Possible C/C++ prototypes are:
  1050. E nupic::Dimensions::Dimensions()
  1051. E nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)
  1052. E nupic::Dimensions::Dimensions(size_t)
  1053. E nupic::Dimensions::Dimensions(size_t,size_t)
  1054. E nupic::Dimensions::Dimensions(size_t,size_t,size_t)
  1055.  
  1056. ../nupic.core/bindings/py/src/nupic/bindings/engine_internal.py:613: NotImplementedError
  1057. _______________________ NetworkTest.testOneRegionNetwork _______________________
  1058.  
  1059. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testOneRegionNetwork>
  1060.  
  1061. def testOneRegionNetwork(self):
  1062. n = engine.Network()
  1063.  
  1064. print "Number of regions in new network: %d" % len(n.regions)
  1065. self.assertEqual(len(n.regions), 0)
  1066.  
  1067. print "Adding level1SP"
  1068. level1SP = n.addRegion("level1SP", "TestNode", "")
  1069. > print "Current dimensions are: %s" % level1SP.dimensions
  1070.  
  1071. tests/unit/nupic/engine/network_test.py:103:
  1072. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1073.  
  1074. self = <nupic.engine.Region object at 0x737f2170>
  1075.  
  1076. def _getDimensions(self):
  1077. """Dimensions of the region"""
  1078. > return Dimensions(tuple(self._region.getDimensions()))
  1079. E TypeError: 'Dimensions' object is not iterable
  1080.  
  1081. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:473: TypeError
  1082. ----------------------------- Captured stdout call -----------------------------
  1083. Number of regions in new network: 0
  1084. Adding level1SP
  1085. ______________________ NetworkTest.testPyNodeGetNodeSpec _______________________
  1086.  
  1087. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testPyNodeGetNodeSpec>
  1088.  
  1089. @unittest.skipIf(sys.platform.lower().startswith("win"),
  1090. "Not supported on Windows, yet!")
  1091. def testPyNodeGetNodeSpec(self):
  1092. n = engine.Network()
  1093.  
  1094. r = n.addRegion("region", "py.TestNode", "")
  1095.  
  1096. print "Setting region1 dims"
  1097. > r.setDimensions(engine.Dimensions([6, 4]))
  1098.  
  1099. tests/unit/nupic/engine/network_test.py:411:
  1100. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1101. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:172: in __init__
  1102. engine_internal.Dimensions.__init__(self, *args)
  1103. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1104.  
  1105. self = <nupic.engine.Dimensions; >, args = ([6, 4],)
  1106.  
  1107. def __init__(self, *args):
  1108. """
  1109. __init__(self) -> Dimensions
  1110. __init__(self, v) -> Dimensions
  1111. __init__(self, x) -> Dimensions
  1112. __init__(self, x, y) -> Dimensions
  1113. __init__(self, x, y, z) -> Dimensions
  1114. """
  1115. > this = _engine_internal.new_Dimensions(*args)
  1116. E NotImplementedError: Wrong number or type of arguments for overloaded function 'new_Dimensions'.
  1117. E Possible C/C++ prototypes are:
  1118. E nupic::Dimensions::Dimensions()
  1119. E nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)
  1120. E nupic::Dimensions::Dimensions(size_t)
  1121. E nupic::Dimensions::Dimensions(size_t,size_t)
  1122. E nupic::Dimensions::Dimensions(size_t,size_t,size_t)
  1123.  
  1124. ../nupic.core/bindings/py/src/nupic/bindings/engine_internal.py:613: NotImplementedError
  1125. ----------------------------- Captured stdout call -----------------------------
  1126. Setting region1 dims
  1127. ____________________ NetworkTest.testPyNodeGetSetParameter _____________________
  1128.  
  1129. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testPyNodeGetSetParameter>
  1130.  
  1131. @unittest.skipIf(sys.platform.lower().startswith("win"),
  1132. "Not supported on Windows, yet!")
  1133. def testPyNodeGetSetParameter(self):
  1134. n = engine.Network()
  1135.  
  1136. r = n.addRegion("region", "py.TestNode", "")
  1137.  
  1138. print "Setting region1 dims"
  1139. > r.dimensions = engine.Dimensions([6, 4])
  1140.  
  1141. tests/unit/nupic/engine/network_test.py:389:
  1142. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1143. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:172: in __init__
  1144. engine_internal.Dimensions.__init__(self, *args)
  1145. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1146.  
  1147. self = <nupic.engine.Dimensions; >, args = ([6, 4],)
  1148.  
  1149. def __init__(self, *args):
  1150. """
  1151. __init__(self) -> Dimensions
  1152. __init__(self, v) -> Dimensions
  1153. __init__(self, x) -> Dimensions
  1154. __init__(self, x, y) -> Dimensions
  1155. __init__(self, x, y, z) -> Dimensions
  1156. """
  1157. > this = _engine_internal.new_Dimensions(*args)
  1158. E NotImplementedError: Wrong number or type of arguments for overloaded function 'new_Dimensions'.
  1159. E Possible C/C++ prototypes are:
  1160. E nupic::Dimensions::Dimensions()
  1161. E nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)
  1162. E nupic::Dimensions::Dimensions(size_t)
  1163. E nupic::Dimensions::Dimensions(size_t,size_t)
  1164. E nupic::Dimensions::Dimensions(size_t,size_t,size_t)
  1165.  
  1166. ../nupic.core/bindings/py/src/nupic/bindings/engine_internal.py:613: NotImplementedError
  1167. ----------------------------- Captured stdout call -----------------------------
  1168. Setting region1 dims
  1169. _______________________ NetworkTest.testTwoRegionNetwork _______________________
  1170.  
  1171. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testTwoRegionNetwork>
  1172.  
  1173. def testTwoRegionNetwork(self):
  1174. n = engine.Network()
  1175.  
  1176. region1 = n.addRegion("region1", "TestNode", "")
  1177. region2 = n.addRegion("region2", "TestNode", "")
  1178.  
  1179. names = [region[0] for region in n.regions]
  1180. self.assertEqual(names, ['region1', 'region2'])
  1181. print n.getPhases('region1')
  1182. self.assertEqual(n.getPhases('region1'), (0,))
  1183. self.assertEqual(n.getPhases('region2'), (1,))
  1184.  
  1185. n.link("region1", "region2", "TestFanIn2", "")
  1186.  
  1187. print "Initialize should fail..."
  1188. with self.assertRaises(Exception):
  1189. n.initialize()
  1190.  
  1191. print "Setting region1 dims"
  1192. > r1dims = engine.Dimensions([6, 4])
  1193.  
  1194. tests/unit/nupic/engine/network_test.py:301:
  1195. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1196. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:172: in __init__
  1197. engine_internal.Dimensions.__init__(self, *args)
  1198. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1199.  
  1200. self = <nupic.engine.Dimensions; >, args = ([6, 4],)
  1201.  
  1202. def __init__(self, *args):
  1203. """
  1204. __init__(self) -> Dimensions
  1205. __init__(self, v) -> Dimensions
  1206. __init__(self, x) -> Dimensions
  1207. __init__(self, x, y) -> Dimensions
  1208. __init__(self, x, y, z) -> Dimensions
  1209. """
  1210. > this = _engine_internal.new_Dimensions(*args)
  1211. E NotImplementedError: Wrong number or type of arguments for overloaded function 'new_Dimensions'.
  1212. E Possible C/C++ prototypes are:
  1213. E nupic::Dimensions::Dimensions()
  1214. E nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)
  1215. E nupic::Dimensions::Dimensions(size_t)
  1216. E nupic::Dimensions::Dimensions(size_t,size_t)
  1217. E nupic::Dimensions::Dimensions(size_t,size_t,size_t)
  1218.  
  1219. ../nupic.core/bindings/py/src/nupic/bindings/engine_internal.py:613: NotImplementedError
  1220. ----------------------------- Captured stdout call -----------------------------
  1221. (0,)
  1222. Initialize should fail...
  1223. Setting region1 dims
  1224. ----------------------------- Captured stderr call -----------------------------
  1225. ERR: Network::initialize() -- unable to evaluate all links
  1226. The following links could not be evaluated:
  1227. [region1.bottomUpOut (region dims: [unspecified]) to region2.bottomUpIn (region dims: [unspecified]) type: TestFanIn2]
  1228.  
  1229. [/home/pi/nupic.core/src/nupic/engine/Network.cpp line 528]
  1230. ____________________ NetworkTest.testTwoRegionPyNodeNetwork ____________________
  1231.  
  1232. self = <tests.unit.nupic.engine.network_test.NetworkTest testMethod=testTwoRegionPyNodeNetwork>
  1233.  
  1234. @unittest.skipIf(sys.platform.lower().startswith("win"),
  1235. "Not supported on Windows, yet!")
  1236. def testTwoRegionPyNodeNetwork(self):
  1237. n = engine.Network()
  1238.  
  1239. region1 = n.addRegion("region1", "py.TestNode", "")
  1240. region2 = n.addRegion("region2", "py.TestNode", "")
  1241.  
  1242. n.link("region1", "region2", "TestFanIn2", "")
  1243.  
  1244. print "Initialize should fail..."
  1245. with self.assertRaises(Exception):
  1246. n.initialize()
  1247.  
  1248. print "Setting region1 dims"
  1249. > r1dims = engine.Dimensions([6, 4])
  1250.  
  1251. tests/unit/nupic/engine/network_test.py:442:
  1252. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1253. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:172: in __init__
  1254. engine_internal.Dimensions.__init__(self, *args)
  1255. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1256.  
  1257. self = <nupic.engine.Dimensions; >, args = ([6, 4],)
  1258.  
  1259. def __init__(self, *args):
  1260. """
  1261. __init__(self) -> Dimensions
  1262. __init__(self, v) -> Dimensions
  1263. __init__(self, x) -> Dimensions
  1264. __init__(self, x, y) -> Dimensions
  1265. __init__(self, x, y, z) -> Dimensions
  1266. """
  1267. > this = _engine_internal.new_Dimensions(*args)
  1268. E NotImplementedError: Wrong number or type of arguments for overloaded function 'new_Dimensions'.
  1269. E Possible C/C++ prototypes are:
  1270. E nupic::Dimensions::Dimensions()
  1271. E nupic::Dimensions::Dimensions(std::vector< size_t,std::allocator< size_t > >)
  1272. E nupic::Dimensions::Dimensions(size_t)
  1273. E nupic::Dimensions::Dimensions(size_t,size_t)
  1274. E nupic::Dimensions::Dimensions(size_t,size_t,size_t)
  1275.  
  1276. ../nupic.core/bindings/py/src/nupic/bindings/engine_internal.py:613: NotImplementedError
  1277. ----------------------------- Captured stdout call -----------------------------
  1278. Initialize should fail...
  1279. Setting region1 dims
  1280. ----------------------------- Captured stderr call -----------------------------
  1281. ERR: Network::initialize() -- unable to evaluate all links
  1282. The following links could not be evaluated:
  1283. [region1.bottomUpOut (region dims: [unspecified]) to region2.bottomUpIn (region dims: [unspecified]) type: TestFanIn2]
  1284.  
  1285. [/home/pi/nupic.core/src/nupic/engine/Network.cpp line 528]
  1286. _________________________ NetworkSugarTest.testRegion __________________________
  1287.  
  1288. self = <tests.unit.nupic.engine.syntactic_sugar_test.NetworkSugarTest testMethod=testRegion>
  1289.  
  1290. @unittest.skipIf(sys.platform.lower().startswith("win"),
  1291. "Not supported on Windows, yet!")
  1292. def testRegion(self):
  1293. r = net.Network().addRegion('r', 'py.TestNode', '')
  1294.  
  1295. print r.spec
  1296. self.assertEqual(r.type, 'py.TestNode')
  1297. self.assertEqual(r.name, 'r')
  1298. > self.assertTrue(r.dimensions.isUnspecified())
  1299.  
  1300. tests/unit/nupic/engine/syntactic_sugar_test.py:122:
  1301. _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
  1302.  
  1303. self = <nupic.engine.Region object at 0x5f2caab0>
  1304.  
  1305. def _getDimensions(self):
  1306. """Dimensions of the region"""
  1307. > return Dimensions(tuple(self._region.getDimensions()))
  1308. E TypeError: 'Dimensions' object is not iterable
  1309.  
  1310. /usr/local/lib/python2.7/dist-packages/nupic/engine/__init__.py:473: TypeError
  1311. ----------------------------- Captured stdout call -----------------------------
  1312. Spec:
  1313. Description:
  1314. The node spec of the NuPIC 2 Python TestNode
  1315.  
  1316. Parameters:
  1317. failInCompute
  1318. description: For testing failure in compute()
  1319. type: Int32
  1320. count: 1
  1321. stringParam
  1322. description: String parameter
  1323. type: Byte
  1324. count: 0
  1325. real32Param
  1326. description: Real32 scalar parameter
  1327. type: Real32
  1328. count: 1
  1329. failInInit
  1330. description: For testing failure in __init__()
  1331. type: Int32
  1332. count: 1
  1333. boolArrayParam
  1334. description: bool array parameter
  1335. type: Bool
  1336. count: 0
  1337. uint32Param
  1338. description: UInt32 scalar parameter
  1339. type: UInt32
  1340. count: 1
  1341. boolParam
  1342. description: bool parameter
  1343. type: Bool
  1344. count: 1
  1345. int32Param
  1346. description: Int32 scalar parameter
  1347. type: Int32
  1348. count: 1
  1349. uint64Param
  1350. description: UInt64 scalar parameter
  1351. type: UInt64
  1352. count: 1
  1353. int64arrayParam
  1354. description: Int64 array parameter
  1355. type: Int64
  1356. count: 0
  1357. int64Param
  1358. description: Int64 scalar parameter
  1359. type: Int64
  1360. count: 1
  1361. real64Param
  1362. description: Real64 scalar parameter
  1363. type: Real64
  1364. count: 1
  1365. real32arrayParam
  1366. description: Real32 array parameter
  1367. type: Real32
  1368. count: 0
  1369. self
  1370. description: The PyObject * of the region's Python classd
  1371. type: Handle
  1372. count: 1
  1373. Inputs:
  1374. bottomUpIn
  1375. Outputs:
  1376. bottomUpOut
  1377. Commands:
  1378.  
  1379. _______________________ AnomalyRegionTest.testWriteRead ________________________
  1380.  
  1381. self = <tests.unit.nupic.regions.anomaly_region_test.AnomalyRegionTest testMethod=testWriteRead>
  1382.  
  1383. @unittest.skipUnless(
  1384. capnp, "pycapnp is not installed, skipping serialization test.")
  1385. def testWriteRead(self):
  1386. predictedColumns = [[0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1387. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1388. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1389. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1390. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1391. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1392. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1393. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1394. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1395. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0]]
  1396. activeColumns = [[0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1397. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1],
  1398. [0, 1 ,0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0],
  1399. [0, 0 ,0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0],
  1400. [1, 0 ,0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
  1401. [0, 0 ,0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
  1402. [0, 0 ,0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1],
  1403. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0],
  1404. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1],
  1405. [0, 1 ,1, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0]]
  1406. anomalyExpected = (1.0, 0.25, 1.0/3.0, 2.0/3.0, 1.0, 2.0/3.0, 1.0,
  1407. 0.0, 0.25, 0.25)
  1408.  
  1409. anomalyRegion1 = AnomalyRegion()
  1410. inputs = AnomalyRegion.getSpec()['inputs']
  1411. outputs = AnomalyRegion.getSpec()['outputs']
  1412. for i in xrange(0, 6):
  1413. inputs['predictedColumns'] = numpy.array(predictedColumns[i])
  1414. inputs['activeColumns'] = numpy.array(activeColumns[i])
  1415. anomalyRegion1.compute(inputs, outputs)
  1416.  
  1417. proto1 = AnomalyRegionProto.new_message()
  1418. anomalyRegion1.write(proto1)
  1419.  
  1420. # Write the proto to a temp file and read it back into a new proto
  1421. with tempfile.TemporaryFile() as f:
  1422. proto1.write(f)
  1423. f.seek(0)
  1424. proto2 = AnomalyRegionProto.read(f)
  1425.  
  1426. # Load the deserialized proto
  1427. anomalyRegion2 = AnomalyRegion.read(proto2)
  1428.  
  1429. > self.assertEqual(anomalyRegion1, anomalyRegion2)
  1430. E AssertionError: <nupic.regions.anomaly_region.AnomalyRegion object at 0x737f7250> != <nupic.regions.anomaly_region.AnomalyRegion object at 0x737f7eb0>
  1431.  
  1432. tests/unit/nupic/regions/anomaly_region_test.py:88: AssertionError
  1433. ============================ pytest-warning summary ============================
  1434. WC1 /home/pi/nupic/tests/unit/nupic/engine/network_test.py cannot collect test class 'TestNode' because it has a __init__ constructor
  1435. WC1 /home/pi/nupic/tests/unit/nupic/frameworks/opf/htmpredictionmodel_classifier_helper_test.py cannot collect test class 'TestOptionParser' because it has a __init__ constructor
  1436. WC1 /home/pi/nupic/tests/unit/nupic/regions/knn_anomaly_classifier_region_test.py cannot collect test class 'TestOptionParser' because it has a __init__ constructor
  1437. WC1 /home/pi/nupic/tests/unit/nupic/support/decorators_test.py cannot collect test class 'TestParentException' because it has a __init__ constructor
  1438. WC1 /home/pi/nupic/tests/unit/nupic/support/decorators_test.py cannot collect test class 'TestChildException' because it has a __init__ constructor
  1439. 17 failed, 692 passed, 17 skipped, 8 xfailed, 5 pytest-warnings in 885.90 seconds
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